BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495652
Length=569
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55640.1 | Symbols: | unknown protein; Has 30201 Blast hits... 571 2e-162
> AT5G55640.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22533159-22534117
REVERSE LENGTH=729
Length=729
Score = 571 bits (309), Expect = 2e-162
Identities = 423/474 (89%), Gaps = 23/474 (5%)
Strand=Plus/Plus
Query 117 TCCATGAACGTTAGTCTTCAATGGATACTTCTGTAATACAGACGAATCTTCCCAAGGTAG 176
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 175 TCCATGAACGTTAGTCTTCAATGGATACATCTGTAATGCAGACGAATCTTCCCAAGGTAG 234
Query 177 AAGACGATGATGAGTGGGACACTGATGGGTTTGTGATTCCAAGCTTGGAGATTGGAGAAG 236
||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 235 AAGACAATGATGAATGGGACACTGATGGGTTTGTGATTCCGAGCTTGGAGATTGAAGAAG 294
Query 237 ACAATGTTAATAATGAT--T--TT--GAAGTTGAAACATCAAAA---------CCTAAGA 281
|||| ||||||||| || | || |||||||||||||||||| |||||||
Sbjct 295 ACAAGGTTAATAATAATAATGATTCAGAAGTTGAAACATCAAAACCTTCTTCTCCTAAGA 354
Query 282 TTAAAGCTGAAGAAAACATCTACTTAGGACCACATGGAGCTCCTCCCTCGCAGCTACAAG 341
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 355 GTAAAGCTGAAGAAAACATCTACTTAGGACCACATGGAGCTCCTCCTTCGCAGCTACAAG 414
Query 342 ATGGTAATA--AA-ACATCTAGCCGCAAGCAGCGGTTTAAGCAGAAGCTCAAGGAAGCTG 398
||||| || || ||||| ||||||||||||||||||||||||| |||||||||||| |
Sbjct 415 ATGGTGGTAGTAACACATCGAGCCGCAAGCAGCGGTTTAAGCAGATGCTCAAGGAAGCAG 474
Query 399 ACCAGAAAATGAGCGGCTCTGGTCGAGAGAACAAAATGGCCAACTTAAGAGAGCTTGTAG 458
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 475 ATCAGAAAATGAGCGGCTCTGGTCGAGAAAACAAAATGGCTAACTTAAGAGAGCTTGTAG 534
Query 459 GCAGCGG--C-GGCGCAGAGGGACGAACTAAAACTGG-AAAAGGTGTTTCAAGAGACTGG 514
|| | || | || |||||| | ||||||| | ||| ||||||||||||||||||||||
Sbjct 535 GCGGGGGTGCAGGTGCAGAGAAAGGAACTAATA-TGGGAAAAGGTGTTTCAAGAGACTGG 593
Query 515 CTTGACCCACATTGCCACGAATCTCAGTTCGAGAAACGACGACTTCCCTAACGC 568
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 594 CTTGACCCTCATTGCCATGAATCTCAGTTCGAGAAACGACGACTTCCATAACGC 647
Score = 189 bits (102), Expect = 2e-47
Identities = 113/118 (96%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 CCTTTTTCCAAGCTCTAACATTTAGGGTTTCGCGAAAAATCAATCAGGTGAAAAATAATC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 CCTTTTCCCAAGCTCTAACATTTAGGGTTTCGCGAAAAATCAATCAGGTGAAAAATAATC 83
Query 61 GAATTATT-TCGAAATTGATACATAAATTCACATTCAAAAGTCAAAGAGCTGAGAAAT 117
|||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 84 GAATTATTGTA-AAATTGATACATAAATTCACATTCAAAAGCCAAAGAGCTGAGAAAT 140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27327375968
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5