BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495658
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55720.1 | Symbols: | Pectin lyase-like superfamily protein... 2109 0.0
> AT5G55720.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:22556047-22557725 FORWARD LENGTH=1408
Length=1408
Score = 2109 bits (1142), Expect = 0.0
Identities = 1329/1416 (94%), Gaps = 25/1416 (2%)
Strand=Plus/Plus
Query 1 ATGTCAATTGTATGTACGATTTTCTTGTTTCTCTT-AAC-CGTATCTTCTGCGTTCGCGT 58
|||||||||||||||||| |||||||||||||||| ||| | | |||| |||||| || |
Sbjct 1 ATGTCAATTGTATGTACGTTTTTCTTGTTTCTCTTAAACAC-T-TCTTTTGCGTTTGCAT 58
Query 59 TTGCGGTTCCTAAACCGCCAATCGTAAGGCA-ACTATCAAC-ATCAGTGACATCAAATTC 116
||||| |||||||||||||||| |||||| | ||||||||| | ||||||||||||||||
Sbjct 59 TTGCGATTCCTAAACCGCCAATAGTAAGG-AGACTATCAACGA-CAGTGACATCAAATTC 116
Query 117 AACA--G-CTTCTTGCTCAGCAAATGGAAATCCAATCGATGACTGCTGGAGATGCGATGA 173
|||| | ||||||||||||| |||||||||||||||||||| || ||||||||||| ||
Sbjct 117 AACAGCGTCTTCTTGCTCAGCCAATGGAAATCCAATCGATGAGTGTTGGAGATGCGACGA 176
Query 174 AAACTGGAAGGACAACCGCAAAAACCTCGCGGATTGCGCGGTTGGATTTGGACGCGACTC 233
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 177 AAACTGGAAGGACAACCGCAAAAACCTCGCGGATTGCGCGGTTGGATTCGGACGCGACTC 236
Query 234 CATTGGCGGTAGAGCCGGAGAGTTCTACACAGTAACTGATTCAGGAGACGACAATCCTCT 293
||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 237 AATTGGCGGTAGAGCCGGGGAGTTCTACACGGTGACTGATTCAGGAGACGACAATCCTCT 296
Query 294 AAATCCATCTCCAGGTACATTACGGTACGCTGCAACACAAGATCAACCTCTATGGATCAT 353
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 297 AAATCCAACTCCAGGTACATTACGGTACGCTGCGACACAAGATCAACCTCTATGGATCAT 356
Query 354 TTTTGATCGAGACATGGTAATACAACTAAAACAAGATCTCCAAGTAGCATCATATAAAAC 413
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 357 TTTTGATCGAGACATGGTAATACAACTAAAACAAGATCTTCAAGTAGCTTCATACAAAAC 416
Query 414 CATTGATGGTAGAGGAAATAACGTGCAAATAGCTTATGGGCCGTGTTTAACTTTATATAA 473
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 417 CATTGATGGTAGAGGAAATAACGTACAAATAGCTTATGGACCGTGTTTAACTTTATATAA 476
Query 474 AGTAAGTAATGTTATTATAAACAATCTTTATATTCACGATTGTGTTCCGGCGAAACGGAA 533
||| ||||| ||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 477 AGTTAGTAACATTATTATAAACAATCTTTATATTCACGATTGTGTTCCCGTGAAACGGAA 536
Query 534 TGCTTTATCGTCGTTGGGAGGATACTCGGATGGAGATGGAATCTCGATATTCGAGTCTCG 593
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 537 TGCTTTATCGTCGTTGGGAGGATACTCGGATGGAGATGGAATATCGATATTCGAGTCTCG 596
Query 594 AGATATTTGGATTGATCATTGTACGTTAGAGAAATGTTACGATGGGCTTATTGATGCGGT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGATATTTGGATTGATCATTGTACGTTAGAGAAATGTTACGATGGGCTTATTGATGCGGT 656
Query 654 GAATGGATCAACGGATATAACGATTTCGAATAGTTACATGTTGAATCATAATGAAGTCAT 713
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GAATGGATCCACGGATATAACGATTTCGAATAGTTACATGTTGAATCATAATGAAGTCAT 716
Query 714 GCTTTTGGGTCATAGTGATGAGTATTCCGGTGATCGGGATATGCGAGTTACGATCGCATT 773
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 GCTTTTGGGCCATAGTGATGAGTATTCCGGTGATCGGGATATGCGAGTTACGATCGCGTT 776
Query 774 TAACTATTTTGGTGAAGGACTTGTCCAGAGAATGCCGAGGTGCAGGCATGGATATTTTCA 833
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 777 TAACTATTTTGGTGAAGGACTTGTCCAAAGAATGCCAAGGTGTAGGCATGGATATTTTCA 836
Query 834 CATAGTGAATAACATTTATAGAGAGTGGAAGATGTATGCTATCGGTGGAAGTGCTAATCC 893
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 837 CATAGTGAATAACATTTATAGAGACTGGAAGATGTATGCTATTGGTGGAAGTGCTAATCC 896
Query 894 AACGATATTTAGCCAAGGAAATGTTTTTATAGCTTCCAATAATCAGTTCACCAAGGAGGT 953
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 897 AACGATCTTTAGCCAAGGAAATGTTTTCATAGCTTCCAATAATCAGTTCACCAAGGAGGT 956
Query 954 AACAAAGCGAGAGAGTGCAGATGGAGACGAAGAATGGAAGGAATGGAATTGGAAATCAGA 1013
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 957 TACAAAGCGAGAGAGTGCAGATGGAGACGAAGAATGGAAGGAATGGAACTGGAAATCAGA 1016
Query 1014 AGGAGATGAAATGGTTAACGGCGCTTACTTTACACCGTCAGGGAAAGAGGATTCTCCGAG 1073
|||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1017 AGGAGACGAAATGGTTAACGGAGCTTTCTTTACACCGTCAGGGAAAGAGGATTCTCCGAG 1076
Query 1074 CTATGCGAAATTTTCGAGTATGGTAGCTCAACCAGCTTCACTTCTCAAGACCACACATCC 1133
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1077 CTACGCGAAATTTTCGAGTATGGTAGCTCGACCAGCTTCACTTCTCAAGACCACACATCC 1136
Query 1134 ATCAGTAGGTGTTCTTAGTTGTGAAATTGACCAAGCTTGTTAAAA-CACAAACATAAGCT 1192
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1137 ATCAGTAGGTGTTCTTAGTTGCGAAATTGACCAAGCTTGTTAAAAACACAAACATAAGCT 1196
Query 1193 TGTGACCAAATCTAGTAAT-GTCcttcttcttctttttttcttttacttcttcttcttGT 1251
|||||||||||||||| | ||||||||| ||||||||| || ||||| ||| ||||
Sbjct 1197 TGTGACCAAATCTAGTGTTTGTCCTTCTTTTTCTTTTTTGCT----CTTCTACTTGTTGT 1252
Query 1252 GGTTATTGTTATAGCACATAGGATTTGTATTGAAT---ATGATGATCATAGACCCAAACA 1308
|||||||||||| | | |||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1253 GGTTATTGTTATCGTAAATAGGATTTGTACTGAATGTGATGATGATCATAGACCCAAACA 1312
Query 1309 ACAATTGTTCATTGTCAATTT-TTTACCAAAAA-TTTCTATTAAGAGTCACTAAGTTTCG 1366
||||||||||||||||||||| ||||||||||| ||||| ||| ||||||| ||||||||
Sbjct 1313 ACAATTGTTCATTGTCAATTTCTTTACCAAAAAATTTCTTTTACGAGTCACAAAGTTTCG 1372
Query 1367 TCAGATATTTT-T--ATAAATACATAAAAATTACTT 1399
|||| | |||| | |||||||||| ||||||||||
Sbjct 1373 TCAGTTTTTTTATTTATAAATACATTAAAATTACTT 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68925348285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5