BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495631
Length=2559
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55480.1 | Symbols: SVL1 | SHV3-like 1 | chr5:22474230-22478... 3973 0.0
> AT5G55480.1 | Symbols: SVL1 | SHV3-like 1 | chr5:22474230-22478132
FORWARD LENGTH=2661
Length=2661
Score = 3973 bits (2151), Expect = 0.0
Identities = 2441/2579 (95%), Gaps = 28/2579 (1%)
Strand=Plus/Plus
Query 1 GGTCGAAGTTGGTGAAGTCGCCGCCGGGATAACTCAGGTT-TCT-CA-CTG------ATG 51
||||||||||||||||||||||||||||| |||||||||| | | || || |||
Sbjct 1 GGTCGAAGTTGGTGAAGTCGCCGCCGGGACAACTCAGGTTGT-TACAGATGATAAACATG 59
Query 52 CGAGATAATCCAACAATGCATGGCTTACAAGCTTCAAAGTTTCT-TCTTTTAGCTCTCAT 110
|||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| ||
Sbjct 60 CGAGATAATCCAACAATGCATGTCTTACAAGCTTCAAAGTTTCTAT-TTTTAGCTCTTAT 118
Query 111 TTTGATCCACTTGCTATCTACTCAACTCTTTGCTCAAAGATCTAAAAGCCCATGGCAGAC 170
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 119 TTTGATCCAGTTGCTGTCTACTCAACTCTTTGCTCAAAGATCTAAAAGTCCATGGCAAAC 178
Query 171 ACTCACTGGAGATGCTCCTCGTATCATTGCTCGTGGTGGGTTTTCTGGGTTGTTGCCAGA 230
|||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 179 ACTCACTGGAGATGCTCCCCTTGTCATTGCTCGTGGTGGGTTTTCTGGGTTGTTGCCAGA 238
Query 231 TTCAAGTGTCGATGCTTATAGTTTTGTATCGCAGACTAGTGTTCCTGGTACTCTTCTTTG 290
||||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 239 TTCAAGTCTCGATGCTTACAGTTTTGTATCGCAGACTAGTGTTCCTGGTGCTGTTCTTTG 298
Query 291 GTGTGATGTGCAACTAACGAAAGATGCAATTGGGA-TTTGCTTCCCTGATGTGAAAATGA 349
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct 299 GTGTGATGTGCAACTAACGAAAGATGCAATT-GGACTTTGCTTCCCTGATGTGAAGATGA 357
Query 350 TGAATGCTTCTC-ATATTCAAGATGTTTACCCTAAACGGAAGAA-TTCTTACTTGCTTAA 407
|||||||||| | |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 358 TGAATGCTTC-CAATATTCAAGATGTTTACCCTAAACGGAA-AACTTCTTACTTGCTTAA 415
Query 408 TGGAGTCCTTACTCAGGATTGGTTCACCATTGATTTCAACTTCAAGGATTTGA-ATACCG 466
|||||||| |||||||||||||||||||||||||||||||||||||||| ||| | | |
Sbjct 416 TGGAGTCCCTACTCAGGATTGGTTCACCATTGATTTCAACTTCAAGGATCTGACA-AAAG 474
Query 467 TTTTCTTGAAACAAGGAATATTATCGCGGTCAGATGCATTCGAAGGAAACAATTACGCGA 526
|| |||||||||||||||||||||| ||||||| |||||||| ||||||| ||||| ||
Sbjct 475 TTATCTTGAAACAAGGAATATTATCACGGTCAGCGGCATTCGATGGAAACAGTTACGGGA 534
Query 527 TATCAACAGTTAAAGATATATCTACGCAGTTAAAACCTGAGGGTTTTTGGTTAAATGTTC 586
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TATCGACAGTTAAAGATATATCTACGCAGTTAAAACCTGAGGGTTTTTGGTTAAATGTTC 594
Query 587 AGCACGACGCATTCTATGCTCAACACAATCTGAGCATGAGCAGCTTTCTGCTATCAATTT 646
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 595 AGCACGACGCATTCTATGCTCAACATAATCTGAGCATGAGCAGCTTTCTGCTATCAATTT 654
Query 647 CCAAAACTGTGATTATTGACTATCTCTCTTCCCCTGAGGTGAATTTCTTTCGGAACATTG 706
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CCAAGACTGTGATTATTGACTATCTCTCTTCCCCTGAGGTGAATTTCTTTCGGAACATTG 714
Query 707 GTAGCCGTTTTGGACGCAAGGGGCCAAAGTTTGTGTTCAGGTTTCTCGAGAAAGATGATG 766
|||| |||||||||||||| |||||||||||||||||| ||||||| || ||||||||||
Sbjct 715 GTAGGCGTTTTGGACGCAATGGGCCAAAGTTTGTGTTCCGGTTTCTTGAAAAAGATGATG 774
Query 767 TTGAGGTGTCAACCAACCAAACCTATGGATCTCTTGCGGGAAACCTAACTTTTGTCAAGA 826
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 775 TTGAGGTGTCAACCAACCAAACCTATGGATCTCTTGCGGGAAACCTAACATTCCTCAAGA 834
Query 827 CGTTCGCTTCAGGAATTCTTGTTCCCAAATCTTACATATGGCCGGTCGAAAGCCAATACT 886
| || ||||||||| ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 835 CTTTTGCTTCAGGAGTTCTTGTTCCCAAGTCTTACATATGGCCAATCGAAAGCCAATACT 894
Query 887 TGCTTCCCCATACATCCTTTGTTCAAGATGCTCATAAAGCAGGATTAGAAGTATATGCAT 946
||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 895 TGCTTCCCCGTACATCTTTTGTTCAAGATGCTCACAAAGCAGGATTAGAAGTATATGCAT 954
Query 947 CAGGTTTTGCAAACGACTTTGATCTTGCATACAACTACAGTTTTGATCCATTGGCCGAGT 1006
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CAGGTTTTGGAAACGATTTTGATCTTGCATACAACTACAGTTTTGATCCATTGGCCGAGT 1014
Query 1007 ACTTATCTTTCGTGGACAATGGAGATTTCTCCGTGGATGGCGTGCTTTCTGATTTTCCAC 1066
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1015 ACTTATCTTTCATGGACAATGGAGATTTCTCCGTGGATGGCTTGCTTTCTGATTTCCCAC 1074
Query 1067 TTACAGCATCTTCAGCTGTTGACTGCTTCTCCCATCTTGGAAGTAATGCTTCATCACAAG 1126
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TAACAGCATCTTCAGCTGTTGACTGCTTCTCCCATCTTGGAAGTAATGCTTCATCACAAG 1134
Query 1127 TGGATTTTCTTGTTATATCCAAAAATGGAGCAAGTGGAGACTACCCTGGCTGTACTGACT 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TGGATTTTCTTGTTATATCCAAAAATGGAGCAAGTGGAGACTACCCTGGCTGTACTGACT 1194
Query 1187 TGGCCTATACAAAGGCTATCGAAGATGGTGCTGATGTTATTGATTGTTCTCTTCAAATGT 1246
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1195 TGGCCTATACAAAGGCTATCAAAGATGGTGCTGATGTTATCGATTGTTCTCTTCAAATGT 1254
Query 1247 CATCAGACGGTATTCCGTTTTGCTCAAGTTCAATTAATCTTGGGGATAGCACAAACGTTG 1306
|||||||||| ||||||||||||| ||||||||| ||||||||||| ||||| |||||||
Sbjct 1255 CATCAGACGGGATTCCGTTTTGCTTAAGTTCAATAAATCTTGGGGAGAGCACGAACGTTG 1314
Query 1307 TCCAAAGTCCTTTCAGAAACCGTTCTACAACTGTTCCTGAGATCGGCTCACTTCCTGGAA 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TCCAAAGTCCTTTCAGAAACCGTTCTACAACTGTTCCTGAGATCGGCTCACTTCCTGGAA 1374
Query 1367 TATACAGCTTTAGTCTGGCATGGTCTGAGATTCAGACATTGAGACCTGCTATTGAAAACC 1426
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1375 TATACAGCTTTAGTCTGGCATGGTCTGAGATTCAGACCTTGAGACCTGCTATTGAAAACC 1434
Query 1427 CCTACAGCAGGGAATTCACTTTGTTTAGGAATCCAAGGGAGAAAAGTTCCGGGAAGTTTG 1486
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1435 CCTACAGCAGGGAATTCACTATGTTTAGGAATCCAAGGGAGAGAAGTTCCGGGAAGTTTG 1494
Query 1487 TTACGCTTTCTGATTTCTTGAACTTGGCAAAAAACTCCAGCTCTCTCGCCGGTGTTTTGA 1546
|| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1495 TTTCACTTTCTGATTTCTTGAACTTGGCAAAAAACTCCAGCTCTCTCACCGGTGTTTTGA 1554
Query 1547 TCAGCGTGGAGAATGCAACATACCTGAGAGAGAAGCAAGGGCTCGACGCTGTTAAGGCAG 1606
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1555 TCAGCGTGGAGAATGCAACATATCTGAGAGAGAAGCAAGGGCTCGATGCTGTTAAGGCAG 1614
Query 1607 TTCTCGATACACTCACAGAAGCTGGTTACAGCAACAAGACAACAACCACAAGGGTTATGA 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TTCTCGATACACTCACAGAAGCTGGTTACAGCAACAAGACAACAACCACAAGGGTTATGA 1674
Query 1667 TTCAGTCAACTAACAGCTCAGTCTTAGTTGAATTCAAGAAACAGAGCCGGTACGAGACAG 1726
|||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct 1675 TTCAGTCAACTAACAGCTCAGTCTTAATTGACTTCAAGAAACAGAGCCGGTATGAGACAG 1734
Query 1727 TGTACAAAGTCGAAGAAGTCATCCGCGACATCCTCGACTCTGCAATCGAAGACATTAAGA 1786
||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||
Sbjct 1735 TGTACAAAGTCGAAGAAACCATCCGCGACATTCTCGACACTGCAATCGAAGACATTAAGA 1794
Query 1787 AATTTGCGGATGCTGTTGTCATTAG-AAAAACATCAGTCTTCCCCACCAGCGAAAGTTTC 1845
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1795 AATTTGCGGATGCTGTTGTCATTAGTAAAAA-ATCAGTCTTCCCCACCAGCGAAAGTTTC 1853
Query 1846 ACCACTGGACAAACTAAACTAGTGGAGAGGCTGCAGAAGTTTCAGCTTCCCGTTTACGTT 1905
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1854 ACCACTGGACAAACTAAACTAGTGGAGAGGCTGCAGAAGTTTCAGCTCCCCGTTTACGTT 1913
Query 1906 GAAGTGTTCCGGAACGAGTTTGTTTCTCAACCATGGGATTTCTTCGCCGATGCAACTGTC 1965
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1914 GAAGTGTTCCGAAATGAGTTTGTTTCTCAACCATGGGATTTCTTCGCTGATGCAACTGTC 1973
Query 1966 GAGATAAACTCGCATGTTACTGGAGCTGGTATCAATGGAACAATCACTGACTTCCCTCTC 2025
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1974 GAGATAAACTCGCATGTTACTGGAGCTGGTATCAATGGAACCATCACTGAGTTCCCTCTC 2033
Query 2026 ACAGCCGCGAGATACAAAAGGAACTCGTGCTTGACCCGCAAAGACCCGCCTCCTTACATG 2085
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2034 ACAGCCGCGAGATACAAAAGGAACTCGTGCTTGACCCGCAAAGACGTGCCTCCTTACATG 2093
Query 2086 ATCCCAGTTCAGCCTGCTGGCCTCTTAACCATCGTGAGTCCTGCTTCTTTACCTCCAGCC 2145
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2094 ATCCCAGTTCAGCCCGCTGGCCTCTTAACCATCGTGAGTCCTGCTTCGTTACCTCCAGCC 2153
Query 2146 GAAGCACCAAGCCCAGTTTTCACAGATGCTGATGTCACTGAACCACCATTACCTCCAGTC 2205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 GAAGCACCAAGCCCAGTTTTCACAGATGCTGATGTCACTGAACCACCATTACCTCCAGTC 2213
Query 2206 ACAGCCAGAGCCCCAACCACCACCCCTGGACCACAGTCAACAGGTGAAAAGACTCCCAAC 2265
||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 2214 TCAGCCAGAGCCCCAACCACCACCCCTGGACCTCAATCAACAGGTGAAAAGTCTCCCAAC 2273
Query 2266 GGACACACCCGAGTCGCTCAATCTCTTCTTCTTTCTGCATTTGCTACGGTTTTTGCCTCT 2325
||||| ||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||
Sbjct 2274 GGACAAACCCGAGTCGCTCTATCTCTTCTTCTCTCTGCATTCGCTACGGTTTTCGCCTCT 2333
Query 2326 CTTCTACTTGTGTGATCGCATTGATCCTG-TCACCCGCGCCAGTAGAATTTCTTTGTGAG 2384
||||||||| ||||||| ||||||||| | ||||||||||| |||| ||||| |||||||
Sbjct 2334 CTTCTACTTCTGTGATCACATTGATCC-GATCACCCGCGCCTGTAGGATTTCATTGTGAG 2392
Query 2385 ATTGATTGAGTCCTCAGGAAAttttttt-CCTCCTAACAGTTCTTGAGATTCTTTGCAGT 2443
|||||| ||||||||||| ||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 2393 ATTGATCGAGTCCTCAGGGAATTTTTTTTCCTTCTAACAGTTCTTGGGATTCTTTGCAGT 2452
Query 2444 GATGAGTTTCTTGTCTGTTCATATTCTTCGTTATCTTT-GTT-AATTTCCGGCCAAAGAA 2501
||||||||||||||||||||||||| |||||| ||||| || |||||| |||||||||
Sbjct 2453 GATGAGTTTCTTGTCTGTTCATATTATTCGTTGTCTTTTGTAGAATTTCTGGCCAAAGAG 2512
Query 2502 GTAAA-TTCTTGGACGTAAATTTGTATCATTGTTGTAACATTAATCACTGTAATCTTCT 2559
||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 2513 GTAAAATTCTTGGACGTAAATTTGTATCATTGTTGTAACATTATTCACTGTAATGTTCT 2571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127022699676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5