BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495659
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55730.1 | Symbols: FLA1 | FASCICLIN-like arabinogalactan 1 ... 2303 0.0
> AT5G55730.1 | Symbols: FLA1 | FASCICLIN-like arabinogalactan
1 | chr5:22558148-22560461 REVERSE LENGTH=1571
Length=1571
Score = 2303 bits (1247), Expect = 0.0
Identities = 1430/1517 (94%), Gaps = 18/1517 (1%)
Strand=Plus/Plus
Query 44 CTCCAACAATGGCGAAGAAGATGAGTTCTCTCATC-TCCATCTTCAACATTCTCCTCCTC 102
||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 62 CTCCAACAATGGCCAAGAAGATGAGTTCTCTCATCAT-CATCTTCAACATTCTCCTTCTC 120
Query 103 ATCACAATC-CAAACCCACGCGCATAACGTCACGCGCCTCCTAGCAAACCACCCATCATT 161
|||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 CTCACAA-CTCAAACCCACGCGCACAACGTCACGCGCCTCCTAGCAAACCACCCATCATT 179
Query 162 CTCCTCCTTCAGCCATTTCCTAACACAAACTCACCTCGCCGACGAAATCAACCGGAGAAC 221
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 CTCTTCCTTCAGCCATTTCCTAACACAAACACACCTCGCCGACGAAATCAACCGGAGAAG 239
Query 222 AACCATAACCGTTTGCGCCGTCGATAACGCCGCTATGTCAGCATTAACCTCAAAAGGCTA 281
|||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||
Sbjct 240 AACCATAACCGTTTGCGCAGTAGATAACGCCGCCATGTCAGCATTAACCTCTAAAGGCTA 299
Query 282 CACAATCTCAACTCTCAAAAACATTCTTTCTCTCCACGTCCTTCTT-GATTACTTCGGAA 340
||| |||||||||||||||||||||| || |||||||||||| || |||||||||||||
Sbjct 300 TACACTCTCAACTCTCAAAAACATTCTCTCCCTCCACGTCCTT-TTAGATTACTTCGGAA 358
Query 341 CTAAAAAACTCCACCAGATCCGTGACGGCTCTGCTCTAGCCGCTACTCTGTTTCAAGCCA 400
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 CCAAAAAACTCCACCAGATCCGTGACGGCTCTGCTCTCGCCGCTACTCTGTTTCAAGCCA 418
Query 401 CCGGAGCTGCTCCTGGAACCACCGGGTTCGTCAATATAACGGATCTGAGAGGTGGTAAAG 460
|||||||||||||||||||| | || ||||| || |||||||||||||||||||||||||
Sbjct 419 CCGGAGCTGCTCCTGGAACCTCAGGATTCGTTAACATAACGGATCTGAGAGGTGGTAAAG 478
Query 461 TTGGGTTTGGTCCTGACGGTGGAGATCTGTCTTCTTTCTTTGTTAAATCTATTGAAGAAG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTGGGTTTGGTCCTGACGGTGGAGATCTGTCTTCTTTCTTTGTTAAATCTATTGAAGAAG 538
Query 521 TTCCGTATAACATCTCCATTATTCAGATCAGTAGAGTTTTACCGTCTGAGACTGCGGCGG 580
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 TTCCGTATAACATCTCCATTATTCAGATCAGTAGAGTTTTACCGTCGGAGACTGCGGCGG 598
Query 581 CTCCGACTCCAGCTCCGGCGGAGATGAATCTCACCGGAATAATGTCTGCTCATGGATGCA 640
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 599 CTCCGACTCCTGCTCCGGCGGAGATGAATCTTACCGGAATAATGTCGGCTCATGGATGCA 658
Query 641 AAGTGTTCGCTGAGACTCTTCTCACTAACCCTGGAGCTTCAAAAACCTATCAGGAGAGTT 700
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAGTGTTTGCTGAGACTCTTCTCACTAACCCTGGAGCTTCAAAAACCTATCAGGAGAGTT 718
Query 701 TAGAAGGAGGCATGACAGTGTTCTGTCCAGGAGATGATGCCATGAAAGGATTCTTGCCCA 760
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 719 TAGAAGGAGGCATGACAGTGTTCTGTCCAGGAGATGATGCAATGAAAGGTTTCTTGCCCA 778
Query 761 AATACAAGAACTTGACAGCTCCAAAGAAAGAAGC-TTTCCTCGATTTCCTTGCTGTCCCG 819
|||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||
Sbjct 779 AATACAAGAACTTGACAGCTCCAAAGAAAGAAGCATTTC-TCGATTTCCTCGCTGTCCCG 837
Query 820 ACATATTACTCAATGGCGATGCTTAAATCCAACAATGGTCCGATGAACACACTCGCGACA 879
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 838 ACATATTACTCAATGGCGATGCTCAAATCCAACAATGGTCCGATGAACACACTTGCGACA 897
Query 880 GATGGAGCCAACAAGTTTGAGCTTACTGTACAGAACGATGGAGAGAAAGTTACACTCAAG 939
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 898 GATGGAGCTAACAAGTTTGAGCTTACTGTACAGAACGATGGAGAGAAGGTTACCCTCAAG 957
Query 940 ACAAGGATCAACACTGTCAAGATCGTTGATACTCTCATCGATGAGCAGCCTTTGGCTATT 999
||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 958 ACAAGGATCAACACTGTCAAGATCGTTGATACTCTTATTGATGAGCAGCCTTTAGCTATA 1017
Query 1000 TATGCTACGGATAAGGTTTTGTTGCCTAAAGAGCTGTTTAAGGCTTCGGCTGTTGAAGCT 1059
||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1018 TATGCGACTGATAAGGTTTTGTTGCCTAAAGAGTTGTTTAAGGCTTCGGCTGTTGAAGCT 1077
Query 1060 CCCGCTCCTGCACCGGCACCAGAGGATGGTGATGCTGCGGATTCTCCAAAACCGGCTAAA 1119
|| |||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1078 CCGGCTCCTGCTCCGGCACCAGAGGATGGTGATGTTGCGGATTCTCCAAAAGCGGCTAAA 1137
Query 1120 GGGAAAGGGAAAGGGAAGAAGAAGAAGGCTGCACCGTCGCCCGATGA--ATC-TTTTGGT 1176
||||||| |||||| |||||||||||||||||||||||||| ||| | ||| |||||||
Sbjct 1138 GGGAAAGCGAAAGGAAAGAAGAAGAAGGCTGCACCGTCGCCAGATAATGATCCTTTTGGT 1197
Query 1177 GACTCGGATTCACCTGCGGAAGGGCCTGATGGAGTGGCGGATGATGCGACTGCAGATGAT 1236
||||||||||| ||||| ||||||||||| |||| ||| ||||||||||| |||||||||
Sbjct 1198 GACTCGGATTCGCCTGCCGAAGGGCCTGACGGAGAGGCCGATGATGCGACGGCAGATGAT 1257
Query 1237 GCCGGTGCGGTTAAGATCATCGGAGGTGCTAAGGCTGGTTTGGTGGTGAgcttgctctgc 1296
|| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1258 GCTGGTGCGGTTAGGATCATCGGAGGAGCTAAGGCTGGTTTGGTGGTGAGCTTGCTCTGC 1317
Query 1297 ttgtttgcttcttcttggcttctataggt-cacttcttgtttcttctattcttctatgtt 1355
||||||||||||||||||||||||||| | |||||| |||||||||||||||| |||||
Sbjct 1318 TTGTTTGCTTCTTCTTGGCTTCTATAGTTTCACTTC--GTTTCTTCTATTCTTCCATGTT 1375
Query 1356 tttttt---GTGAATCTTTTATTTATGGCTTTTCGGGGAAAGTAAATGAGGATTATTTAT 1412
|||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1376 TTTTTTTTTGTGAATCTTTTATTTATGGTTTTTGGGGGAAAGTAAATGAGGATTATTTAT 1435
Query 1413 TTCCCCCTATTATTGAGttttttttttttttttAAAATTTGGTTGTCGAATTAAAATAGT 1472
||||| ||||| ||||||||||||| ||| ||||||| ||||||||||||||||| ||||
Sbjct 1436 TTCCCTCTATTGTTGAGTTTTTTTTATTTATTTAAAAGTTGGTTGTCGAATTAAA-TAGT 1494
Query 1473 CGGTAGTTAATATATTTGTGTGTTCTTGTTTCACGTGTTTGTTTAGTTGATGATGTAAAC 1532
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CGGTAGTTTATATATTTGTGTGTTCTTGTTTCACGTGTTTGTTTAGTTGATGATGTAAAC 1554
Query 1533 AAGTCCTGATTTTGGTG 1549
|||||||||||||||||
Sbjct 1555 AAGTCCTGATTTTGGTG 1571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76455430035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5