BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495634
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55510.1 | Symbols: | Mitochondrial import inner membrane t... 1146 0.0
AT4G26670.1 | Symbols: | Mitochondrial import inner membrane t... 514 5e-145
> AT5G55510.1 | Symbols: | Mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein | chr5:22486426-22488015
REVERSE LENGTH=843
Length=843
Score = 1146 bits (620), Expect = 0.0
Identities = 769/837 (92%), Gaps = 26/837 (3%)
Strand=Plus/Plus
Query 1 GTGTTTGGCTACAGGTATAAAAATAAACAAACTCTGTTTCTAATTTTTGAAGATTAGGTA 60
||||||||||||||| | |||| || |||||||||||||||||||||||||||||||||
Sbjct 1 GTGTTTGGCTACAGG--T-AAAA-AAGCAAACTCTGTTTCTAATTTTTGAAGATTAGGTA 56
Query 61 GAAATCGAAA-AGTGTCTTCAAGTTTCAGAGAGGTCATAAGCTATGGCGGCTGAGAATTC 119
|||| ||||| ||||||||||| |||| ||||||| |||||||||||||| ||||||||
Sbjct 57 GAAAACGAAAGTGTGTCTTCAAGCTTCAAAGAGGTCTTAAGCTATGGCGGCCGAGAATTC 116
Query 120 TTCAAACGCCATTGACGTCGGTACGAGTCTCAATTCCGATTCAAAACCTAACCATGAAGC 179
||||||||| ||| |||||| |||||||||| ||||||||||||||||||||| ||| ||
Sbjct 117 TTCAAACGCTATTAACGTCGATACGAGTCTCGATTCCGATTCAAAACCTAACCGTGACGC 176
Query 180 TAATGATGTGACTAATCATGACTCTTC--C-AAAGCATTGGTAATCCCTTCTCCCGCCGT 236
||||||| ||||| ||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 177 TAATGATATGACTGATCATGACTCTTCTTCTAAAGCATTGGTAATCCCTGCTCCCGCCGT 236
Query 237 TTGTCTCGTACGTTTCGCCGGAGATGCTGCTAGTGGCGCCTTCATGGGCTCTATATTTGG 296
|||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 237 TTGTCTTGTACGTTTCGCCGGAGATGCTGCTAGTGGCGCATTCATGGGCTCTGTATTTGG 296
Query 297 ATATGGTTCTGGATTGTTTAAGAAGAAAGGGTTTAAAGGATCATTTGTGGATGCGGGTCA 356
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTATGGCTCTGGATTGTTTAAGAAGAAAGGGTTTAAAGGATCATTTGTGGATGCGGGTCA 356
Query 357 GTCTGCAAAGACTTTTGCGGTTTTATCTGGAGTACATAGTTTGGTTGTTTGCCTTCTGAA 416
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 357 GTCTGCAAAGACTTTTGCGGTTTTATCTGGAGTACACAGTTTAGTTGTTTGCCTTCTAAA 416
Query 417 GCAAATACGAGGGAAAGATGATGCCATTAATGTTGGAGTTGCTGGATGCTGTACTGGCCT 476
||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 417 ACAAATACGAGGCAAAGATGACGCCATTAATGTTGGAGTTGCTGGGTGTTGTACTGGCCT 476
Query 477 TGCTCTTAGTTTCCCCGGTGCACCGCAAGCAATGCTACAGAGTTGTCTTACTTTTGGTGC 536
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 477 TGCTCTTAGTTTCCCCGGTGCACCGCAAGCAATGCTACAGAGTTGTCTCACTTTTGGTGC 536
Query 537 CTTCTCCTTCATCCTTGAAGGGCTCAACAAAAGGCAAACGGCTTTGGCTCACTCTGTCTC 596
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 537 CTTCTCCTTCATCCTTGAAGGACTCAACAAAAGACAAACGGCTTTGGCTCACTCTGTCTC 596
Query 597 GTTGAGACACCAAACCAGAAGTATCCAACATGATTTACCGCTGCTCTCGTTGGCTCTCCC 656
||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 597 GTTTAGACAACAAACCAGAAGTCCCCAACATGATTTACCGCTGCTCTCGTTGGCTATCCC 656
Query 657 AGTCCATGATGAAATCAAAGGAGCTTTCACTTCTTTCTGCAACTCCTTAACGAAACCCAA 716
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 AATCCATGATGAAATCAAAGGAGCTTTCTCTTCTTTCTGCAACTCCTTAACGAAACCCAA 716
Query 717 GAAGCTCAAATTTCCTCGTGCTCGTTGAtttttttCCTACTTT-T------G--T----- 762
||||||||||||||||| ||||||||||||||||||||||||| | | |
Sbjct 717 GAAGCTCAAATTTCCTCATGCTCGTTGATTTTTTTCCTACTTTATTCTTTTGCCTTTTTG 776
Query 763 -AGATTTTGAAAACAGATTTTGAAAAATGGTTCT-GCTGCATGAGCCAATGAGAAAA 817
|||||||||||||||||| ||||||||||| | | ||||||||||||||||||||
Sbjct 777 TAGATTTTGAAAACAGATT--GAAAAATGGTTTTTGATGCATGAGCCAATGAGAAAA 831
> AT4G26670.1 | Symbols: | Mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein | chr4:13452117-13453984
FORWARD LENGTH=1178
Length=1178
Score = 514 bits (278), Expect = 5e-145
Identities = 536/655 (82%), Gaps = 39/655 (6%)
Strand=Plus/Plus
Query 97 TAAGCTATGGCGGCTG-A-GAATTCTTCAAACGCCATTGACGTCGGTAC--GAGTCTCAA 152
|||||||||||||| | | | |||||||||| || |||||| || | || || |||| |
Sbjct 135 TAAGCTATGGCGGC-GAACG-ATTCTTCAAATGCTATTGACATC-G-ACGGGAATCTCGA 190
Query 153 TTCCGATTCAAAACCTAACCA-TGAAGCTAATGATGTGACTAATCATGACTCTTCCAAAG 211
|||||||| || | ||| || ||| | | | || | ||| || |||| || || || |
Sbjct 191 CTCCGATTCGAATCTTAA-CACTGACGGTGACGAAGCGACCGATAATGATTCCTCGAAGG 249
Query 212 CATTGG-TA--ATCCCTTCTCCCGCCGTTTGTCTCGTACGTTTCGCCGGAGATGCTGCTA 268
|||||| || |||||| |||| ||||||||||| | || ||||||||||||||||||
Sbjct 250 CATTGGTTACTATCCCTGCTCCAGCCGTTTGTCTTTTCCGGTTCGCCGGAGATGCTGCTG 309
Query 269 GTGGCGCC-TTCATGGGCTCTATATTTGGATATGGTTCTGGATTGTTTAAGAAGAAAGGG 327
|||||||| || ||||||||||| || ||||||||||| |||||||| |||||||||||
Sbjct 310 GTGGCGCCGTT-ATGGGCTCTATCTTCGGATATGGTTCAGGATTGTTCAAGAAGAAAGGC 368
Query 328 TTTAAAGGATCATTTGTGGATGC-GGGTCAGTCTGCAAAGACTTTTGCGGTTTTATCTGG 386
|| ||||||||||||| ||||| ||| |||||||| ||||||||||| |||||||||||
Sbjct 369 TTCAAAGGATCATTTGCAGATGCAGGG-CAGTCTGCTAAGACTTTTGCTGTTTTATCTGG 427
Query 387 AGTACATAGTTTGGTTGTTTGCCTTCTGAAGCAAATACGAGGGAAAGATGATGCCATTAA 446
||| || ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 428 AGTCCACAGTTTGGTTGTTTGCCTTCTGAAGCAAATCCGAGGCAAAGATGACGCCATTAA 487
Query 447 TGTTGGAGTTGCTGGATGCTGTACTGGCCTTGCTCTTAGTTTCCCCGGTGCACCGCAAGC 506
||||||||| || || || || ||||| ||||||||||||||||| ||||| || || ||
Sbjct 488 TGTTGGAGTAGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCCCTGGTGCTCCACAGGC 547
Query 507 AATGCTACAGAGTTGTCTTACTTTTGGTGCCTTCTCCTTCATCCTTGAAGGG-CTCAACA 565
| |||||||||||||| || ||||| || ||||| || || ||||| ||| |||||||
Sbjct 548 TCTTCTACAGAGTTGTCTCACGTTTGGGGCATTCTCTTTTATTCTTGA-GGGACTCAACA 606
Query 566 AAAGGCAAACGGCTTTGGCTCACTCTGTCTCGTTGAGACACCAAACCAGAA-GTATCCAA 624
|||| ||||| |||||||| ||||| ||||||||||||||||||||| || || |||||
Sbjct 607 AAAGACAAACAGCTTTGGCACACTCGGTCTCGTTGAGACACCAAACCGGACTGT-TCCAA 665
Query 625 ---CATGAT--T--T--ACCGCTGCTCTCGTTGGCTCTCCC-AGTCCATGATGAAATCAA 674
||| || | | ||| || ||||| ||| ||||||| | ||| ||| ||||||||
Sbjct 666 GATCATCATCGTGCTTTACCACT-CTCTC-TTG-CTCTCCCGA-TCCCTGAAGAAATCAA 721
Query 675 AGGAGC-TTTCACTTCTTTCTGCAACTCCTTAACGAAACCCAAG-AAGCTCAAAT 727
|||||| ||| ||||||||||||| |||||| | ||||| ||| ||| || |||
Sbjct 722 AGGAGCCTTTT-CTTCTTTCTGCAAGTCCTTAGCTAAACC-AAGGAAGTTCTAAT 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39785444424
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5