BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495637
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55530.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 2577 0.0
> AT5G55530.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr5:22493324-22495956 FORWARD LENGTH=1740
Length=1740
Score = 2577 bits (1395), Expect = 0.0
Identities = 1492/1540 (97%), Gaps = 2/1540 (0%)
Strand=Plus/Plus
Query 110 GATTGTTTCTTAGGTTTTGCTATGGACTCCCCACAATCTGTTGTTTCACCATTCAAGATT 169
|||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 202 GATTGTTTGTTAGGTTTTACAATGGACTCCCCACAATCTGTTGTTTCACCATTCAAGATT 261
Query 170 GGTGAGCCAGAAAATGAGAACTCAATTTCTGTGCAGAGCTCTGGAAACCGATCGAATGGC 229
|||||| |||| ||||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct 262 GGTGAGTCAGAGAATGAGAACTCAAATTCTGTGCAGAGTTCTGGAAACCAATCGAATGGC 321
Query 230 ATAAATTCCAATGGGAAAGATTCTAAAAGTTGTGGCCGGCAAGACCTTGTTGGTACTCTT 289
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 322 ATAAATTCCAATGGGAAAGATTCTAAAAGTTGTGGCCGGCAAGACCTTGTTGGTGCTCTT 381
Query 290 GAGGTTTATGTCCATCAGGCAAGGGATATCCATAACATTTGTATATATCACAAGCAAGAC 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GAGGTTTATGTCCATCAGGCAAGGGATATCCATAACATTTGTATATATCACAAGCAAGAC 441
Query 350 GTTTATGCCAAGCTTTGCCTTACAAGTGATCCTGAAAAGTCTGTCTCAACCAAAATCATC 409
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 442 GTTTATGCCAAGCTTTGCCTTACAAGTGATCCTGATAAGTCTGTCTCGACCAAAATCATC 501
Query 410 AATGGTGGTGGGAGGAATCCGGTTTTTGATGACAATGTTAAGCTTGATGTCAGGGTTCTG 469
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 AATGGCGGTGGGAGGAATCCGGTTTTTGATGACAATGTTAAGCTTGATGTCAGGGTTCTG 561
Query 470 GACACTTCCCTCAAATGTGAGATTTACATGATGAGCAGGGTGAAGAATTATCTTGAAGAC 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 562 GACACTTCCCTCAAATGTGAGATTTACATGATGAGCAGGGTGAAGAATTATCTTGAGGAC 621
Query 530 CAGCTGCTTGGTTTTACTCTGGTTCCTATGTCGGAACTGCTCTTCCAGAATGGGAAACTC 589
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 622 CAGCTGCTTGGTTTTACTCTGGTTCCTATGTCGGAACTGCTCTTCAAGAATGGGAAACTC 681
Query 590 GAGAAAGAGTTCTCTCTTTCTTCCACTGATCTGTACCATTCGCCAGCTGGTTTTGTTCAA 649
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 682 GAGAAAGAGTTCTCTCTTTCTTCCACTGATCTCTACCATTCGCCAGCTGGTTTTGTTCAA 741
Query 650 TTGTCACTCTCCTATAATGGATCCTACCCTGAAGTGATGGTTCTTCCCTCTATGCCTTCG 709
||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 742 TTGTCACTCTCCTATTATGGATCCTACCCTGACGTGATGGCTATTCCCTCTATGCCTTCG 801
Query 710 TCTGTTTCTGTTGATGAAACTACCAAGGATCCAGAAGGGTCTGAATCAGTTCCGGGTGAG 769
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 TCTGTTTCTATTGATGAAACTACCAAGGATCCAGAAGGGTCTGAATCAGTTCCGGGTGAG 861
Query 770 TTGGAGAAGATAGAGTTTCCAGATCCTAATGTCGCTAATGAAAATGAGAAGATGGTTTCC 829
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 862 TTGGATAAGATAGAGTTTCCAGATCCTAATGTTGCTAATGAAAATGAGAAGATGGTTTCC 921
Query 830 GAGTATTTTGGGATCTCCTGTTCCACTATTGACTCAGAAACTTCTGACAGCTTGGTTACT 889
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 GAGTATTTTGGGATCTCTTGTTCCACTATTGACTCAGAAACTTCTGACAGCTTGGTTACT 981
Query 890 TCCGATGCTGAGAATCATGTGACCAATTCTGTCACTTCTATACTGAAACAAGATTCACCT 949
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 982 TCCGATGCTGAGAATCATGTGACTAATTCTGTCACTTCTATACTGAAGCAAGATTCACCT 1041
Query 950 GAGAGCAGCAATGCAACAAATGGAGCTGCTTCTCCTCACGCTTCAGCTCACTCCGCTACA 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1042 GAGAGCAGCAATGCAACAAATGGAGCTGCTTCTCCTCACGCTTCAGCTCACTCCGCCACA 1101
Query 1010 GAAACACCAAACTATGAACATCTCTCTGTCGTGAACTCCAAAGCGAGTTCCCAGGAGTCA 1069
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 GAAACACCAAACCATGAACATCTCTCTGTCGTGAACTCCAAAGCGAGTTCCCAGGAGTCA 1161
Query 1070 GGGAGCGAGGCTTCAGGTGAGACATCAGAGGAGAAGATTGTGAAATCCGTCCTCACTGTG 1129
| |||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1162 GAGAGCGAGGCTTCTGGTGAGACATCTGAGGAGAAGACTGTGAAATCCGTCCTCACTGTG 1221
Query 1130 AAGGTTGAGCCAGAGTCAAAGGTGGTGCAGCAGGATATAGTCGACATGTACATGAAAAGC 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 AAGGTTGAGCCAGAGTCAAAGGTGGTGCAGCAGGATATAGTCGACATGTACATGAAAAGC 1281
Query 1190 ATGCAACAGTTTACTGATTCACTGGCTAAGATGAAGCTTCCTCTGGACATTGATAGCCCA 1249
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1282 ATGCAACAGTTTACAGATTCACTGGCTAAGATGAAGCTTCCTCTGGACATTGACAGCCCA 1341
Query 1250 ACAAAATCAGAGAATTCAAGCTCTGATTCTCAGAAGCTGCCAACACCAAAGAACAACAAC 1309
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1342 ACAAAATCAGAAAATTCAAGCTCTGATTCTCAGAAGCTGCCAACACCAAAGAGCAACAAC 1401
Query 1310 GGATCCCGTGTGTTCTATGGGAGCAGGCCTTTCTTCTGAGCATCTGTTTTACCAAGTTCA 1369
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1402 GGATCCCGTGTGTTCTATGGGAGCAGGCCTTTCTTCTGAGCATCTCTTTTACCAAGTTCA 1461
Query 1370 GAGGAAA-AACGCAGGTCACTCTTAGACTTTTCTAATGAAGAAAGACTAATCCTAATGAT 1428
||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1462 GAG-AAAGAACGCAGGTCACCCTTAGACTTTTCTAATGAAGAAAGACTAATCCTAATGAT 1520
Query 1429 GTAATTTTATAATGTACTATTTGATGTTGTATCTCCCATCTGGTCAGCTTGATGCTTTAG 1488
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1521 GTAATTTTATAATGTACTATTTCATGTTGTATCTCCCATCTGGTCAGCTTGATGCTTTAG 1580
Query 1489 TTGATGTGAGTTATTATTATGTATCACTAGCCTTTACTCTATTAGAACTATGTCCGCATT 1548
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1581 TTGATGTGAGTTATTATTACGTATCACTAGCCTTTACTCTATTAGAACTATGTACGCATT 1640
Query 1549 ATATGAATTTCTGCTGCCTAATCATGTTTGTATTTTCTGAGTTACTGATTTTTACATCCA 1608
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1641 ATATGAACTTCTGCTGCCTAATCATGTTTGTATTTTCTGAGTTACTGCGTTTTACATCCA 1700
Query 1609 CAAGAATCTTTAAAACATAGTGATAAATGCTAAGAGTGCT 1648
|||||||||||||| |||||||||||||||| ||| ||||
Sbjct 1701 CAAGAATCTTTAAAGCATAGTGATAAATGCTTAGATTGCT 1740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81425283990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5