BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495630 Length=1720 Score E Sequences producing significant alignments: (Bits) Value AT5G55470.1 | Symbols: ATNHX3, NHX3 | Na+/H+ (sodium hydrogen) ... 2516 0.0 > AT5G55470.1 | Symbols: ATNHX3, NHX3 | Na+/H+ (sodium hydrogen) exchanger 3 | chr5:22469245-22472706 REVERSE LENGTH=1861 Length=1861 Score = 2516 bits (1362), Expect = 0.0 Identities = 1606/1721 (93%), Gaps = 27/1721 (2%) Strand=Plus/Plus Query 1 AAATCGACGAAATCGAAAACATTCTCGAGATTCTGTGAGAAAATGGGTATTGGATTAACA 60 ||||||||||||||||||||||| || || |||| |||||| |||| ||||||||| Sbjct 87 AAATCGACGAAATCGAAAACATTATC--GA----GTGA-AAAATGAGTATCGGATTAACA 139 Query 61 GAGTTTTTGACGAATAAGCTAGCAGCTGAGCATCCTCAGGTGATCCCAATCTCAGTGTTC 120 |||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 140 GAGTTTGTGACGAATAAACTAGCAGCTGAGCATCCTCAGGTGATACCAATCTCAGTGTTC 199 Query 121 ATTGCCATTCTCTGTCTCTGTTTAGTCATCGGCCACTTGCTTGAAGAGAATCGATGGGTT 180 || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 200 ATCGCCATTCTCTGTCTATGTTTAGTTATCGGCCACTTGCTTGAAGAGAATCGATGGGTT 259 Query 181 AATGAATCCATTACCGCCATTTTAGTCGGAGCAGTATCAGGAACAGTGATCTTGCTTATT 240 |||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||| Sbjct 260 AATGAATCTATTACCGCCATTTTAGTAGGAGCAGCATCAGGAACAGTGATCTTACTTATT 319 Query 241 AGTAAAGGAAAAAGTTCACACATTTTGGTGTTTGATGAAGAACTCTTCTTCATTTACCTT 300 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 320 AGTAAAGGAAAAAGTTCACATATTTTGGTGTTTGATGAAGAACTCTTCTTCATTTACCTT 379 Query 301 CTTCCTCCGATAATTTTCAATGCTGGGTTCCAAGTTAAGAAAAAGAAGTTCTTTCACAAC 360 |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 380 CTTCCTCCAATAATCTTCAATGCTGGGTTCCAAGTTAAGAAAAAGAAGTTTTTTCACAAC 439 Query 361 TTTTTAACCATCATGTCCTTTGGGGTGATTGGAGTTTTTATCTCCACTGTCATTATTTCG 420 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 440 TTTTTAACCATCATGTCCTTTGGTGTGATTGGAGTTTTCATCTCCACTGTCATTATCTCG 499 Query 421 TTTGGGACTTGGTTTCTGTTTCCCAAGTTGGGATTTAAGGGATTGAGTGCTCGAGACTAT 480 ||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 500 TTTGGGACTTGGTGGCTGTTTCCCAAGTTGGGATTTAAGGGGTTGAGTGCTAGAGACTAT 559 Query 481 CTTGCCATCGGGACGATATTCTCGTCAACTGATACAGTCTGCACTCTACAGATTCTCCAT 540 |||||||| || ||||| ||||| ||||||||||| || ||||||||||||||||||||| Sbjct 560 CTTGCCATAGGAACGATTTTCTCATCAACTGATACTGTTTGCACTCTACAGATTCTCCAT 619 Query 541 CAAGATGAAACTCCATTGCTATACAGCTTAGTCTTTGGAGAAGGAGTAGTGAATGATGCA 600 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 620 CAAGATGAAACACCATTGCTATACAGCTTAGTCTTTGGAGAAGGAGTGGTGAATGATGCA 679 Query 601 ACCTCGGTTGTACTGTTCAACGCCGTGCAAAAGATTCATTTTGAAAGCCTAAACGGTTGG 660 ||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 680 ACCTCAGTTGTACTGTTCAACGCCGTGCAAAAGATTCAATTTGAAAGCCTAACCGGTTGG 739 Query 661 ACGGCTCTGCGAGTGTTTGGGAACTTTTTGTACCTCTTCTCGACAAGCACACTTCTCGGA 720 ||||| |||| ||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 740 ACGGCGCTGCAAGTATTTGGGAACTTTTTGTACCTCTTCTCAACAAGCACACTTCTCGGA 799 Query 721 ATTGCTGTGGGGCTAGTAACGTCTTTTGTCCTGAAAACTTTGTATTTTGGAAGACATTCA 780 |||| |||||||||| |||| |||||||| || ||||| |||||||||||||||||||| Sbjct 800 ATTGGTGTGGGGCTAATAACATCTTTTGTTCTTAAAACCTTGTATTTTGGAAGACATTCT 859 Query 781 ACTACACGCGAACTCGCCATCATGGTTCTAATGGCTTACCTTTCATATATGTTGGCTGAG 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 860 ACTACACGCGAACTCGCCATCATGGTTCTAATGGCTTACCTTTCATATATGTTGGCTGAG 919 Query 841 CTCTTCTCATTAAGTGGGATTCTCACAGTTTTCTTCTGTGGTGTTTTAATGTCGCATTAT 900 ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 920 CTCTTCTCATTAAGTGGAATTCTTACTGTTTTCTTCTGTGGTGTTTTAATGTCGCATTAT 979 Query 901 GCATCATATAATGTGACAGAGAGTTCGAGAATCACTTCCAGGCATTGTTTCAGACAATTG 960 ||||||||||| ||||||||||| || |||||||||||||||||| || | ||| Sbjct 980 GCATCATATAACGTGACAGAGAGCTCAAGAATCACTTCCAGGCAT-GTAT-------TTG 1031 Query 961 CATATATTTGCGATGATGTCCTTTATTGCGGAGACATTCATATTTCTGTATGTTGGAACA 1020 || || | | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1032 CA-AT----G---T--TGTCCTTTATTGCGGAGACATTCATATTTCTGTATGTTGGAACA 1081 Query 1021 GATGCTCTTGATGTTACCAAGTGGAATACAAGCAGCTTAAGCGTTGGGGGTACTCTGGGT 1080 |||||||||||| |||| |||||||| ||||||||||||||| ||||||||||||||||| Sbjct 1082 GATGCTCTTGATTTTACAAAGTGGAAGACAAGCAGCTTAAGCTTTGGGGGTACTCTGGGT 1141 Query 1081 GTCTCCAGTGTCATAACCGCATTAGTGTTGCTTGGACGAGCGGCGTTTGTATTTCCGCTC 1140 |||||| ||||||||||||||||||| |||||||||||||| || ||||| ||||| ||| Sbjct 1142 GTCTCCGGTGTCATAACCGCATTAGTATTGCTTGGACGAGCAGCATTTGTCTTTCCACTC 1201 Query 1141 TCGATCTTAACAAATTTCATGAATAGACACACAGAAAGAAACGAGTCTATCACATTTAAG 1200 ||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| Sbjct 1202 TCGGTCTTAACAAATTTCATGAACAGGCACACTGAAAGAAACGAGTCTATCACATTTAAG 1261 Query 1201 CATCAGGTGATCATTTGGTGGGCAGGGCTAATGCGAGGTGCTGTCTCAATTGCTCTGGCT 1260 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1262 CATCAGGTGATCATTTGGTGGGCAGGTCTAATGCGAGGTGCTGTCTCAATTGCTCTGGCT 1321 Query 1261 TTCAAGCAGTTCACATACTCCGGTGTTACATTGGATCCTGTGAATGCTGCCATGGTCACC 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1322 TTCAAGCAGTTCACATACTCCGGTGTTACATTGGATCCTGTGAATGCTGCCATGGTCACC 1381 Query 1321 ACCACCACTATTGTTGTCCTCTTTACTACACTGGTCTTTGGTTTCCTCACAAAGCCACTT 1380 | ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1382 AACACCACTATCGTTGTTCTCTTTACTACACTGGTCTTTGGTTTCCTCACAAAACCACTT 1441 Query 1381 GTGAACTATCTGCTTCCTCATGATGCAAGTCACAACACCAGAAATAGAGGTAAACGTACT 1440 ||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||| ||| Sbjct 1442 GTGAATTATCTCCTTCCTCAAGATGCAAGTCACAACACCGGAAATAGAGGTAAACGCACT 1501 Query 1441 GAGCCAGGTTCCCC-AAAGGAAGATGCGACGCTTCCTCTTCTTTCCTTTGACGAGTCTGC 1499 ||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 1502 GAGCCAGGTTCTCCGAAAG-AAGATGCGACACTTCCTCTTCTTTCCTTTGACGAGTCTGC 1560 Query 1500 TTCCACCAACTTCAATAGAGCAAAAGATAGTATCTCCCTTCTGATGGAACAACCTGTGTA 1559 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1561 TTCCACCAACTTCAATAGAGCTAAAGATAGTATTTCCCTTCTGATGGAACAACCTGTGTA 1620 Query 1560 CACCATCCACCGCTACTGGAGAAAGTTCGACGACACATACATGAGGCCTATCTTCGGTGG 1619 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1621 CACCATCCACCGCTACTGGAGAAAGTTTGACGACACATACATGAGGCCTATCTTCGGTGG 1680 Query 1620 ACCTCGTCGAGAAAACCAACCAGAATGCTAGAATTGATTTGGGTTCTCCGCGGGGAAGGC 1679 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1681 ACCTCGTCGAGAAAACCAACCAGAATGCTAGAATTGATCCGGGTTCTCCGCGGGGAAATC 1740 Query 1680 ATGATGAGTTAGttttttttATAGTCCACAAAGTAGGATAG 1720 |||||||||||||||||||||||||| | |||||||||||| Sbjct 1741 ATGATGAGTTAGTTTTTTTTATAGTCAAGAAAGTAGGATAG 1781 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85039723230 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5