BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495651
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55630.1 | Symbols: KCO1, TPK1, ATKCO1, ATTPK1 | Outward rec... 1816 0.0
> AT5G55630.1 | Symbols: KCO1, TPK1, ATKCO1, ATTPK1 | Outward rectifying
potassium channel protein | chr5:22531400-22533118
FORWARD LENGTH=1635
Length=1635
Score = 1816 bits (983), Expect = 0.0
Identities = 1134/1207 (94%), Gaps = 9/1207 (1%)
Strand=Plus/Plus
Query 1 ATGTCAAGCGATTCTGCTCGTACACCATTGTTACCTACCGAGAAGTTAGATCCCATGGCT 60
||||| || ||| | |||||||| ||||||||||| || |||||| ||||| ||||||||
Sbjct 319 ATGTCGAGTGATGCAGCTCGTACGCCATTGTTACCCACTGAGAAGATAGATACCATGGCT 378
Query 61 CAAGATTTCAACCTAAACTCAAGAA---CTTCTTCAAGAAAAAGAAGATTGCGTCGCTCT 117
|||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||
Sbjct 379 CAAGATTTCAACCTGAACTCAAGAACTTCTTCTTCAAGAAAACGAAGATTGCGTCGCTCT 438
Query 118 AGAAGCGCTCCTCGTGGTGATTGTATGTACAATGATGATGTCAAAATCGATGAACCGCCT 177
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 439 AGAAGTGCTCCTCGTGGTGATTGTATGTACAATGATGATGTCAAAATCGACGAACCACCT 498
Query 178 CCTCATCCTAGTAAAATCCCAATGTTTAGTGATCTAAACCCGAATCTCAGGCAAGTGATC 237
|||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 499 CCTCATCCGAGTAAAATCCCAATGTTCAGTGATCTAAACCCGAATCTCAGGCGAGTGATC 558
Query 238 ATGCTCTTGGCTTTATATC-TAGCCATTGGTACTCTCTGTTTCTACCTCGTGAGAGACCA 296
||| ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 559 ATGTTCTTGGCTTTATATCTTA-CCATTGGTACGCTCTGTTTCTACCTCGTGAGAGACCA 617
Query 297 GATCTCCGGTCATAAGACCAATGCTGTGTTAGATGCTGTCTATTTCTGTATAGTAACGAT 356
||||||||||||||| |||| || |||| |||||||| ||||||||||||||||||||||
Sbjct 618 GATCTCCGGTCATAAAACCAGTGGTGTGGTAGATGCTCTCTATTTCTGTATAGTAACGAT 677
Query 357 GACAACTGTTGGATACGGTGACCTTGTCCCTAATAGTTCCGCCTCAAGGCTACTTGCTTG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 GACAACTGTTGGATACGGTGACCTTGTCCCTAATAGTTCCGCCTCAAGGCTACTTGCTTG 737
Query 417 TGCCTTTGTCTTCTCGGGAATGGTCCTCGTTGGTCACCTTTTAAGTCGAGCAGCGGATTA 476
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 738 TGCCTTCGTCTTCTCGGGAATGGTCCTCGTTGGTCACCTCTTAAGTCGAGCGGCGGATTA 797
Query 477 TCTGGTGGAGAAGCAAGAGACTTTGCTCGTTAGGGCTTTCCATTTGCGTCAAAGCTTTGG 536
||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 798 TCTAGTGGAGAAACAAGAGGCTTTGCTCGTTAGGGCTTTCCATTTGCGTCAAAGCTTTGG 857
Query 537 TCCAACAGACATTCTCAAGGAGTTGCATACTAACAAGTTGAGATACAAATGCTATGCCAC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 858 TCCAACAGACATTCTCAAGGAGTTGCATACTAACAAGTTGAGATACAAATGCTATGCTAC 917
Query 597 ATGCCTTGTCCTGGTAGTCCTCTTCCTTGTTGGTACGATTTTCCTTGTAATGGTTGAGAA 656
|||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 918 ATGCCTTGTCCTTGTAGTCCTCTTCATTGTTGGCACGATTTTCCTTGTAATGGTTGAGAA 977
Query 657 AATGCCGGTTATCGAAGCTTTCTACTGCGTATGTTCCACGGTAACGACATTGGGTTATGG 716
||||||||||||| ||||||||||||||| || |||||||| || ||||||||||||||
Sbjct 978 AATGCCGGTTATCTCAGCTTTCTACTGCGTCTGCTCCACGGTTACAACATTGGGTTATGG 1037
Query 717 TGATCAGAGCTTTAACTCGGGAA-CAGGACGCCTTTTTGCTGTGTTTTGGATCTTGACGA 775
||| ||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 1038 AGATAAGAGCTTTAACTCGG-AAGCCGGACGCCTTTTTGCTGTGTTTTGGATCTTGACGA 1096
Query 776 GCACCATTTGTTTGGCTCAGTTTTTCCTCTATGTAGCTGAGCTAAATACGGAAAACAAAC 835
||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1097 GCAGCATATGTTTGGCTCAGTTTTTCCTTTATGTAGCTGAGCTAAATACAGAAAACAAAC 1156
Query 836 AGAGGGCGTTAGTGAAATGGGTTTTAACGCGAAGAATCACAAACAATGATCTCGAAGCCG 895
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1157 AGAGGGCGTTGGTGAAATGGGTTTTAACGCGAAGAATCACAAACAATGATCTCGAAGCAG 1216
Query 896 CTGATCTTGATGAAGATGGAGTCGTTGGAGCTGCAGAGTTTATTGTATATAAACTGAAAG 955
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1217 CTGATCTCGATGAAGATGGAGTTGTTGGAGCTGCAGAGTTTATTGTGTATAAACTGAAAG 1276
Query 956 AAATGGGTAAGATTGATGAGAAAGATATTTCTGGGATAATGGATGAGTTCGAGCAACTTG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 AAATGGGTAAGATTGATGAGAAAGATATTTCTGGGATAATGGATGAGTTCGAGCAACTTG 1336
Query 1016 ATTACGATGAATCGGGAACTCTCACGACATCTGACATCGTTCTAGCTCAGACAACGTCTC 1075
||||||||||||| |||||||||||||| |||||||||||| |||||||||| |||||||
Sbjct 1337 ATTACGATGAATCAGGAACTCTCACGACTTCTGACATCGTTTTAGCTCAGACCACGTCTC 1396
Query 1076 AGATTCAAAGGTAAGCCTCATTGTCATCATCATCTTGCGAAGATGAATCAGAATCTTTGT 1135
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1397 AGATTCAAAGGTAAGCCTCATCATCATCATCATCTTGCGAAGACGAATCAGAATCTTTGT 1456
Query 1136 TAAGTTATACCTGCACACAACAAAAAAGCA-AAGAGATTGAACAGTTTTTGGAAATTTTG 1194
| |||||||||| ||||||||||||| || |||||| |||||||||||| |||||||||
Sbjct 1457 TTAGTTATACCTTCACACAACAAAAA-GCCGAAGAGAGTGAACAGTTTTTCGAAATTTTG 1515
Query 1195 TTTGTTT 1201
|||||||
Sbjct 1516 TTTGTTT 1522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5