BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495661
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55760.1 | Symbols: SRT1 | sirtuin 1 | chr5:22567222-2257096... 2543 0.0
> AT5G55760.1 | Symbols: SRT1 | sirtuin 1 | chr5:22567222-22570963
FORWARD LENGTH=1729
Length=1729
Score = 2543 bits (1377), Expect = 0.0
Identities = 1559/1646 (95%), Gaps = 15/1646 (1%)
Strand=Plus/Plus
Query 1 GAGAGGCAGAGAAGGTG-T-TTCCTCTTGTCCAAAAGAGAAGAC-AAATCTAAATGTCTT 57
||||||||||||||||| | ||| |||||||||||||||||||| ||| |||||||||||
Sbjct 8 GAGAGGCAGAGAAGGTGTTCTTCTTCTTGTCCAAAAGAGAAGACAAAACCTAAATGTCTT 67
Query 58 TAGGTTACGCTGAGAAATTATCCTTCATTGAAGATGTTGGTCAGGTCGGCATGGCCGAAT 117
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 68 TAGGTTACGCAGAGAAATTATCCTTCATTGAAGATGTTGGTCAAGTCGGCATGGCTGAAT 127
Query 118 TCTTCGACCCATCTCATGTTCTACAATGCAAGATTGAAGAACTTGCTAAGTTGATTCAAA 177
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TCTTCGACCCATCTCATCTTCTACAATGCAAGATTGAAGAACTTGCTAAGTTGATTCAAA 187
Query 178 AGAGTAAGCATCTAGTAGTCTTTACTGGTGCAGGCATTTCAACTTCTTGTGGTATTCCTG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 AGAGTAAGCATCTAGTAGTCTTTACTGGTGCAGGCATTTCAACTTCTTGTGGTATTCCTG 247
Query 238 ATTTCCGAGGCCCCAAAGGAATTTGGACGCTACAGCGCGAGGGCAAAGATTTACCCAAAG 297
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 248 ATTTCCGAGGCCCCAAAGGAATTTGGACGTTACAGCGCGAGGGCAAAGATTTACCTAAAG 307
Query 298 CATCTCTGCCATTTCATCGTGCAATGCCGAGCATGACTCATATGGCTTTGGTTGAATTAG 357
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 308 CATCTCTGCCATTTCACCGTGCAATGCCGAGTATGACCCATATGGCTTTGGTTGAATTAG 367
Query 358 AAAGAGCTGGCATTTTAAAATTTGTTATCAGTCAGAATGTGGACGGCTTACATCTTCGAT 417
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 368 AAAGAGCTGGCATTTTAAAATTTGTTATCAGTCAGAATGTGGATGGCTTACATCTTCGAT 427
Query 418 CTGGAATACCAAGAGAGAAGCTTTCGGAACTGCATGGAGACTCTTTTATGGAGATGTGCC 477
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 428 CTGGAATACCAAGAGAGAAGCTTTCTGAACTGCATGGAGACTCTTTTATGGAGATGTGCC 487
Query 478 CATCATGTGGAGCAGAGTACCTGCGTGATTTCGAGGTGGAAACTATTGGATTAAAGGAGA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 CATCATGTGGAGCAGAGTACCTGCGTGATTTCGAGGTGGAAACTATTGGATTAAAGGAGA 547
Query 538 CATCAAGAAGGTGTTCTGTTGAAAAGTGTGGAGCTAAACTTAAAGATACGGTCCTAGACT 597
||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 548 CATCAAGAAAGTGTTCTGTTGAAAAGTGTGGAGCTAAACTTAAAGATACGGTCTTGGATT 607
Query 598 GGGAGGATGCTTTGCCTCCGAAAGAGATTGATCCAGCAGAGAAGCACTGCAAAATGGCTG 657
||||||||||||||||||| ||||| |||||||| || |||||||||||||||| |||||
Sbjct 608 GGGAGGATGCTTTGCCTCCAAAAGAAATTGATCCTGCGGAGAAGCACTGCAAAAAGGCTG 667
Query 658 ATCTTGTACTTTGTTTGGGTACCAGTTTGCAGATAACCCCTGCTTGCAATTTGCCTCTCA 717
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 ATCTTGTACTCTGTTTGGGTACCAGTTTGCAGATAACCCCTGCTTGCAATTTGCCTCTCA 727
Query 718 AGTGTCTCAGAGGTGGAGGCAAGATCGTGATAGTCAATCTTCAGAAAACCCCGAAGGACA 777
||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 728 AGTGTCTCAAAGGTGGAGGCAAGATCGTCATAGTTAATCTTCAGAAAACACCGAAAGACA 787
Query 778 AGAAAGCAAATGTTGTAATTCATGGTCTTGTTGATAAGGTGGTTGCAGGGGTCATGGAAT 837
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 AGAAAGCAAATGTAGTGATTCATGGTCTTGTTGATAAGGTGGTTGCAGGGGTCATGGAAT 847
Query 838 CTCTCAACATGAAGATTCCTCCATATGTTAGAATCGATCTTTTCCAGATAATCCTAACTC 897
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 848 CGCTCAACATGAAGATTCCTCCATATGTCAGAATTGATCTTTTCCAGATAATCCTAACTC 907
Query 898 AATCCT-TAAGCGGAGATCAGAGGTTTATTAATTGGACCCTGCGTGTTGCAAGTGTTCAT 956
|||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 908 AATC-TATAAGCGGAGATCAGAGGTTTATTAATTGGACCCTGCGTGTTGCGAGTGTTCAT 966
Query 957 GGATTGACTTCTCAGTTACCATTCATCGAGTCTATCGAGGTTTCTTTCTCAGATAACCAG 1016
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 967 GGATTGACTTCTCAGTTACCATTCATCAAGTCTATTGAGGTTTCTTTCTCAGATAACCAT 1026
Query 1017 AATTACAAAGACGCAGTTCTTGATAAGCAGCCTTTTCTTATGAAAAGGAGAACAGCACGA 1076
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1027 AATTACAAAGACGCAGTTCTCGATAAGCAGCCTTTTCTTATGAAAAGGAGAACAGCACGA 1086
Query 1077 AACGAAACTTTTGATATATTCTTCAAAGTTAATTACAGTGACGGTTGTGACTGTGTCTCC 1136
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1087 AACGAAACTTTTGATATATTCTTTAAAGTTAACTACAGTGACGGTTGTGACTGTGTCTCC 1146
Query 1137 ACTCAACTTAGCCTCCCATTTGAATTCAAGGTTTCAACAGAAGAGCATGAAGAGATAATT 1196
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||
Sbjct 1147 ACTCAACTTAGCCTCCCATTTGAATTCAAGATTTCAACAGAAGAGCATGTAGAGATTATT 1206
Query 1197 GACAAGGAGGCTGTGCTACAAAGCCTGAGAGAGAAAGCAGTTGAAGAATCCAGTTGCGGG 1256
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1207 GACAAGGAGGCTGTGCTACAAAGCCTGAGAGAGAAAGCGGTAGAAGAATCCAGTTGCGGG 1266
Query 1257 CAAAGCGGTGTGGTTGAGAGAAGAGCGGTTTCTGAACCGAGAAGTGAGGCTGTTGTGTAT 1316
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1267 CAAAGCGGTGTGGTTGAGAGAAGAGTGGTTTCTGAACCGAGAAGTGAGGCTGTTGTGTAT 1326
Query 1317 GCTACTGTGACCAGTCTCAGGACTTACCATTGTCAACAATCTCTGCTTGCTAATGGATAC 1376
||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1327 GCTACGGTGACTAGTCTCAGGACTTACCATAGTCAACAATCTCTGCTTGCTAATGGAGAC 1386
Query 1377 CTCAAATGGAAGCTGGAAGGTTCTGGAACGTCCCGTAAACGTTCTAGAACCGGCAAACga 1436
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||
Sbjct 1387 CTGAAATGGAAGCTGGAAGGTTCTGGAACATCCCGTAAACGCTCTAGAACCGGGAAGCGA 1446
Query 1437 aaatcaaaggcacaggaagaagaatcgaaggcataggaaagaagaaaagaaagCTTTTGG 1496
||||| ||||| | || ||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 1447 AAATCGAAGGCTCTGGCAGAAGAAACCAAGGCATAGGAA-GAAGAAAAGAAAGCTTTTGG 1505
Query 1497 TGTATATAAACAATAAAACAAACACTAGTCTAACCGGAATAGAAAATATGGAAGTTAGTG 1556
|||||||||| || | || | ||||||||||||||||| ||||||||||||| ||
Sbjct 1506 TGTATATAAAGAA-A---CA--C--TAGTCTAACCGGAATAGGTAATATGGAAGTTATTG 1557
Query 1557 GCGTTTTGAGGGCTGAGTGAATTTTGTTTTTGGTCCACACTCGGTTCT-TTAAAACCGAA 1615
|||||||||| |||||||||||||||||||||||||||| |||||||| || |||| ||
Sbjct 1558 GCGTTTTGAGAGCTGAGTGAATTTTGTTTTTGGTCCACATTCGGTTCTCTTGAAACAAAA 1617
Query 1616 GTTAACCAGGAATTGAAGGGGATAAT 1641
||||||||||||||||| | ||||||
Sbjct 1618 GTTAACCAGGAATTGAAAGAGATAAT 1643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81073880175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5