BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495628
Length=596
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55450.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 821 0.0
> AT5G55450.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr5:22467430-22468263
FORWARD LENGTH=740
Length=740
Score = 821 bits (444), Expect = 0.0
Identities = 560/613 (91%), Gaps = 19/613 (3%)
Strand=Plus/Plus
Query 1 GTGAGTCTACCTTGTATTAGCTCTCACTTATCATTAA-CGTTGC-TATATAATAAGCTCA 58
|||||||||||||||| |||||||||||| ||||||| | || | | |||||||||||||
Sbjct 1 GTGAGTCTACCTTGTACTAGCTCTCACTTCTCATTAATCTTTCCTTGTATAATAAGCTCA 60
Query 59 TTACATGTAAGAGCTTCACATATCACAATagagttga--gag--ag-a-aa--g---a-a 106
||||||||||||| |||||||||||||| |||||||| ||| || | || | | |
Sbjct 61 TTACATGTAAGAGTTTCACATATCACAACAGAGTTGAGTGAGAAAGAATAAGGGATTAGA 120
Query 107 aagagagagaATGGGTAAGAACAACACCAGATTCCTCATGCAATTTGCAGTTCTTGCAAT 166
|| |||||||||||||||| ||||||||||| |||||||||||||| ||| ||| || ||
Sbjct 121 AAAAGAGAGAATGGGTAAGGACAACACCAGAATCCTCATGCAATTTTCAGCTCTCGCGAT 180
Query 167 AGTTTTATCCGCTGCAATAATGGTGAAAGAAGCTACAAGCATTCCCGTTTGCAACATCGA 226
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 GGTTTTAACAGCTGCAATAATGGTGAAAGAAGCTACAAGCATTCCCGTTTGCAACATTGA 240
Query 227 CACAAACGACTTGGAGAAATGCCGTCCAGCCGTCACTGGAAACAACCCTCCAC-ATCCGG 285
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 241 CACAAACGACTTGGCGAAATGCCGTCCAGCCGTCACTGGAAACAACCCTCCACCA-CCGG 299
Query 286 GACCGGACTGCTGCGCAGTGGCCAGAGCTGCTAATCTACAATGCCTCTGCCCGTACAAGC 345
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 GACCGGACTGCTGCGCAGTGGCCAGAGTTGCTAATCTACAATGCCTCTGCCCGTACAAGC 359
Query 346 CTTATCTCTCCACTGTTGGGATAGACCCATCTAGAGTCAGGCCTCTTCTTGCCAATTGTG 405
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTTATCTCCCCACTGTCGGGATAGACCCATCTAGAGTCAGGCCTCTTCTTGCCAATTGTG 419
Query 406 GCCTAAACAGTCCTTCCTGTTTCTAAGCTATGAAGAACTGAGCTGAAGACAAGCCG-GTC 464
| ||||||||||||||||||||||||| ||||||||||||||||||| || ||| |||
Sbjct 420 GTGTAAACAGTCCTTCCTGTTTCTAAGC-ATGAAGAACTGAGCTGAAGTCAGGCCCAGTC 478
Query 465 TGCCACAGACTTTGTCTTGCCCTGAAGTCTCTAAGCTATAA-TATGTCTTGTGCTGTTCT 523
| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 479 TCCCACAGACTTTGTCTTGCCCTGAAGTCTCTAAGCTATAAATATGTCTTTTGCTGTTCT 538
Query 524 AATTCGAATAAATGTCAACTTTGCAATGCTTTTTCAGTCACCTTATCTATTATATAGATG 583
||||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 539 GATTCGCATAAATATCAACTTTGCAGTGATTTTTCAGTCACCTTATCTATTATATAGATG 598
Query 584 AACCATGTTCTAC 596
|||||||||||||
Sbjct 599 AACCATGTTCTAC 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28683697937
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5