BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495641
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2359 0.0
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1014 0.0
> AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502064-22504011 REVERSE LENGTH=1640
Length=1640
Score = 2359 bits (1277), Expect = 0.0
Identities = 1449/1531 (95%), Gaps = 15/1531 (1%)
Strand=Plus/Plus
Query 1 ATTATAGGATGAAC-AAAACATCCTCTG-TT-TCTCTATTCATCTTTTTCTCTACATTTC 57
|||||||||||||| ||||||||||||| || ||||| ||||| |||||||| |||||||
Sbjct 1 ATTATAGGATGAACAAAAACATCCTCTGTTTCTCTCTTTTCATATTTTTCTCCACATTTC 60
Query 58 CTCATCTGGGTCATCTCCAAAAATGATTTGAAGATCACCCAAATTCGCAATTTGATTAGG 117
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 61 CTCATCTGGGTCATCTCCAAAAATGATTTGATGATAACCCAAATTCGCAATTTGATTAGG 120
Query 118 acaacaacaacaacaacTTTATTTATCTGATTCCGTCTTAGATTTTCAGACAACAAAAAG 177
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 121 ---ACAACAACAACAACTTTATTTATCTGATTCCGTCTTTGATTTTCAGACAAGAAAAAA 177
Query 178 AAGAAGAAGATGGAATCGGATCTGGGGAAGCTCTTCATTGGTGGGATTTCGTGGGATACA 237
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AAAAAAAAGATGGAATCGGATCTGGGGAAGCTCTTCATTGGTGGGATTTCGTGGGATACA 237
Query 238 GATGAAGAAAGGTTAAGAGACTATTTTAGCAACTATGGTGATGTTGTTGAAGCTGTGATC 297
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 238 GACGAAGAAAGGTTAAGAGACTACTTTAGCAACTATGGTGATGTTGTTGAAGCTGTGATC 297
Query 298 ATGAGAGATCGTGCCACAGGACGTGCACGTGGCTTCGGCTTCATTGTCTTTGCAGATCCT 357
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 298 ATGAGAGATCGTGCCACAGGTCGTGCACGTGGCTTCGGCTTCATTGTCTTTGCAGACCCC 357
Query 358 TGTGTCTCAGAGAGAGTGATCATGGAGAAACACATCATCGATGGCCGCACGGTTGAGGCC 417
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 358 TGTGTCTCAGAGAGAGTGATCATGGATAAACACATCATCGATGGCCGCACGGTTGAGGCG 417
Query 418 AAGAAGGCCGTGCCTCGAGATGATCAGCAGGTGCTAAAACGACACGCTAGTCCTATCCAA 477
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 418 AAGAAGGCTGTGCCTCGAGATGATCAGCAGGTGCTAAAGCGACACGCTAGTCCTATCCAC 477
Query 478 CTTATCTCACCTGTCCATGGCGGTGGCGGTGGAAGGACAAAGAAGATCTTTGTTGGAGGT 537
||||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 478 CTTATGTCACCTGTCCAT---GGTGGTGGTGGAAGGACAAAGAAGATCTTCGTTGGAGGT 534
Query 538 TTACCGTCTAGCATTACCGAGGAAGAGTTCAAGAACTACTTTGATCAGTTTGGTACAATT 597
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 535 TTACCGTCTAGCATTACCGAGGAGGAGTTCAAGAACTACTTTGATCAGTTTGGTACTATT 594
Query 598 GCTGATGTTGTGGTAATGTATGATCATAACACGCAGAGGCCAAGAGGTTTTGGCTTCATC 657
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GCTGATGTTGTTGTAATGTATGATCATAACACGCAGAGGCCAAGAGGTTTTGGCTTCATC 654
Query 658 ACATTTGATTCAGATGATGCTGTTGATAGGGTTCTTCACAAGACCTTTCATGAGCTCAAT 717
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 655 ACATTTGATTCAGATGATGCTGTTGATAGAGTTCTTCACAAGACCTTCCATGAGCTCAAT 714
Query 718 GGGAAACTAGTCGAGGTCAAAAGAGCTGTACCTAAGGAGACTTCCCCTGTTTCTAATAAC 777
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 715 GGGAAACTAGTTGAGGTCAAAAGAGCTGTACCTAAGGAGATTTCCCCTGTTTCTAATATC 774
Query 778 CGAAGCCCGCTTCCTGGCGGTCTTAACTATGGAGGCGGGTCTAATAGGATTTCTGCTAAT 837
|||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 775 CGAAGCCCGCTTGCTAGCGGTGTTAACTATGGAGGCGGGTCTAATAGGATGCCTGCTAAT 834
Query 838 AGCTACTTTAATAACTTTGCTCCTGGTCCTGGTTTTTATAACAATCTAGGCCCTGTTGGT 897
||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 835 AGCTACTTTAACAACTTTGCTCCTGGTCCTGGTTTTTATAACAGTCTAGGTCCTGTTGGT 894
Query 898 GGTCGGTTTAGTCCTATTATTGGTAGTGGTAGAAATGCGGTTTCTGCTTTCGGCCTCGGT 957
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 895 CGTCGGTTTAGTCCTGTTATTGGTAGTGGTAGAAATGCGGTTTCTGCTTTTGGCCTCGGT 954
Query 958 TTGAATCATGAGTTGAGTTTGAATTTGAATCCAAGCTATGATGGGACAAGCTCTACATTT 1017
||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 955 TTGAATCATGACTTGAGTTTGAATTTGAATCCAAGCTGCGATGGGACAAGTTCTACGTTT 1014
Query 1018 GGGTATAACCGTATTCCAAGCAACCCTTACTTCAACGGTGCTTCCCTGAACCGTTACACC 1077
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1015 GGTTATAACCGTATTCCAAGCAACCCTTACTTCAACGGTGCTTCCCCGAACCGTTACACC 1074
Query 1078 TCTCCAATCGGGCACAATAGAACTGAGTCTCCTTACATTTCGAACAATAGAGACTTATGG 1137
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1075 TCTCCAATCGGGCACAATAGAACTGAGTCTCCTTACAATTCGAACAATAGAGACTTATGG 1134
Query 1138 GGAAACAGAACCGAGACTGCAGGTCCCGGTTGGAACTTGAATGTCTCGAATGAAAACAAC 1197
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1135 GGAAACAGAACCGACACTGCAGGTCCCGGTTGGAACTTGAATGTCTCGAATGGAAACAAC 1194
Query 1198 AGAGGAAATTGGGGACTTCCTTCTTCT---GCTGTTGGTAATGATAACAATGGCCATGGA 1254
||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 1195 AGAGGAAATTGGGGACTTCCTTCTTCTTCTGCTGTTAGTAATGATAACAATGGCTTTGGA 1254
Query 1255 AGAAACTATAGGACAAGTTCTGGACTTTCCTCGTCCCCATTTAACGGTTTTGAAGGTTCT 1314
|| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1255 AGGAACTATGGGACAAGTTCTGGACTTTCCTCGTCCCCATTTAATGGTTTTGAAGGTTCT 1314
Query 1315 ATAGGGGAATTGTACAGAGGCAGCTCAGTTTACAGCGACTCAACGTGGCAGCAACAACAG 1374
||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct 1315 ATAGGGGAACTGTACAGAGGCGGCTCAGTCTACAGCGACTCAACGTGGCAGCAACA---G 1371
Query 1375 CAGCTAGCGTCTCAGTCTTCTCACGAGCTAGACAATTTGTCTCGCTCTTACGGTTATGAT 1434
|||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1372 CAGCTACCATCTCAGTCTTCTCACGAGCTAGACAATTTGTCTCGCGCTTACGGTTATGAT 1431
Query 1435 ATTGACAATGTAGGTTCAGACCCATCTGCAAATGACTCAGAAGGTTACAATGGAAGCTAC 1494
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1432 ATTGACAATGTAGGTTCAGACCCATCTGCAAATGACCCAGAAACTTACAATGGAAGCTAC 1491
Query 1495 AATGTTGGAAATAGACAAACTAATAGAGGTA 1525
|||||||||||||||||||||||||||||||
Sbjct 1492 AATGTTGGAAATAGACAAACTAATAGAGGTA 1522
> AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13444850-13448212 FORWARD LENGTH=2509
Length=2509
Score = 1014 bits (549), Expect = 0.0
Identities = 1218/1524 (80%), Gaps = 114/1524 (7%)
Strand=Plus/Plus
Query 192 ATCGGATCTGGGGAAGCTCTTCATTGGTGGGATTTCGTGGGATACAGATGAAGAAAG-GT 250
|||||||||||| |||||||||||||| |||||||| ||||| |||||||||||| | |
Sbjct 554 ATCGGATCTGGGCAAGCTCTTCATTGGCGGGATTTCATGGGACACAGATGAAGAACGACT 613
Query 251 -TAAGAGACTATTTTAGCAACTATGGTGATGTT-GTTGAAGCTGTGATCATGAGAGATCG 308
||||| |||||| |||| ||||| ||| || ||||||||||||||||||||||| ||
Sbjct 614 GCAAGAG--TATTTTGGCAAGTATGGAGAT-TTGGTTGAAGCTGTGATCATGAGAGACCG 670
Query 309 TGCCACAGGACGTGCACGTGGCTTCGGCTTCATTGTCTTTGCAGATCCTTGTGTCT-CAG 367
| | || |||||||| |||||||| || || || || ||||||||||||| ||| | | |
Sbjct 671 TACTACCGGACGTGCCCGTGGCTTTGGGTTTATCGTTTTTGCAGATCCTTCTGT-TGCCG 729
Query 368 AGAGAGTGATCATGGAGAAACACATCATCGATGGCCGCACGGTTGAGGCCAAGAAGGCCG 427
||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||| || |
Sbjct 730 AGAGAGTCATCATGGACAAACACATCATTGATGGCCGCACGGTCGAGGCGAAGAAAGCTG 789
Query 428 TGCCTCGAGATGATCAGCAGGTGCTAAAACGACACGCTAGTCCTATCCAACTTATCTCAC 487
| || || ||||||||||| ||||||||||||||||| ||||| || || ||||||||||
Sbjct 790 TCCCGCGGGATGATCAGCAAGTGCTAAAACGACACGCCAGTCCAATGCACCTTATCTCAC 849
Query 488 CT-GTCCATGGCGG---TGGCGGTGGA--A-GGACAAAGAAGATCTTTGTTGGAGGTTTA 540
|| | |||||| || ||| |||||| | |||||||||||||||||||||||||||||
Sbjct 850 CTAG-CCATGGTGGTAATGGTGGTGGAGCACGGACAAAGAAGATCTTTGTTGGAGGTTTA 908
Query 541 CCGTCTAGCATTACCGAGGAAGAGTTCAAGAACTACTTTGATCAGTTTGGTACAATTGCT 600
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 909 CCGTCTAGCATTACTGAGGCCGAGTTCAAGAACTACTTTGATCAGTTTGGTACAATTGCT 968
Query 601 GATGTTGTGGTAATGTATGATCATAACACGCAGAGGCCAAGAGGTTTTGGCTTCATCACA 660
|||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 969 GATGTTGTGGTAATGTATGATCATAATACACAGAGGCCAAGAGGCTTTGGCTTCATCACT 1028
Query 661 TTTGATTCAGATGA-TGCTGTTGATAGGGTTCTTCACAAGACCTTTCATGAGCTCAATGG 719
|||||||| || || | ||||||||| |||||| |||||||||||||||||||| || ||
Sbjct 1029 TTTGATTCCGAAGAGT-CTGTTGATATGGTTCTCCACAAGACCTTTCATGAGCTAAACGG 1087
Query 720 GAAACTAGTCGAGGTCAAAAGAGCTGTACCTAAGGAGACT-TCCCCTGTTT-CTAATAAC 777
||| | || ||||| |||||||| || || |||||| || ||| | | | || ||||
Sbjct 1088 AAAAATGGTTGAGGTTAAAAGAGCAGTGCCAAAGGAG-CTCTCCTC-GACTACTCCTAAC 1145
Query 778 CGAAGCCCGCTTCCTGGC---GGTCTTAACTATGGAGGCGGGTCTAATAGGAT-TTCTGC 833
|||||||| ||| ||| ||| |||||||||| | |||||||| | ||||||
Sbjct 1146 CGAAGCCCACTTATTGGGTATGGTAACAACTATGGAGTAGTCCCTAATAGG-TCTTCTGC 1204
Query 834 TAATAGCTACTTTAATAACTTTGCTCCTGGTCCTGGTTTTTATAACAATCTAGGCCCTGT 893
|||||||||||| |||| ||| |||||||| | | | |||| ||||||||| |||
Sbjct 1205 TAATAGCTACTTCAATAGTTTTCCTCCTGGT--TA-TAATAATAATAATCTAGGCTCTGC 1261
Query 894 TGGTGGTCGGTTTAGTCCTATTATTGGTAGTGGTAGAAATGCGGTT-TCT-GCTTTCGGC 951
||| ||||||||||||||| ||||| ||||||||||| || ||| |||| |||
Sbjct 1262 TGGC---CGGTTTAGTCCTATT---GGTAGCGGTAGAAATGCT-TTCTCTAGCTT-CGGG 1313
Query 952 CTCGGTTTGAATCATGAGTTGAGTTTGAATTTGAATCCAAGCTATGATGGGACAAGCTCT 1011
||||| |||||||| || | | |||||||||| ||| || |||||| | || | ||
Sbjct 1314 CTCGGATTGAATCAAGA----ACT--GAATTTGAATTCAAACTTTGATGG-A-AA-CACT 1364
Query 1012 ACATTTGGGTATAACCGTATTCCAAGCAACCCTTACTTCAACGGTGCTTC-CCTGAACCG 1070
| || ||||||| ||| || || |||||| ||||||||| ||||||| || |||||
Sbjct 1365 -C-TT-GGGTATAGCCGGATCCCTGGCAACCAATACTTCAACAGTGCTTCACCA-AACCG 1420
Query 1071 TTACACCTCTCCAATCGGGCACAATAGAACTGAGTCTCCTTACATTTCGAACAATAGAGA 1130
||||| ||||||||| ||| |||| ||| || ||| |||||| ||| ||| |||||
Sbjct 1421 TTACAACTCTCCAATTGGGTACAACAGAGGAGACTCTGCTTACAACCCGAGCAACAGAGA 1480
Query 1131 CTTATGGGGAAACAGAACCGAGAC-TGCAGGTCCCGGTTGGAACTTGA-ATGTCTCGAAT 1188
||| ||||||||||||| ||| | | | ||||| |||||||||||| | || ||| |
Sbjct 1481 CTTGTGGGGAAACAGAAGCGATTCCT-CTGGTCCAGGTTGGAACTTGGGA-GTTTCGGTT 1538
Query 1189 GAAAACAACAGAGGAAATTGGGGACTTCCTTCTTCTGCTGTTGGTAATGATAACAATGGC 1248
| |||||||||||||| ||||||||| | |||||| || || | ||||||||||||
Sbjct 1539 GGTAACAACAGAGGAAACTGGGGACTT--T-CTTCTG-TGGTG--AGCGATAACAATGGC 1592
Query 1249 CATGGAAGAAACTATAGGACAAGTTCTGGACTTTCCTCGTCCCCATT------TAA--C- 1299
||||||||| |||| || | ||||||||||||| || |||| ||| |
Sbjct 1593 TATGGAAGAAGCTATGGGGCTGGTTCTGGACTTTCGGGGTTATCATTCGCGGGTAATACA 1652
Query 1300 ---GGTTTTGAAGGTTCTATAGGGGAATTGTACAGAGGCAGCTCAGTTTACAGCGACTCA 1356
|||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1653 AACGGTTTTGATGGCTCTATAGGGGAATTGTATAGAGGCAGCTCAGTTTATAGCGACTCA 1712
Query 1357 ACGTGGCAGCAA-CAACAGCAGCTAGCGTC-TCAGTCTTCTCACGAGCTAGACAATTTGT 1414
|| |||||||| ||| || || | || |||||||||| | ||| ||||| ||||
Sbjct 1713 ACATGGCAGCAGTCAAT-GC--CT--CATCATCAGTCTTCTAATGAGTTAGACGGCTTGT 1767
Query 1415 CTCGCTCTTACGG-TTATGATATTGACAATGTAGGTTCAGACCCATCTGCAAATGACTCA 1473
|||||||||| || || || ||||||||||||||| ||||||||||| || |||| ||||
Sbjct 1768 CTCGCTCTTATGGCTT-TGGTATTGACAATGTAGGCTCAGACCCATCAGCCAATGCCTCA 1826
Query 1474 GAAGGTTACAATGGAAGCTACAATGTTGGAAATAGACAAACTA-ATAGAGGTATTGCGGC 1532
||||| ||| |||| ||||||||| |||||||||||||| | |||||||||||| ||
Sbjct 1827 GAAGGATACTCCGGAAACTACAATGTCGGAAATAGACAAAC-ACATAGAGGTATTGAAGC 1885
Query 1533 ATAGGTTATCaa-aaaccaagaaaacaaaaaaaaaGTTGAGAGATTTGTAGATTGA-AAG 1590
|||| | || ||| | || | || | || || |||| ||| |||||| | |||
Sbjct 1886 ATAG---A--AAGAAATC--GA---CGAAGAGAA-GT-GAGA-ATT-GTAGATCAAGAAG 1931
Query 1591 CA-A-CCAATTTCAGTTGCAGAGTTTGAAGAG--GTT-TT-CT-TCTCA--T-GACAAAG 1640
| | ||| |||| |||||||||||||||||| ||| || | | ||| | || ||||
Sbjct 1932 AACAGCCA-TTTCCGTTGCAGAGTTTGAAGAGTTGTTATTTCGATATCAAGTAGAGAAAG 1990
Query 1641 ACACCAACTTTGTTGATCACAGTG 1664
| ||||||||| || |||||||||
Sbjct 1991 AAACCAACTTTCTTCATCACAGTG 2014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101103897630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5