BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495644
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55560.1 | Symbols: | Protein kinase superfamily protein | ... 1722 0.0
> AT5G55560.1 | Symbols: | Protein kinase superfamily protein
| chr5:22506302-22507879 REVERSE LENGTH=1242
Length=1242
Score = 1722 bits (932), Expect = 0.0
Identities = 1092/1167 (94%), Gaps = 19/1167 (2%)
Strand=Plus/Plus
Query 1 CCGTTTCTTTGGTCTTCAAAAGCTTTCCCT-AATCTAACACGCTCCGTTACG-TTTTCTC 58
||| |||||||||||| |||| |||||||| |||||| |||||||||||||| |||||||
Sbjct 1 CCGCTTCTTTGGTCTTTAAAACCTTTCCCTAAATCTATCACGCTCCGTTACGTTTTTCTC 60
Query 59 CTTTACGAAAAGCTCAGCAAA-AA-CAGCTTTAAAGCGAT--TTAAATGGT-ATGTGTTC 113
||||||||||| ||||||||| || | ||| | | | || | | | |
Sbjct 61 CTTTACGAAAATCTCAGCAAAGAATTTTCGATAATTCTCTCCTCCGAT--TCAAGCG--A 116
Query 114 TTTCTTCAA-GATGACTTGTGCGAGCTCCGATGACAATGACAGTGAAAAGGACAAGGACT 172
||| || || |||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 117 TTT-TT-AATGATGACTTGTGCGAGCTCCGATGATAATGAGAGTGAAAAGGACAAGGACT 174
Query 173 CGGAGTCTTTCGTGGAGGTCGACCCGACTGGTAGATACGGTCGGTACGGCGAACTTCTTG 232
||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 175 CGGAGTCCTTCGTGGAGGTAGATCCGACAGGTAGATACGGTCGGTACGGCGAACTTCTTG 234
Query 233 GCTCAGGCGCCGTCAAGAAAGTCTACAGAGCCTTTGACCAAGAAGAAGGCATCGAGGTGG 292
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GCTCAGGCGCCGTAAAAAAAGTCTACAGAGCCTTTGACCAAGAAGAAGGCATCGAGGTGG 294
Query 293 CTTGGAACCAAGTTAAACTGAGATGTTTTTCCGACGATCCAGCCATGACAGAGAGGCTTT 352
||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 295 CTTGGAACCAAGTCAAACTGAGATGTTTTTCGGATGATCCAGCCATGACCGAGAGGCTTT 354
Query 353 ACTCGGAGGTCAGGTTGCTTAAGAACCTTAAGAACAGTAACATCATCACCCTCTATAAAG 412
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 355 ACTCGGAGGTCAGGTTGCTTAAGAACCTTAAGAACAGTAACATCATCACCCTGTATAAAG 414
Query 413 TGTGGAGAGACGAGAGAAACAACACCTTGAACTTCATCACCGAGATCTGTACCTCCGGGA 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 415 TGTGGAGAGACGAGAGAAACAACACCTTGAACTTCATCACCGAGATCTGTACCTCCGGAA 474
Query 473 ACCTCAGAGAGTACCGGAAGAAGCACAGACACGTCTCTATGAGGGCTTTGAAGAAGTGGT 532
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 ACCTGAGAGAGTACCGGAAGAAGCACAGACACGTCTCTATGAGGGCTTTGAAGAAGTGGT 534
Query 533 CCAAACAGATTCTCAAAGGCTTGGACTATCTCCACACTCACGAGCCTTGCATCATCCACA 592
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 535 CCAAACAGATTCTCAAGGGCTTGGATTATCTCCACACTCACGACCCTTGCATCATCCACA 594
Query 593 GAGACCTCAACTGTAGCAATATCTTCGTCAATGGCAACATCGGCCAGGTCAAGATTGGTG 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GAGACCTCAACTGTAGCAATATCTTCGTCAATGGCAACATCGGCCAGGTCAAGATTGGTG 654
Query 653 ATCTAGGTTTAGCTGCAATTGTGGGGAAGAACCATTTAGCTCACTCCATCCTCGGGACAC 712
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 655 ATCTAGGTTTAGCTGCAATTGTGGGGAAGAACCATTTAGCTCACTCGATCCTCGGGACAC 714
Query 713 CAGAGTTCATGGCTCCTGAGCTATACGAGGAGAACTACACTGAGATGGTTGACATTTACT 772
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 715 CAGAGTTCATGGCTCCTGAGCTGTACGAGGAGAACTACACTGAGATGGTTGACATATACT 774
Query 773 CGTATGGAATGTGCGTTTTGGAGCTTGTCG-CACTCGAGATTCCTTATAGCGAATGTGAT 831
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 775 CGTATGGAATGTGCGTTTTGGAGCTTGT-GTCACTCGAGATTCCTTATAGCGAATGTGAC 833
Query 832 AGCGTCGCCAAAATATACAAAAGGGTGAGCAATGGCCTCAAACCAGAGGCTCTCAACAAA 891
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 834 AGCGTCGCCAAAATATACAAAAGGGTGAGCAAAGGCCTCAAACCAGAGGCTCTCAACAAA 893
Query 892 GTAAATGATCCTGAAGCTAAGGCATTTATTGAAAAATGCATCGCACAGCCGACAGCTAGA 951
|| |||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 894 GTTAATGATCCAGAAGCTAAGGCATTTATTGAAAAATGCATCGCGCAGCCGAGAGCTAGA 953
Query 952 CCTTCTGCAGCTGAGCTCCTCTGCGACCCGTTCTTTGATGGGATATTAGATGATGATGAC 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CCTTCTGCAGCTGAGCTCCTCTGCGACCCGTTCTTTGATGGGATATTAGATGATGATGAC 1013
Query 1012 GAAGACGGCGAAAACAATGACAACAGTGGAGCTTGTCGTATTGTT-T--CTTGATGATTG 1068
|||||||| |||||||||||||||| ||||||| ||||||||||| | |||||||| ||
Sbjct 1014 GAAGACGGTGAAAACAATGACAACAATGGAGCTGGTCGTATTGTTGTTTCTTGATGAGTG 1073
Query 1069 TATACAATGACCCTTTGTTAATTAGATATTTGGTTATCAAATGCACGCTCCATTTCTTCC 1128
|||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1074 TATACAATGAACCTTGGTTAATTAGATGTTTGGTTATCAACTGCACGCTCCATTTCTTCC 1133
Query 1129 AAGCCTGCAGTTGTTAGTAAAATTTAT 1155
|||||||||||||||||||||| ||||
Sbjct 1134 AAGCCTGCAGTTGTTAGTAAAAGTTAT 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5