BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495632
Length=1981
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55490.1 | Symbols: ATGEX1, GEX1 | gamete expressed protein ... 2848 0.0
> AT5G55490.1 | Symbols: ATGEX1, GEX1 | gamete expressed protein
1 | chr5:22478712-22481148 REVERSE LENGTH=1969
Length=1969
Score = 2848 bits (1542), Expect = 0.0
Identities = 1846/1990 (93%), Gaps = 32/1990 (2%)
Strand=Plus/Plus
Query 1 GTTCTGTCTCTTTTGTTTGTTCGTAGGTGATCAATCACAAATCTCCTCAACAAGAAGAAG 60
|||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 1 GTTCTGTCTCTTTTGTTTGTTCGTAGGTGATCAATCACAAGGCTCCTCGAGAAGAAGAAG 60
Query 61 ATCAAAAAACCGATTAAATGGATCGTTTGAGCAGAAAATTTCTTATG--T-TTCTATTGA 117
||| ||| ||||||||||||||||||| |||||||||| |||| || | |||||||||
Sbjct 61 ATCTCAAATCCGATTAAATGGATCGTTTCAGCAGAAAATGTCTTCTGTTTCTTCTATTGA 120
Query 118 TCGTACTTTTAGATTCTCCATTAACATGCCACAGTTGGGGATGGttctcttcttcctctt 177
|| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 121 TCATACTTTTAGATTCTCCATTAACATGCCACAGTTGGGGATGGTTCTCTTC-T--TCTT 177
Query 178 cttcctcagcaaaagatacatactcttcttctttctctcggtcttACAAATCCAACCCGG 237
||||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||| |
Sbjct 178 CTTCCTCAGCAGAAGATCCATACTCTTCTTCTTTTTCTCGGTCTCGCAAATCCAACCCCG 237
Query 238 ACTTCTCCATGGAAGTTTTCAGTGATCAGAAGGCGGTTCGAGTCCTTAAAGACGCTAAAA 297
||||||||||||||||||||||||||||||||||||||| ||||||| | |||
Sbjct 238 ACTTCTCCATGGAAGTTTTCAGTGATCAGAAGGCGGTTCAAGTCCTT------G---AAA 288
Query 298 ACAAACTTGATGGTCCAAACAGTTGCTGGCAAAATGCTTATAGTTACCTCTTCACTGGCT 357
|||| |||| ||||| || ||||||||||||||||||||||||||||||||| ||||||
Sbjct 289 ACAAGCTTGTTGGTCTAACCAGTTGCTGGCAAAATGCTTATAGTTACCTCTTGGCTGGCT 348
Query 358 GCAAAGAAACGATTGCTACAGAAGAAAAGAGAAAGAGATTTGCTTGGTATTTGAGTGATT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 349 GCAAAGAAACGATTGCTACAGAAGAAAAGAGAAAGAGATTTGCTTGGTATTTGAGCGATT 408
Query 418 GCTTCATCAAAGACTCGGGAAGAACTGCTTTTCCAACCTGTAAAGATGAATCAACAATGA 477
||||||||||||||||||||||| | || |||||||||||||||||||||||| |||||
Sbjct 409 GCTTCATCAAAGACTCGGGAAGACCGGCGTTTCCAACCTGTAAAGATGAATCAGTAATGA 468
Query 478 TGAGTTGCCTCAAGAAGCTGGATGATCATGAGCATAAGATCTATCTCGATTTCTTGCTTG 537
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TGAGTTGCCTCAAGAAGCTTGATGATCATGAGCATAAGATCTATCTCGATTTCTTGCTTG 528
Query 538 AAACCAACACCATCTGCCAACAATTACAGAGTTATGCATTCAAGCATGAGATAGAGAGGC 597
|||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 529 AAACCAACACCATCTGCCAACAATTACAGAGTAATGCGTTCAAAAATGAGATAGAGAGGC 588
Query 598 TTGTGAATGAACTCAAGAGTACAGCTCAGAATACAGAAGATAAATTGGATATCTTGGAGA 657
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 589 TTGTGAATGAGCTCAAGAATACAGCTCAGTATACAGAAGATAAATTGGATATCTTGGAGA 648
Query 658 GTAAATCTGATTCTTTAATACAGACCTCGAGCATGATTCATGATTCTTTAGGTTCACTAG 717
||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 649 GTAAATCTGATGCTTTAATACAGACCTCAAGCATGATTCATGATTCTTTAGGGTCACTAG 708
Query 718 ATGTCCGGGTTCAAAACGTGGCTCA-TGTGGCAAACACCTTAGAAACTAGTGTGAGTGGA 776
|||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 709 ATGTTCGGGTTCAAAACGTGGCT-AGTGTGACAAACACCTTAGAAACTAGTGTGAGTGGA 767
Query 777 CTGTCTCAACAAACTGTAGAAATCTCTCAAGAACAAAAGAACATTGCAGAATCACAGCTT 836
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 768 TTATCTCAACAAACAGTAGAAATCTCTCAAGAACAGAAGAACATTGCAGAATCACAGCTA 827
Query 837 GCGCTAATGGACGGTCAAGTGAAGATGAAAGAAACGTTGAAAGATGGAATGGAGATGTTC 896
|| || | |||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 828 GCTCTCAGGGACGGTCAAGTAAAGATGAAAGAAACGTTGAAAGATGGAATGGACATGTTC 887
Query 897 AGCGATGCGTATACTAACATCCAAGAAGGAGTAGATAAGTTGAAAAGCGATACTA-AGCA 955
|||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||
Sbjct 888 CTCGATGCGTATACTAACATCCAAGAAGGAGTAGATAAGTTGAAGAGTGATAC-AGAGCA 946
Query 956 GATTGAGGTGGAAATAAGTGTACTTGGAAATAACCTATCAACCAAAATGGTAGATTTGCA 1015
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 947 GATTGAGGTGGAAATAAGTGTACTTGGAAATAACCTATCAACCAAAATGATAGATTTGCA 1006
Query 1016 GAGTACAACCGAAGACATCGGAATTAAGGCTGGTAGTTCGTTGGAAAAACAACAGAAGCT 1075
|||||||||||| |||||||||| ||| || ||||||||||||| ||||||||||||||
Sbjct 1007 GAGTACAACCGATGACATCGGAACAAAGACTCGTAGTTCGTTGGATAAACAACAGAAGCT 1066
Query 1076 TTTAGACGGGCAATCTGTGGCTCTTGACGGTATTCAGTTTCTTACTCGGTTTCAGTCTGA 1135
||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1067 TTTAGACGGCCAAACCGTGGCTCTTGACGGTATTCAGTTTCTTACCCGGTTTCAGTCTGA 1126
Query 1136 GGCACTGCAAGAGAGTAGGAGTACCTTGAAACGTTTGACGGAATTTAGTCAGGAGCAACA 1195
|||||||||||||||||||| ||| ||| ||||||||| ||||||||||||||||||||
Sbjct 1127 GGCACTGCAAGAGAGTAGGAATACATTGCAACGTTTGAAAGAATTTAGTCAGGAGCAACA 1186
Query 1196 GGAAGATCTTGCAAAGCGGCAAGAAAAGCTTCAGGAGGTTCATGATCACCTGTTTGAAAA 1255
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1187 AGAAGATCTTGCAAAGCGGCAAGAAAAGCTTCAGGAGGTTCATGATCACTTGTTTGAAAA 1246
Query 1256 TTCAAAATCAATGTTAGAAGCTCAGGAAGCGTTTGAGGCGAAACAAGCAAACATGTTTGT 1315
||||||||||||||| ||||| |||| |||||||||||| ||||||||||||||||||||
Sbjct 1247 TTCAAAATCAATGTTGGAAGCCCAGGTAGCGTTTGAGGCTAAACAAGCAAACATGTTTGT 1306
Query 1316 AGCTTTGGATAAGCTGTTTGCTCTGCACAATGCGATGCTTCTCGAGTCCCGAGTGATAAA 1375
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1307 AGCTTTGGATAAGCTGTTTGCTTTGCACAATGCGATGCTTCTCGAGTCGCGAGTGATAAA 1366
Query 1376 AGCCTTCGTCATCTACTTCTTGTCAATCTTTGTCATCTACATGTTTACAAGTACAAAACA 1435
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1367 AGCCTTTGTCATCTACTTCTTGTCAATCTTTGTCATCTACATGTTTACAAGCACAAAACA 1426
Query 1436 AACTTATATCATAAGGCCAAGGCTTTACATTGGTTTGTGCGTTACTCTGGCATTAGAAGT 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 AACTTATATCATAAGGCCAAGGCTTTACATTGGTTTGTGCGTTACTCTGGCATTAGAAGT 1486
Query 1496 GGCAAGTTTGCGATACGTGAATGATACAGAACGCCAAGCATGGATTATAAACCTAATCAG 1555
||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1487 GGCGAGTTTACGATACGTGAATGATACAGAACGCCAAGCATGGATGATAAACCTTATCAG 1546
Query 1556 GTCTTTATTTGCTCTTCTTGCTTCAGCTCAGCTTCTTCATGCTGCTTTTTCATACAGGGA 1615
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1547 GTCTTTATTTGCTCTTCTTGCTTCAGCTCAGCTTCTACATGCTGCTTTGTCATACAGGGA 1606
Query 1616 CTATGAAGTACTAAACCATCAAATCTTGTTAAGATTAGTTGATAAGGTTAATGGCATGCA 1675
|||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||||
Sbjct 1607 CTATGAAGTACTAAACCATCAAATCTTGCTAAGATTAGTTGATAAAGTGAATGACATGCA 1666
Query 1676 AAGCAATAAAGATCTCTCGTACGATGAAGATACAGAGAGCGAGGTAGATTGGACATCTTG 1735
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 AAGCAAGAAAGAGCTCTCGTACGATGAAGATACAGAGAGCGAGGTAGATTGGACATCTTG 1726
Query 1736 GGTTGATACAGATTTAACAGATGATGATGACAATCTTGGAGATCCTGATTACAGAATTCC 1795
|||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 1727 GGTTGATACAGATTTAACTGATGATGATGACAATCTTGCAGATCCTGATTACAAAATCCC 1786
Query 1796 ACTAGTGATCAAGGACAATCCGGTTACCACTTCATCAATGACTAGAAGATTGTATAATTT 1855
|||| ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1787 ACTACTGATCAAAGACAATCCGGTTACTACTTCATCATTGACTAGAAGATTGTATAATTT 1846
Query 1856 CAGTCCACGATAGCCAGCAAA-TCTTTCACTCAA-GTTGAAACTACATTAGTTTTATTAT 1913
| |||||||||||||| |||| | |||||||||| || |||||||||||||| ||| ||
Sbjct 1847 CCGTCCACGATAGCCACCAAAGTTTTTCACTCAAAGTCGAAACTACATTAGTCATAT-AT 1905
Query 1914 -TA-CATTAGGGAAACTTTACATTGTTCCCAGCCAGTGGATCAAAACTATAATTATATGG 1971
|| | |||||||||||| ||||||| | | |||||||||||||||||||||||
Sbjct 1906 GTATC-TTAGGGAAACTTCACATTGT----ATC---TGGATCAAAACTATAATTATATGC 1957
Query 1972 TATAGTTTTT 1981
||||||||||
Sbjct 1958 TATAGTTTTT 1967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98142065475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5