BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495646
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55590.1 | Symbols: QRT1 | Pectin lyase-like superfamily pro... 1862 0.0
> AT5G55590.1 | Symbols: QRT1 | Pectin lyase-like superfamily protein
| chr5:22519911-22521858 FORWARD LENGTH=1302
Length=1302
Score = 1862 bits (1008), Expect = 0.0
Identities = 1197/1281 (93%), Gaps = 41/1281 (3%)
Strand=Plus/Plus
Query 1 ATGAAAGTCGAAGCTTTTATTCCCGCCGTTTTATTGCTCTGTTTT---G----G--ATGT 51
||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 1 ATGAAAGTCGAAGCTTTTATTCCCGCCGTTTTATTGCTCTGTTTTGGGGTAATGTTATGT 60
Query 52 TTAAAAAGCTCGTGTGCGTTGCAGATAGGT---AATAATGATTTGAAGAATTACATAAGC 108
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 61 TTAAAAAGCTCGTGTGCGTTGCAGATAGGTAACAATAATGAGTTGAAGAATTACATAAGT 120
Query 109 TGGGAAGATCTGAGAGTTGTGGAAGATGGAAGAACAGAGAGAAGTTTTAGTATTAAGGAG 168
||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 121 TGGGAAGATTTGAGAGTTGTGGAAGATGGAAGAATAGAGAGAAGTTTTAGCATTAAGGAG 180
Query 169 AATAGTAATTGGGTAACCACAAATGCAAACTCAAAAGCAAACGCGAACGCTACAAACGTG 228
||||||||||||||||||||||| | || || || |||||||||||||| ||||||
Sbjct 181 AATAGTAATTGGGTAACCACAAA--C--GCT--AACGCTAACGCGAACGCTACTAACGTG 234
Query 229 AGCAGAGTGATTGTGGTTGATAAAAACGGAGGAGGAGACTCTGTTACAGTTCAAGGAGCT 288
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 235 AGAAGAGTGATTGTGGTTGATAAAAACGGAGGAGGAGATTCTGTTACAGTTCAAGGAGCT 294
Query 289 GTTGATATGGTTCCTGATTCCAATTCACAGAGAGTTAAAATCTTCATTCTTCCTGGGATT 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GTTGATATGGTTCCTGATTCCAATTCACAGAGAGTTAAAATCTTCATTCTTCCTGGGATT 354
Query 349 TACAGGGAGAAGGTGATTGTGCCGAAATCAAAACCGTATATTTCGTTCATAGGTAATGAG 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TACAGGGAGAAGGTGATTGTGCCGAAATCAAAACCGTATATTTCGTTCATAGGTAATGAG 414
Query 409 AGTTATGCAGGAGATACAGTGATTAGTTGGAGCGACAAAGCTTCAGACCTCGA-TAGCGA 467
|| ||||| |||||||||||||||||||||||||| |||||||||||||| | | ||||
Sbjct 415 AGCTATGCGGGAGATACAGTGATTAGTTGGAGCGATAAAGCTTCAGACCTTGGCT-GCGA 473
Query 468 TGGTAGAGAACTCGGTACTTATAGAACCGCCTCTGTTTCCATTGAATCTGATTTCTTCTG 527
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TGGTAAAGAACTCGGCACTTATAGAACCGCCTCTGTTTCCATTGAATCTGATTTCTTCTG 533
Query 528 TGCTACTGCCATCACTTTTGAGAACACGGTGGTGGCAGAGGC-GGGAGAACAAGGGAAGC 586
||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |||| ||
Sbjct 534 TGCTACTGCCATCACTTTTGAGAACACGGTGGTTGCAGAGGCAGGG-GAACAGGGGAGGC 592
Query 587 AAGCGGTGGCGTTGAGGATTATTGGGGACAAAGCTGTGTTCTATAGAGTTAGGGTTTTGG 646
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AAGCGGTGGCGTTGAGAATAATTGGGGACAAAGCTGTGTTCTATAGAGTTAGGGTTTTGG 652
Query 647 GATCACAAGACACTCTTTTTGATGACAATGGATCTCACTACTTTTACCAATGCTATATCC 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GATCACAAGACACTCTTTTTGATGACAATGGATCTCACTACTTTTACCAATGCTATATCC 712
Query 707 AAGGAAATGTAGATTTCATCTTTGGCAACGCCAAATCACTTTACCAGGCAAAACCCGACT 766
|||| ||||||||||||||||||||||| || |||||||||||||||| | | |
Sbjct 713 AAGGCAATGTAGATTTCATCTTTGGCAATGCGAAATCACTTTACCAGG-A---C-----T 763
Query 767 GTGATATCCACTCAACCGCAAAGAGATATGGCGCGATCGCGGCTCATCATAGAGACTCGG 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 GTGATATCCACTCAACCGCAAAGAGATATGGCGCGATCGCGGCTCATCATAGAGACTCGG 823
Query 827 AGACTGAAGATACCGGGTTCTCGTTTGTGAACTGTGATATCAATGGTACTGGGCAGATTT 886
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 824 AGACTGAAGATACCGGGTTCTCCTTTGTGAACTGTGATATCAGTGGTACTGGGCAGATTT 883
Query 887 ACCTGGGAAGAGCTTGGGGAAACTACTCGAGAACTGTTTATTCAAACTGTTTCATAGCTG 946
|| | ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 884 ACTTAGGAAGGGCTTGGGGAAACTACTCAAGAACTGTTTATTCAAACTGTTTCATAGCTG 943
Query 947 ATATTATCACTCCTGTGGGCTGGAGTGACTGGAAAGATCCTGAGAGGCAAAGCAAGGTGA 1006
||||||||||||||||||||||||||||||||||| | |||||||||||||| || ||||
Sbjct 944 ATATTATCACTCCTGTGGGCTGGAGTGACTGGAAACACCCTGAGAGGCAAAGGAAAGTGA 1003
Query 1007 TGTTTGGGGAGTACAATTGCAGGGGAAGAGGAGCAGAGAGAGGAGGCAGAGTACCGTGGT 1066
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1004 TGTTCGGGGAGTACAATTGCAGGGGAAGAGGAGCAGAGAGAGGAGGCCGAGTACCGTGGT 1063
Query 1067 CGAAAACTCTTACCAGAGATGAAGTGAAGCCTTTTCTGGGCAGAGAGTTCATATATGGAG 1126
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1064 CGAAAACTCTTACCAGAGATGAAGTGAAGCCTTTTCTGGGAAGAGAGTTCATATATGGAG 1123
Query 1127 ATCAATGGCTGAGACTCTAATTCTATTTTT-AACCGGACGGACATAAAGGTCCAGCTAGC 1185
|||||||||||||||||||| || ||||| |||||||| | ||||||||||||||||
Sbjct 1124 ATCAATGGCTGAGACTCTAAATCC-TTTTTCAACCGGAC--A--TAAAGGTCCAGCTAGC 1178
Query 1186 TAACAGGAGATGATGATCTAATTATACTCTATACATTTGTAATTAGTTTGAATCTGAGTA 1245
||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||
Sbjct 1179 TAACAGGAGATGATGATCTAATTCTACTCTATTCATTTGTAATTAGTTTGAAT-T---TA 1234
Query 1246 GAGAGAAATAGAATCTGCATG 1266
|||||||||||||||||||||
Sbjct 1235 GAGAGAAATAGAATCTGCATG 1255
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1267 AAAGTAAATGAAACCCAGGTTTTGGTTTTAGAT 1299
|||||||||||||||||||||||||||||||||
Sbjct 1270 AAAGTAAATGAAACCCAGGTTTTGGTTTTAGAT 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5