BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495662

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46660.1 | Symbols:  | protein kinase C-like zinc finger pro...   278    3e-74
  AT1G44050.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   139    1e-32


> AT5G46660.1 | Symbols:  | protein kinase C-like zinc finger protein 
| chr5:18932181-18933098 FORWARD LENGTH=918
Length=918

 Score =  278 bits (150),  Expect = 3e-74
 Identities = 208/235 (89%), Gaps = 8/235 (3%)
 Strand=Plus/Minus

Query  1    ACATGCAAAATAGTTTGTGCTGGGCTCTGTTTTGTCGCATGCACCGCA-ATGGAATTGGT  59
            |||||||||||||||||||||| || || |||| |||||||||||||| || ||||| ||
Sbjct  420  ACATGCAAAATAGTTTGTGCTGAGCACTATTTTTTCGCATGCACCGCACAT-GAATTCGT  362

Query  60   AAGGACGAAGTTCATCAGCTTTATTGTTGCACCAAAAAAGAGGGACTACAGGGAGCTTAC  119
             || ||  ||   | |   |||||||||||||||||| ||||||||||||||||||||||
Sbjct  361  CAGAAC-TAG--GA-C--TTTTATTGTTGCACCAAAAGAGAGGGACTACAGGGAGCTTAC  308

Query  120  AGATATCATGTTGGTCGCAATCAAGCAAAGATCGGCCTTGTTGATCACGGCTTCTTGTGC  179
            | ||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||||| 
Sbjct  307  ATATACCATGTTGGTCGCAATCAAGCAAAGATCCGCCTTGCTGATCACCGCTTCTTGTGT  248

Query  180  TGGGGAAATGAGAAGAAGAATTAAATGGCCGAAACTTCTCCTTATCCTCCTCCGT  234
            | |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  247  TTGGGAAATGAGGAGAAGAATTAAATGGCCGAAACTTCTCCTTATCCTCCTCCGT  193


> AT1G44050.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr1:16739261-16741513 FORWARD LENGTH=2253
Length=2253

 Score =  139 bits (75),  Expect = 1e-32
 Identities = 103/116 (89%), Gaps = 4/116 (3%)
 Strand=Plus/Minus

Query  78   CTTTATTGTTGCACCAAAAAAGAGGGACTACAGGGAGCTTACAGATATCATGT-TGGTCG  136
            ||||||||||||||||||||||||||||||||||||||||||| |  || ||  |||| |
Sbjct  622  CTTTATTGTTGCACCAAAAAAGAGGGACTACAGGGAGCTTACAAACGTC-TGGGTGGTTG  564

Query  137  CAATCAAGCAAAGAT-CGGCCTTGTTGATCACGGCTTCTTGTGCTGGGGAAATGAG  191
            ||||||||||||||| |  |||||||||||||  ||||||||||||||||| ||||
Sbjct  563  CAATCAAGCAAAGATTCA-CCTTGTTGATCACCACTTCTTGTGCTGGGGAAGTGAG  509



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13672827728


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5