BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495630
Length=1720
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55470.1 | Symbols: ATNHX3, NHX3 | Na+/H+ (sodium hydrogen) ... 2516 0.0
> AT5G55470.1 | Symbols: ATNHX3, NHX3 | Na+/H+ (sodium hydrogen)
exchanger 3 | chr5:22469245-22472706 REVERSE LENGTH=1861
Length=1861
Score = 2516 bits (1362), Expect = 0.0
Identities = 1606/1721 (93%), Gaps = 27/1721 (2%)
Strand=Plus/Plus
Query 1 AAATCGACGAAATCGAAAACATTCTCGAGATTCTGTGAGAAAATGGGTATTGGATTAACA 60
||||||||||||||||||||||| || || |||| |||||| |||| |||||||||
Sbjct 87 AAATCGACGAAATCGAAAACATTATC--GA----GTGA-AAAATGAGTATCGGATTAACA 139
Query 61 GAGTTTTTGACGAATAAGCTAGCAGCTGAGCATCCTCAGGTGATCCCAATCTCAGTGTTC 120
|||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 140 GAGTTTGTGACGAATAAACTAGCAGCTGAGCATCCTCAGGTGATACCAATCTCAGTGTTC 199
Query 121 ATTGCCATTCTCTGTCTCTGTTTAGTCATCGGCCACTTGCTTGAAGAGAATCGATGGGTT 180
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 200 ATCGCCATTCTCTGTCTATGTTTAGTTATCGGCCACTTGCTTGAAGAGAATCGATGGGTT 259
Query 181 AATGAATCCATTACCGCCATTTTAGTCGGAGCAGTATCAGGAACAGTGATCTTGCTTATT 240
|||||||| ||||||||||||||||| ||||||| |||||||||||||||||| ||||||
Sbjct 260 AATGAATCTATTACCGCCATTTTAGTAGGAGCAGCATCAGGAACAGTGATCTTACTTATT 319
Query 241 AGTAAAGGAAAAAGTTCACACATTTTGGTGTTTGATGAAGAACTCTTCTTCATTTACCTT 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 320 AGTAAAGGAAAAAGTTCACATATTTTGGTGTTTGATGAAGAACTCTTCTTCATTTACCTT 379
Query 301 CTTCCTCCGATAATTTTCAATGCTGGGTTCCAAGTTAAGAAAAAGAAGTTCTTTCACAAC 360
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 380 CTTCCTCCAATAATCTTCAATGCTGGGTTCCAAGTTAAGAAAAAGAAGTTTTTTCACAAC 439
Query 361 TTTTTAACCATCATGTCCTTTGGGGTGATTGGAGTTTTTATCTCCACTGTCATTATTTCG 420
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 440 TTTTTAACCATCATGTCCTTTGGTGTGATTGGAGTTTTCATCTCCACTGTCATTATCTCG 499
Query 421 TTTGGGACTTGGTTTCTGTTTCCCAAGTTGGGATTTAAGGGATTGAGTGCTCGAGACTAT 480
||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 500 TTTGGGACTTGGTGGCTGTTTCCCAAGTTGGGATTTAAGGGGTTGAGTGCTAGAGACTAT 559
Query 481 CTTGCCATCGGGACGATATTCTCGTCAACTGATACAGTCTGCACTCTACAGATTCTCCAT 540
|||||||| || ||||| ||||| ||||||||||| || |||||||||||||||||||||
Sbjct 560 CTTGCCATAGGAACGATTTTCTCATCAACTGATACTGTTTGCACTCTACAGATTCTCCAT 619
Query 541 CAAGATGAAACTCCATTGCTATACAGCTTAGTCTTTGGAGAAGGAGTAGTGAATGATGCA 600
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 620 CAAGATGAAACACCATTGCTATACAGCTTAGTCTTTGGAGAAGGAGTGGTGAATGATGCA 679
Query 601 ACCTCGGTTGTACTGTTCAACGCCGTGCAAAAGATTCATTTTGAAAGCCTAAACGGTTGG 660
||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 680 ACCTCAGTTGTACTGTTCAACGCCGTGCAAAAGATTCAATTTGAAAGCCTAACCGGTTGG 739
Query 661 ACGGCTCTGCGAGTGTTTGGGAACTTTTTGTACCTCTTCTCGACAAGCACACTTCTCGGA 720
||||| |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 740 ACGGCGCTGCAAGTATTTGGGAACTTTTTGTACCTCTTCTCAACAAGCACACTTCTCGGA 799
Query 721 ATTGCTGTGGGGCTAGTAACGTCTTTTGTCCTGAAAACTTTGTATTTTGGAAGACATTCA 780
|||| |||||||||| |||| |||||||| || ||||| ||||||||||||||||||||
Sbjct 800 ATTGGTGTGGGGCTAATAACATCTTTTGTTCTTAAAACCTTGTATTTTGGAAGACATTCT 859
Query 781 ACTACACGCGAACTCGCCATCATGGTTCTAATGGCTTACCTTTCATATATGTTGGCTGAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 ACTACACGCGAACTCGCCATCATGGTTCTAATGGCTTACCTTTCATATATGTTGGCTGAG 919
Query 841 CTCTTCTCATTAAGTGGGATTCTCACAGTTTTCTTCTGTGGTGTTTTAATGTCGCATTAT 900
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 920 CTCTTCTCATTAAGTGGAATTCTTACTGTTTTCTTCTGTGGTGTTTTAATGTCGCATTAT 979
Query 901 GCATCATATAATGTGACAGAGAGTTCGAGAATCACTTCCAGGCATTGTTTCAGACAATTG 960
||||||||||| ||||||||||| || |||||||||||||||||| || | |||
Sbjct 980 GCATCATATAACGTGACAGAGAGCTCAAGAATCACTTCCAGGCAT-GTAT-------TTG 1031
Query 961 CATATATTTGCGATGATGTCCTTTATTGCGGAGACATTCATATTTCTGTATGTTGGAACA 1020
|| || | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 CA-AT----G---T--TGTCCTTTATTGCGGAGACATTCATATTTCTGTATGTTGGAACA 1081
Query 1021 GATGCTCTTGATGTTACCAAGTGGAATACAAGCAGCTTAAGCGTTGGGGGTACTCTGGGT 1080
|||||||||||| |||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1082 GATGCTCTTGATTTTACAAAGTGGAAGACAAGCAGCTTAAGCTTTGGGGGTACTCTGGGT 1141
Query 1081 GTCTCCAGTGTCATAACCGCATTAGTGTTGCTTGGACGAGCGGCGTTTGTATTTCCGCTC 1140
|||||| ||||||||||||||||||| |||||||||||||| || ||||| ||||| |||
Sbjct 1142 GTCTCCGGTGTCATAACCGCATTAGTATTGCTTGGACGAGCAGCATTTGTCTTTCCACTC 1201
Query 1141 TCGATCTTAACAAATTTCATGAATAGACACACAGAAAGAAACGAGTCTATCACATTTAAG 1200
||| ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1202 TCGGTCTTAACAAATTTCATGAACAGGCACACTGAAAGAAACGAGTCTATCACATTTAAG 1261
Query 1201 CATCAGGTGATCATTTGGTGGGCAGGGCTAATGCGAGGTGCTGTCTCAATTGCTCTGGCT 1260
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1262 CATCAGGTGATCATTTGGTGGGCAGGTCTAATGCGAGGTGCTGTCTCAATTGCTCTGGCT 1321
Query 1261 TTCAAGCAGTTCACATACTCCGGTGTTACATTGGATCCTGTGAATGCTGCCATGGTCACC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TTCAAGCAGTTCACATACTCCGGTGTTACATTGGATCCTGTGAATGCTGCCATGGTCACC 1381
Query 1321 ACCACCACTATTGTTGTCCTCTTTACTACACTGGTCTTTGGTTTCCTCACAAAGCCACTT 1380
| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1382 AACACCACTATCGTTGTTCTCTTTACTACACTGGTCTTTGGTTTCCTCACAAAACCACTT 1441
Query 1381 GTGAACTATCTGCTTCCTCATGATGCAAGTCACAACACCAGAAATAGAGGTAAACGTACT 1440
||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 1442 GTGAATTATCTCCTTCCTCAAGATGCAAGTCACAACACCGGAAATAGAGGTAAACGCACT 1501
Query 1441 GAGCCAGGTTCCCC-AAAGGAAGATGCGACGCTTCCTCTTCTTTCCTTTGACGAGTCTGC 1499
||||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1502 GAGCCAGGTTCTCCGAAAG-AAGATGCGACACTTCCTCTTCTTTCCTTTGACGAGTCTGC 1560
Query 1500 TTCCACCAACTTCAATAGAGCAAAAGATAGTATCTCCCTTCTGATGGAACAACCTGTGTA 1559
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1561 TTCCACCAACTTCAATAGAGCTAAAGATAGTATTTCCCTTCTGATGGAACAACCTGTGTA 1620
Query 1560 CACCATCCACCGCTACTGGAGAAAGTTCGACGACACATACATGAGGCCTATCTTCGGTGG 1619
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1621 CACCATCCACCGCTACTGGAGAAAGTTTGACGACACATACATGAGGCCTATCTTCGGTGG 1680
Query 1620 ACCTCGTCGAGAAAACCAACCAGAATGCTAGAATTGATTTGGGTTCTCCGCGGGGAAGGC 1679
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1681 ACCTCGTCGAGAAAACCAACCAGAATGCTAGAATTGATCCGGGTTCTCCGCGGGGAAATC 1740
Query 1680 ATGATGAGTTAGttttttttATAGTCCACAAAGTAGGATAG 1720
|||||||||||||||||||||||||| | ||||||||||||
Sbjct 1741 ATGATGAGTTAGTTTTTTTTATAGTCAAGAAAGTAGGATAG 1781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85039723230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5