BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495618
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55330.1 | Symbols: | MBOAT (membrane bound O-acyl transfer... 756 0.0
AT5G55340.1 | Symbols: | MBOAT (membrane bound O-acyl transfer... 196 3e-49
> AT5G55330.1 | Symbols: | MBOAT (membrane bound O-acyl transferase)
family protein | chr5:22437825-22438865 REVERSE LENGTH=1041
Length=1041
Score = 756 bits (409), Expect = 0.0
Identities = 488/527 (93%), Gaps = 2/527 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGAACTCAATTTATTCATCGAAGTATGGGTTTCTGCAATCATCTCAGTAACT 60
||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAGGAAGAACTCAAGTTATTCATCCAAGTATGGGTTTCTGCAATCATTTCAGTAACT 60
Query 61 TATTGTTACTACTTACCACTGAAAATCAAAACCAGTGTACTTCGATTACTTTATGTTCTT 120
||||||||||||||| ||| ||||||||||||||| | ||||||||||| | |||||||
Sbjct 61 TATTGTTACTACTTAACACCCAAAATCAAAACCAGTCTTCTTCGATTACTATCTGTTCTT 120
Query 121 CCTGTTTGTGCTTTGTTTCTTGCTCTTCCTATGTTTTTCTCCACTGTTCATTTCTCTTTC 180
|||||||||| |||||||||| | ||||||| ||||||||||||||||||| |||||||
Sbjct 121 CCTGTTTGTGTTTTGTTTCTTATTATTCCTATCTTTTTCTCCACTGTTCATTCCTCTTTC 180
Query 181 ACTATAGCCTTTTTCCTCTCAGGTCTTGCAGTTCCAAAACTCATCCTCTTTGCATTAGAA 240
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTATTGCATTTTTCCTCTCAGGTCTTGCAGTTCCAAAACTCATCCTCTTTGCATTAGAA 240
Query 241 AAAGGTCCTCTTTTTCCACTTCCTCATAATCTCCTTCAATTCATCTGCTTTGCTTGCTTC 300
||||||||||||||||||||||||| |||||||| ||| ||| |||||||||||||||||
Sbjct 241 AAAGGTCCTCTTTTTCCACTTCCTCCTAATCTCCCTCATTTCGTCTGCTTTGCTTGCTTC 300
Query 301 CCCATCAATTTTCAAATAAACCCTAACCCTGGAAATCCTAACCATTTCCCCAAATGGGTT 360
|||||||| |||||| ||| |||||||||| |||| |||||||||||||||||||||||
Sbjct 301 CCCATCAAGCTTCAAAAAAAACCTAACCCTGAAAATACTAACCATTTCCCCAAATGGGTT 360
Query 361 TTTGCCCTTAAAGTTTTAATCTTTGGTGCCTTGTTACTACAAGTGTATGATTACAAACAA 420
|||||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||
Sbjct 361 TTTGCCCTGAAAGTTTTCATCTTTGGTGCCTTGTTACTACAAGCGTATCATTACAAACAA 420
Query 421 TTTCT-TCCTCCGAATTTTCTATTGGGTCTCTATGCTCTGCATATATACTTAGAGCTTGA 479
||||| || | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TTTCTATC-TACGAATTTTCTATTGGGTCTCTATGCTCTGCATATATACTTGGAGCTTGA 479
Query 480 GATTTCCTTGACCTTGATAAAATTTCTCGTCAGTATAACTCTAGGGT 526
||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 480 GATTTCCTTAACCTTGATAAAATTTCTCGTCAGTATCACTCTTGGGT 526
Score = 749 bits (405), Expect = 0.0
Identities = 453/476 (95%), Gaps = 3/476 (1%)
Strand=Plus/Plus
Query 527 CCACCTCTCTATATGACTTCTGGGGTCACCGATGGAACCTCATGGTCTCGAAGATTCTTT 586
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 563 CCACCTCTCTACATGACTTCTGGGGTCACCGATGGAACCTCATGGTCTCGAAGATTCTCT 622
Query 587 GGCTCGCAGTGTACCTCCCCATACGGAAATGGCGAGCCAAGAGCTCCGAGTGGGATAGGT 646
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 623 GGCTCGCAGTGTACAACCCCATACGGCAATGGCGAGCCAAGAGCTCCGAGTGGGATCGGT 682
Query 647 TCTTCGCGATTTTCGCCACGTTCCTCGTCTCTGGTGTGGCTCACGAGATTCTCTACTTTT 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 683 TCTTCGCGATTTTCGCCACGTTCCTCGTCTCTGGTGTGGCTCACGAGATTCTCTACTTCT 742
Query 707 ATTTGACACGTGAGAAGCCTACATGGGAGGTGACTTGGTTCTTTGTGTTACACGGGCTTT 766
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 743 ATTTGACACGTGAGAAGCCTACATGGGAGGTGACTTGGTTCTTTGTGTTACATGGGTTTT 802
Query 767 GCATGGCGGCTGAAGTGGCAGTGAAGAGGAAGACGAAGTTGGTGCAGCGGTGGCAGGTGA 826
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 803 GCATGGCGGCTGAAGTGGCACTGAAGAGGAAGACGAAGTTGGTGCAGCGGTGGCCGGTGA 862
Query 827 ATCCGGCGGTGTCTAGACTGCTTACGGTGGGGTTTGTGTTTGTGACTGGTGTTTGGCTAT 886
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 ATCCGGCAGTGTCGAGACTGCTTACGGTGGGGTTTGTGTTTGTGACTGGTGTTTGGCTAT 922
Query 887 TTTCCCCTCAGCCTATTAGGCACGGCTTGATGGAGAGATTCATCATCAATGAAGACTTGT 946
||||||| ||||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct 923 TTTCCCCCCAGCCTATTAGGCACGGCTTGATGGAGAGGTTCATCA--A-TGAAGACTTGT 979
Query 947 TTTTAATTGATTTCTTTAATCGCAAGTTATTTATTCTGTTAGGGTTGTTTACGAGT 1002
|| ||||||||||||||||||| ||||||| ||| || ||||||||||||||||||
Sbjct 980 TTCTAATTGATTTCTTTAATCGTAAGTTATATATCCTCTTAGGGTTGTTTACGAGT 1035
> AT5G55340.1 | Symbols: | MBOAT (membrane bound O-acyl transferase)
family protein | chr5:22439851-22441005 REVERSE LENGTH=1155
Length=1155
Score = 196 bits (106), Expect = 3e-49
Identities = 361/478 (76%), Gaps = 41/478 (9%)
Strand=Plus/Plus
Query 527 CCACCTCTCTATATGACTTCTGGGGTCACCGATGGAACCTCATGG-TCTCGAAGATTCTT 585
|||| |||||| | ||||||||||||| ||| ||||| ||||||| || || ||||||
Sbjct 573 CCACATCTCTACAAGACTTCTGGGGTCGCCGGTGGAATCTCATGGTTC-CGGCGATTCTC 631
Query 586 TGGCTC-GCAGTGTACCTC-CCCATACGG-AAATGGC-G-A-GC-CAA-GAGCTCCGAG- 636
||| | || || || | | || || ||| | | | | | || || ||| |||| |
Sbjct 632 CGGC-CAGCCGTTTA-CGCACCAATGCGGCGAGTCTCTGAACGCAAAATGAGTTCCG-GT 688
Query 637 TGGGATAGGTTCTTC-GCGATTTTCGCCA-CGTTCCTCGTCTCTGGTGTGGCTCACGAGA 694
|||| | ||| | | | |||||| | || |||| ||||||| ||| ||| |||||| |
Sbjct 689 TGGGCTCTGTT-TCCGGGGATTTT-GGCAGCGTTTATCGTCTCCGGTTTGGTTCACGA-A 745
Query 695 TT-CTCTACTTTTATTTGACACGTGAGAAGCCTACATGG-GAGGTGACT-TGGTTCTTTG 751
|| |||| ||| ||||||| |||||||| ||||||| || || || ||| | ||||||||
Sbjct 746 TTGCTCTTCTTCTATTTGATACGTGAGATGCCTACA-GGAGAAGTTACTCT-GTTCTTTG 803
Query 752 TGTTACACGGGC-TTTGCA-TGGCGGCT-GAAGTGGCAGTGAAGAGGAAGACGAAGTTGG 808
||||||| ||| |||| | | || | | ||| |||| ||||||| ||| |||| | | |
Sbjct 804 TGTTACA-TGGCGTTTGTACT-GCTG-TAGAATTGGCGGTGAAGAAGAAAACGACGGTAG 860
Query 809 TGCAGCGGTGGCAGG-TGAATCCGGCGGTGTCTAGACTGCTTACGGTGGGGTTTGTGTTT 867
|||||||||| || ||| ||||| |||||| | | || ||||||||||||||||||
Sbjct 861 CACAGCGGTGGC-GGTTGAGTCCGGGGGTGTCGCGGGTTCTCACGGTGGGGTTTGTGTTT 919
Query 868 GTGACTGGTGTTTGGCTATTTTCCCCTCAGCCTATTAGGCA-CGGCTTGATGGAGAGATT 926
|||||||||| |||| | ||| | ||||||| || ||| | ||| |||||||||||||
Sbjct 920 GTGACTGGTGGTTGGTTGTTTACACCTCAGCTTAAAAGG-AGCGGGGTGATGGAGAGATT 978
Query 927 CATCATCAATGAAGACT-TGTTTTTAATTGATTTCTTTAATCGC-AAGTTATTT-ATT 981
|| |||| ||||| || |||| | |||| ||| |||| || ||||||||| |||
Sbjct 979 CA-CATC--TGAAG-CTGTGTTGCTCGTTGAGTTCATTAAGCGATAAGTTATTTTATT 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5