BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495629

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55460.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   305    2e-82


> AT5G55460.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr5:22468687-22469304 
FORWARD LENGTH=512
Length=512

 Score =  305 bits (165),  Expect = 2e-82
 Identities = 274/322 (85%), Gaps = 25/322 (8%)
 Strand=Plus/Plus

Query  112  CCGTAACTGGAGACAACCCACCATCTCCACGCAAAGAATGTTGTGAAGTCCTCCAAGCCG  171
            |||||| |||||||||||| |||||||||  |||||| ||||||||| ||||||||||||
Sbjct  148  CCGTAATTGGAGACAACCCGCCATCTCCAATCAAAGAGTGTTGTGAACTCCTCCAAGCCG  207

Query  172  CTAATCTGGAATGCATCTGTAGATTCAAGTCTTTTCTCCCCGTTTTAGCGGTTTACCCAT  231
            |||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct  208  CTAATCTGAAATGCATCTGCAGATTCAAGTCTGTTCTCCCCGTTTTAGCGGTTTACCCAT  267

Query  232  CTAAAGTCCAGGCTCTTCTGAGCAAATGTGGCGTTACAACAATCCCTCCTGCTTGCCAAG  291
            |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct  268  CTAAAGTCCAGGCTCTTCTGAGCAAATGTGGCCTGACAACAATCCCTCCTGCTTGCCAAG  327

Query  292  GTAAAATCAAAATACCATAACTTTGAAGAACCGAGGGGGAGACAGACCGCTCTACAGCAG  351
                   |    |    |   |  || |||| |||  |||||||||||| ||||  ||||
Sbjct  328  -------C----T----T---T--GAGGAACTGAGATGGAGACAGACCGTTCTA--GCAG  365

Query  352  ACTTCGCTCGATCTTGTCCTGAAAGTGATCTGAAGTCTTACAATATATCTTAAAGTGTTC  411
            ||||| ||||| ||||||||| || ||||||||||||||||||||| |||||   |||||
Sbjct  366  ACTTCACTCGAACTTGTCCTGCAACTGATCTGAAGTCTTACAATATGTCTTA---TGTTC  422

Query  412  TGATCCAAATAAATCACAAACT  433
             ||||||||||||| |||||||
Sbjct  423  CGATCCAAATAAATTACAAACT  444


 Score =  163 bits (88),  Expect = 1e-39
 Identities = 104/111 (94%), Gaps = 3/111 (3%)
 Strand=Plus/Plus

Query  1    GTCAAGAGAGAATGGATACGAACAATACCAGAACCCATGTGAAATTTGCAGCTCTTGTAA  60
            ||||||||||||||||||||||||||||||||||   |||||||||||||||||||| ||
Sbjct  1    GTCAAGAGAGAATGGATACGAACAATACCAGAAC---TGTGAAATTTGCAGCTCTTGCAA  57

Query  61   CAGTTTTAGCCGCCCTGGTGTTGATGGAAGAACCTACGAGCATTCCCGCAT  111
             ||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  58   TAGTTTTAGCCGCCTTGGTGTTGATGGAAGAACCTACGAGCATTACCGCAT  108



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20559509341


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5