BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495656
Length=1958
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55700.1 | Symbols: BMY6, BAM4 | beta-amylase 4 | chr5:22551... 3247 0.0
AT5G55710.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 122 9e-27
> AT5G55700.1 | Symbols: BMY6, BAM4 | beta-amylase 4 | chr5:22551749-22554964
FORWARD LENGTH=1982
Length=1982
Score = 3247 bits (1758), Expect = 0.0
Identities = 1898/1965 (97%), Gaps = 12/1965 (1%)
Strand=Plus/Plus
Query 1 aaaaagaaaagaaaaagagaaataaaaTTTTGCGTTTCAAGTACTCCATCTCCGTCTCTT 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 8 AAAAAGAAAAGAAAAAGAGAAATAGAATTTTGCGTTTCAAGTACTCCATCTCCGTCTCTT 67
Query 61 TTCCTCCGCATCTAAAACCATCAGAGAAATATCTCCGACGTAGGAAAAGTAACGAAAATG 120
|||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||
Sbjct 68 TTCCTCCGCATCTAAAACCATCTGAGAAATATCTCCGACGAAGGAGAAGAAACGAAAATG 127
Query 121 GCGGAGACTGGAGTAATCGGATGTGGCTGCCGCGGAGTTACCGGCGGAAATTTCTTCCAT 180
|||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 128 ACGGAGACTGGAGTAATCGGATGTGGCTGTCGCGGAGTCACCGGCGGCAATTTCTTCCAT 187
Query 181 CCCGGAGGATTTTCTTTGAAATCTTGTTTCCTCGAGCAGAGTACAAAGCGTAATCGTAAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 CCCGGAGGATTTTCTTTGAAATCTTGTTTCCTCGAGCAGAGTACAAAGCGTAATCGTAAC 247
Query 241 TTTTTCCGAAGCGTTTCTATGATTCCTCCTTCCAAACGCGGCCGTTTCATCACTAAGTGG 300
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
Sbjct 248 TTTTTCCGAAGCGTTTCTATGATTCCTCCTTTCAAACGCGGTCGTTTCATCACTAAGTTG 307
Query 301 CGTTCCGTCGCCGGAAACAGCCGAATCTTTAGCATGGATGCTCGAGAGAAGTCACGATCG 360
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 308 CGTTCCGTCGCCGGGAACAGCCGAATCTTTAGCATGGATGCTCGAGAGAAATCACGATCG 367
Query 361 TTTGTGTTGGTATCATCAAGGCACAAGAGAGTTCCAGTTTTTGTGATGATGCCAATTGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 368 TTTGTGTTGGTATCATCAAGGCACAAGAGAGTTCCAGTTTTTGTGATGATGCCGATTGAT 427
Query 421 ACATTTGGAATTGATGCTTCTGGGTGCCCAAAGATTAAAAGGCTCAAGGCTTTAACTGTT 480
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 428 ACATTTGGAATTGATGCTTCTGGGTGTCCAAAGATTAAAAGGCTCAAGGCTTTAACTGTA 487
Query 481 TCTCTCAAGGCACTCAAGTTAGCTGGTGTTCATGGAATCGCAGTTGAGGTTTGGTGGGGG 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TCTCTTAAGGCACTCAAGTTAGCTGGTGTTCATGGAATCGCAGTTGAGGTTTGGTGGGGG 547
Query 541 ATTGTAGAGCGTTTCTGTCCTCTCGAGTTTAAATGGTCACTGTATGAAGAGCTCTTTAGA 600
|||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 548 ATTGTAGAGCGTTTCTCTCCTCTTGAGTTTAAATGGTCACTGTATGAAGAGCTTTTTAGA 607
Query 601 CTGATTTCTGAGGCAGGGCTGAAGTTACATGTTGCTCTTTGCTTTCATTCAAATATGCAC 660
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 608 CTGATTTCTGAGGCAGGGTTGAAGTTACATGTTGCTCTTTGCTTTCATTCAAATATGCAT 667
Query 661 CTGTTTGGTGGAAAAGGAGGCATCAGTCTTCCACTCTGGATCCGAGAGATTGGAGACGTC 720
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 TTGTTTGGTGGGAAAGGAGGCATCAGTCTTCCACTCTGGATCCGAGAGATTGGAGACGTC 727
Query 721 AATAAGGACATATACTATCGAGATAAAAGTGGACTTTCCAACAATGACTACCTCACACTT 780
|||||||||||||||||| |||||||||| ||| |||||||||||||||| |||||||||
Sbjct 728 AATAAGGACATATACTATAGAGATAAAAGCGGATTTTCCAACAATGACTATCTCACACTT 787
Query 781 GGAGTCGATCAACTTCCTTTGTTCGGTGGCCGTACTGCTGTCCAATGCTATGAAGATTTT 840
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 788 GGAGTCGATCAACTTCCTTTGTTCGGTGGCCGTACTGCTGTTCAATGCTATGAAGATTTT 847
Query 841 ATGCTCAGTTTTTCTACAAAATTTGAGCCTTATTTTGGGAACGTGATTGAAGAAATAAGT 900
|||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 848 ATGCTCAGTTTTTCAACAAAATTTGAGCCATATCTTGGGAATGTGATTGAAGAAATAAGT 907
Query 901 ATAGGTCTTGGTCCTTCGGGGGAGCTTAGATATCCTGCACATCCTTCTGGAGATGGGAGG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 ATAGGTCTTGGTCCTTCGGGGGAGCTTAGATATCCTGCACATCCTTCTGGAGATGGGAGG 967
Query 961 TGGAAATTCCCTGGAATTGGTGAATTCCAATGCCATGACAAGTACATGATGGAAGACTTG 1020
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TGGAAATTTCCTGGAATTGGTGAATTCCAATGCCATGACAAGTACATGATGGAAGACTTG 1027
Query 1021 ATGGCAGTGGCATCCCAAGAAGGCAAACCTCAATGGGGAAGCAGAGATCCTCCGAATACC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 ATGGCAGTGGCATCCCAAGAAGGCAAACCTCAATGGGGAAGCAGAGATCCTCCGAATACC 1087
Query 1081 GGCTGCTATAATAGCTTTCCATCTGGAGTTCCGTTCTTTGAGGAGGGCAATGATAGCTTT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GGCTGCTATAATAGCTTTCCATCTGGAGTTCCGTTCTTTGAGGAGGGCAATGATAGCTTT 1147
Query 1141 CTCTCTGACTATGGTCGTTTCTTTCTAGAATGGTACAGTGGGAAGTTGATTTGTCATGCT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 CTCTCTGACTATGGTCGTTTCTTTCTAGAATGGTACAGTGGGAAGTTGATTTGTCATGCT 1207
Query 1201 GATGCTATTCTTGCAAAGGCAGCCGATGTTTTGCGGAGACGTCAGGAAGAAGAGAAAAGC 1260
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1208 GATGCTATTCTTGCAAAGGCAGCCGATGTCTTGCGGAGACGTCAGGAAGAAGAGAAAAGC 1267
Query 1261 TCTGTAATGCTGGTTGCAAAAATTGGTGGAATCTATTGGTGGTATAAGACATCTTCACAC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 TCTGTAATGCTGGTTGCAAAAATTGGTGGAATCTATTGGTGGTATAAGACATCTTCACAC 1327
Query 1321 CCCGCTGAACTAACTGCAGGTTATTACAACACCGCCCTCAGGGATGGTTATGATCCTGTC 1380
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1328 CCCGCTGAACTAACTGCAGGTTATTACAACACCTCCCTCAGGGATGGTTATGATCCTGTA 1387
Query 1381 GCTTCTGTCTTGTCTCGTCATGGTGCTGCTCTGCAT-ATCCCCTGTTTGGATATGGCAGA 1439
||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 1388 GCTTCCGTCTTGTCTCGTCATGGTGCTGCTCT-CAACATCCCCTGCTTGGATATGGCAGA 1446
Query 1440 CAGTGAAACACCTGAGAAATATCTTTGCAGCCCTGAAGGATTGCGTAGACAGATACACAA 1499
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1447 TAGTGAAATACCTGAGAAATATCTTTGCAGCCCTGAAGGATTACGTAGACAGATACATGA 1506
Query 1500 TGTTTCGAAGAAGTGGACAATACAGGTGACTGGTAGAAACACAAGCGAAAGATTTGATGA 1559
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1507 TGTTTCGAAGAAGTGGACAATACATGTGACTGGTAGAAACACAAGCGAAAGATTTGATGA 1566
Query 1560 GATGGGACTAAGGCAAATACGAGAGAACTGTGTGCAACCGAATGGCGACACTCTAAGATC 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 GATGGGACTAAGGCAAATACGAGAGAACTGTGTGCAACCGAATGGCGACACTCTAAGATC 1626
Query 1620 TTTTACGTTTTGCAGAATGAATGAGAAGATCTTTAGGGGGGAGAACTGGAACAACTTTGT 1679
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1627 ATTTACGTTTTGCAGAATGAATGAGAAGATCTTTAGGGTCGAGAACTGGAACAACTTTGT 1686
Query 1680 CCCTTTCATTAGACAGATGAGTGCAGATATGTAAA-ACACTCAC-ACCACCATTGGTGTG 1737
||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||||
Sbjct 1687 CCCTTTCATTAGACAGATGAGTGCAGATATGTAAACACACTCACCACC-C-ATTGGTGTG 1744
Query 1738 TTTGTCTTTTGTTACAGAATTC-ATCTTTCCTCACCATATTGCTTTTTCAAATATGTGAT 1796
|||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct 1745 TTTGTCTTTTGTTACAGAAT-CGATCTTTCCTCACCATATTGCTTTTTCAGATATGTGAT 1803
Query 1797 GAGGAGAACTAATCAAATCAAAA-TTGTTATATGATAAAATCTCTCTCTGTTTCTATTCT 1855
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1804 GAGGAGAACTAATCAAATCAAAAATTGTTATATGATAAAATCTCTCTCTGTTTCTATTCT 1863
Query 1856 TCATTGTGTTCTAACTCTGTGGCAAAAGTCT-GCAGAAACCTTTTTCATTGGATCAAAAA 1914
||||| ||||||| |||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 1864 TCATTTTGTTCTATCTCTATTGCAAAAGTCTTGCAGAAACCTTTTTCATTGGATCAAAAA 1923
Query 1915 GTTACATTGTATGTTTTGATTATCAGAAA-CAGATCCAATACAGA 1958
||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1924 GTTACATTGTATGTTTTGATTATCAGAAAGC-GATCCAATACAGA 1967
> AT5G55710.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Uncharacterised conserved
protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:22554878-22555650
REVERSE LENGTH=773
Length=773
Score = 122 bits (66), Expect = 9e-27
Identities = 71/73 (97%), Gaps = 2/73 (3%)
Strand=Plus/Minus
Query 1887 GCAGAAACCTTTTTCATTGGATCAAAAAGTTACATTGTATGTTTTGATTATCAGAAA-CA 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 773 GCAGAAACCTTTTTCATTGGATCAAAAAGTTACATTGTATGTTTTGATTATCAGAAAGC- 715
Query 1946 GATCCAATACAGA 1958
|||||||||||||
Sbjct 714 GATCCAATACAGA 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96987452940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5