BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495645
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55580.1 | Symbols: | Mitochondrial transcription terminati... 2915 0.0
> AT5G55580.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr5:22515440-22517929 FORWARD
LENGTH=2173
Length=2173
Score = 2915 bits (1578), Expect = 0.0
Identities = 1862/1992 (93%), Gaps = 48/1992 (2%)
Strand=Plus/Plus
Query 1 tttttttttttttttttttGGAATTAGGGTTTTAGGGTATATTCGCAATCGGTCTAATTG 60
|||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 51 TTTTTTGTTTGTTTGTTTTGGAATTAGGGTTTTAGGGTATATTCGCAATCACTCTAATCG 110
Query 61 GATAATTCTTCTACTCTGTTAACATTATCTTCTTTTTCGTTCCTACCGCAAATGGCGGGT 120
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 111 GATAATTCCTCTACTCTGTTAACATTATCTTCTTCTTCGTTCCTACCGCAAATGGCGGGT 170
Query 121 TTCTCACTGTACTGTTTTATAAACCCACGAATTCTCTTTACTCTTCCGTCGGAATCACCT 180
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 171 TTCTCACTGTACTGTTTTAAAAACCCTCGAATTCTCTTTACTCTTCCGTCGGAATCACCT 230
Query 181 CTCTTTGTTTTGGGTTCTGATAAATTTTCGCCGGCGACGAGACGG-CGAAGTAGAAAGAC 239
||||||||||||||||||||||||| ||| ||||||||||||||| || |||||||||||
Sbjct 231 CTCTTTGTTTTGGGTTCTGATAAATGTTCACCGGCGACGAGACGGCCG-AGTAGAAAGAC 289
Query 240 TCGTGGGTTCGTCGTAACGTACGCGCACTCTAACCCGAAGATTATCAATCCGAAGAAGAA 299
||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 290 TCGTGGGTTTGTCGTGACGTACGCGCACTCTAATCCGAAGATAATCAATCCGAAGAAGAA 349
Query 300 GTCGAGGTATGGGCAAACGTTATCTCCATatgacagtgatgaagatgaaga-gct-a-ga 356
|||||||||||||||||||||||||||||||||||||||||||||||| || | | | ||
Sbjct 350 GTCGAGGTATGGGCAAACGTTATCTCCATATGACAGTGATGAAGATGATGATGATGATGA 409
Query 357 tgatgatgaagatgatgactggttgcttaatgatgaCTTCGCTGAGGTTACAGAGTATGA 416
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 410 TGATGATGATGATGATGACTGGTTACTTAATGATGATTTCGCTGAGGTTACAGAGTATGA 469
Query 417 GAAGAAGAAGCCTAAGTCACAGAAGCAAACCATTGCTAAGAAAGGTGTGAAGAAAGGGAT 476
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 470 GAAGAAGAAGCCTAAGTCACATAAGCAAACCATTGCTAAGAAAAGTGTGAAGAAAGGGAT 529
Query 477 CGTCAAAAATTGGGAAAAACATGAAGAAAGTGAGACTGATGAAGATGATCTTGATATAGG 536
||| || | | |||||||||||||||||||||||||||||||||| ||||
Sbjct 530 TGTC---AA----G-----CCTGAAGAAAGTGAGACTGATGAAGATGATCTTGATTTAGG 577
Query 537 C----GT--T-A-G-----TC-GA-AA-TAG--GGAGTCTTGGCGTTTAGATGGTCGAGG 578
| || | | | || || || || |||||||||||||||||||||||||||
Sbjct 578 CATTAGTCCTAATGCCACTTCTGAGAAGAAGAAGGAGTCTTGGCGTTTAGATGGTCGAGG 637
Query 579 AAAGGTGAGTTTGAGGAAATATGTCGAGAAACTATACCCTCGGCTCTCAGAAGAGATCGA 638
|||| |||||| |||||| ||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 638 AAAGATGAGTTCGAGGAAGTATGTGGAGAAACTATACCCTCGGCTCGCAGAAGAGATTGA 697
Query 639 TATAGATCCGAAATGGGTACCACTTCTCGATTACTTGAGCACATTTGGTCTGAAAGAATC 698
||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||| ||
Sbjct 698 TATAGATCCGAAATGTGTACCACTTCTGGATTACTTAAGCACATTTGGTTTGAAAGAGTC 757
Query 699 ACACTTTGTTCAAATGTACGAGAGACACATGCCATCCCTTCAGATTAATGTCTTATCAGC 758
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 758 ACACTTTGTTCAAATGTACGAGAGACACATGCCATCCCTTCAGATTAATGTGTTCTCAGC 817
Query 759 GCAAGAGAGACTCGATTACTTGTTGAGTGTCGGTGTTAAACACAGAGATATCAAGAGAAT 818
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 TCAAGAGAGACTCGATTACTTGTTGAGTGTCGGTGTTAAACACAGAGATATCAAGAGAAT 877
Query 819 GCTCTTGAGACAACCACAGATACTTCAATACACAGTTGAGAACAATCTCAAAGCTCACAT 878
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 878 GCTCTTGAGACAACCACAGATACTTCAATACACTGTTGAGAACAATCTCAAAGCTCACAT 937
Query 879 TTCCTTTCTAATGGGTCTTGGGATTCCTAATTCCAAAATAGGACAGATAGTTGCTGCTAC 938
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 938 TTCCTTTCTAATGGGTCTTGGCATTCCTAATTCCAAAATAGGACAGATTGTTGCTGCTAC 997
Query 939 CCCGTCTCTGTTCTCTTACAGTGTAGAGAATTCACTGAGACCCACGATAAGGTATCTGAT 998
||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 998 CCCTTCTCTCTTCTCTTACAGTGTAGAGAATTCATTGAGACCTACGATAAGGTATCTGAT 1057
Query 999 CGAAGAGGTTGGGATAAAGGAAACCGATGTTGGAAAGGTTGTGCAACTTAGCCCTCAGAT 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 CGAAGAGGTTGGGATAAAGGAAACCGATGTTGGAAAGGTTGTGCAACTTAGCCCTCAGAT 1117
Query 1059 TCTGGTTCAGCGGCTCGACATAACATGGAACACCCGGTACATGTTCCTCTCCAAGGAGTT 1118
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1118 TCTGGTTCAGCGGCTCGACATAACATGGAACACTCGCTACATGTTCCTCTCCAAGGAGTT 1177
Query 1119 GGGAGCACCTAGAGACAGCGTAGTGAAGATGGTGAAGAAACATCCGCAGCTTCTTCACTA 1178
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1178 AGGAGCACCTAGAGACAGCGTAGTGAAGATGGTAAAGAAGCATCCGCAGCTTCTTCACTA 1237
Query 1179 CAGTATCGATGACGGGTTCTTGCCTCGAATCAATTTCCTTAGGAGCATTGGGATGTGCAA 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 CAGTATCGATGACGGGTTCTTGCCTCGAATCAATTTCCTTAGGAGCATTGGGATGTGCAA 1297
Query 1239 TTCTGATATACTGAAAGTCTTGACTAGCCTTACACAGGTTTTGTCTCTTTCGCTAGAAGA 1298
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1298 TTCTGATATACTGAAAGTCTTGACTAGCCTTACACAGGTTTTGTCTCTTTCACTAGAAGA 1357
Query 1299 TAATCTAAAGCCTAAGTACATGTATTTGGTCAATGAGCTCAATAATGAAGTGCACATTTT 1358
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1358 TAATCTAAAACCTAAGTACATGTATTTGGTCAATGAGCTCAATAATGAAGTTCACATTCT 1417
Query 1359 GACCAAATACCCAATGTACTTGAGCTTGTCCTTGGATCAAAGGATACGCCCGCGCCACCG 1418
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1418 GACCAAATACCCAATGTACTTGAGCTTGTCCTTGGATCAAAGGATACGTCCGCGCCACCG 1477
Query 1419 CTTCCTGGTTGAGTTAAAGAAAGTGCGGAAAGGGCCGTTCCCTCTTAGTTCATTAGTTCC 1478
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1478 CTTCTTGGTTGAGTTAAAGAAAGTGCGGAAAGGGCCATTCCCTCTTAGTTCATTAGTTCC 1537
Query 1479 AAATGATGAAAGCTTTTGTCAGCAATGGGCAGGAACCAGTGTAGATACGTATCTCGCCTT 1538
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1538 AAATGATGAAAGCTTTTGTCAGCAATGGGCTGGAACCAGTGTAGATACGTATCTCGCCTT 1597
Query 1539 TCGCCAGAGGCTGTTACTCAAGGAGTTTGCAAACAAGTATGACAAGAGAGTATGATGATG 1598
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1598 TCGCCAGAGGCTGTTACTCAAGGAGTTTGCAAACAAGTATGACAAGAGAGGATGATGATG 1657
Query 1599 GAAATCTCTTGCT-CTTGATTACCGACTACAAGTCAACACTTTGGTTACTTTTCTTGCTT 1657
| |||||||| || ||||||||||||| | |||||||||||||||||| ||| || ||||
Sbjct 1658 GGAATCTCTT-CTTCTTGATTACCGACAATAAGTCAACACTTTGGTTAGTTTCCT-GCTT 1715
Query 1658 CAAATCCGGTAAAAGAGGTTCATAAGCAGAACCTGTGAATGAC-CATTAACTTCTGGTGA 1716
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1716 CAAATCCGGTAAAAGAGGTTCATATGCAGAACCTGTGAATGACTCATTAACTTCTGGTGA 1775
Query 1717 AACGCGA--TACTGCAAAGATTAAAAACTTTTTCAGGACAAGAAAATCCAGAGAAGCCGG 1774
||||||| ||||||||||||| || ||||||||||| ||| || ||||||||||||||
Sbjct 1776 AACGCGAGATACTGCAAAGATTGAA--CTTTTTCAGGA-AAGTAACTCCAGAGAAGCCGG 1832
Query 1775 CTTGGCACAGACATCATATTTGTTTTACCAGATGAGAGTTTCCACAATCTTTTCCGGGTT 1834
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1833 CTTGGCACAGACATCATATTTGTTT-ACCAGATGAGAGTTTCCTCAATCTTTTCCAGGTT 1891
Query 1835 TTGGCTACATTTCAAGTTCTGCAATGT-TATGTGGTAAAGGTTTACTCTCTTTTTCTCCT 1893
||| |||||||| ||||||||| |||| | |||||||||| |||||||||||||||||||
Sbjct 1892 TTGTCTACATTTTAAGTTCTGCTATGTCT-TGTGGTAAAGTTTTACTCTCTTTTTCTCCT 1950
Query 1894 CTTCTTTCTAATGAATCACGAAGAAGAGAAACACAATCTGTGTGTAGTATTTTTTGGCCT 1953
|||||||||||||||||| | |||||||||| | |||| ||||||||||||||||||||
Sbjct 1951 CTTCTTTCTAATGAATCATGGAGAAGAGAAA-AGAATCCATGTGTAGTATTTTTTGGCCT 2009
Query 1954 AGTATATATATA 1965
||||||||||||
Sbjct 2010 AGTATATATATA 2021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97338856755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5