BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495663
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55810.2 | Symbols: NMNAT | nicotinate/nicotinamide mononucl... 499 2e-140
> AT5G55810.2 | Symbols: NMNAT | nicotinate/nicotinamide mononucleotide
adenyltransferase | chr5:22583985-22586347 REVERSE
LENGTH=1147
Length=1147
Score = 499 bits (270), Expect = 2e-140
Identities = 331/361 (92%), Gaps = 2/361 (1%)
Strand=Plus/Plus
Query 429 GAATCTTTCAAAGTCATGCTTGTATGTGGCTCGGATTTACTGCAATCTTTCTGCATTCCT 488
|||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 565 GAATCTCTCAAAGTCATGCTACTATGTGGCTCGGATTTACTGCTATCTTTCTGCACTCCC 624
Query 489 GGTGTTTGGATCCCTGAACAGGTAAGAACTATTTGTAACGACTATGGCATTGTGTGCATC 548
||||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||
Sbjct 625 GGTGTTTGGATCCCTGAACAGTTAAGAACTATTTGCAAAGATTATGGCATTGTGTGCATC 684
Query 549 CGTAGAGAAGGACAGGATGTTGAAAATATGATCTCTGGCGAC-ACAATCTTAAACGAAAA 607
|||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 685 CGTAGAGAAGGACAAGATGTTGAAAATATGATCTCTGGTGACGA-AATCTTAAACGAAAA 743
Query 608 CCATGGTAACATAAAAATCGTTGACAATTTTGTTCCTAATCAGATCAGTTCGTGTAGATT 667
| || |||| | ||||||||||||||| |||||||||||| ||||||||| |||||||
Sbjct 744 CTGTGCTAACGTCAAAATCGTTGACAATACTGTTCCTAATCAAATCAGTTCGAGTAGATT 803
Query 668 AAGGCAATGCATTTCACGAGGGTTATCGGTTAAGTACTTGACTGATGATGGAGTAATAGA 727
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 804 AAGGCAATGCATTTCGCGAGGGTTATCGGTTAAATACTTGACTGAAGATGGAGTAATAGA 863
Query 728 TTATATCAGACAACATCAACTTTACAGTGAGCTCACATGACAAAAGCTGAGAGGAATATT 787
||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||
Sbjct 864 TTATATCAGACAACATCAACTATACACTGAGCTCACATGACAAACGCTGAGAGGATTATT 923
Query 788 A 788
|
Sbjct 924 A 924
Score = 440 bits (238), Expect = 9e-123
Identities = 365/422 (86%), Gaps = 26/422 (6%)
Strand=Plus/Plus
Query 23 GAGACTCAGATTCGATCATCGGAGTTCAATGGATGTCCCCTTACCAGTCGAGAAATTATC 82
|||||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 81 GAGACTGAGATTCAATCATCAGAGTTCAATGGATGTCCCGTTACCAGTCGAGAAATTATC 140
Query 83 TTATGAATCAAACCCTGAGGACAAAACTTGTGTAGTGCTTGTGGCAACTGGGAGTTTCAA 142
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TTATGGATCAAACACTGAGGACAAAACTTGTGTAGTGCTTGTGGCAACTGGGAGTTTCAA 200
Query 143 TCCTCCAACTTTCATGCATTTACGCATGTTTGAGCTGGCGAGAGATGAATTACACTCAAA 202
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 201 TCCTCCTACTTTCATGCATTTACGCATGTTTGAGCTGGCGAGAGATGAATTACGCTCAAA 260
Query 203 AGGATTTCATGTTCTTGGAGGCTATATGTCTCCTGTTAATGATGCGTATAAGAAGAAG-- 260
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 261 AGGATTTCATGTTCTTGGAGGATATATGTCTCCTGTTAATGATGCATATAAGAAGAAGAT 320
Query 261 ---G-G-----CCTTTTATCTGCAGAACATCGT-T-TAGAGATGTGTAATCTA-GCCT-G 307
| | |||||||||||||||||||| | | | || || | || | | || | |
Sbjct 321 TATGTGTAGGGCCTTTTATCTGCAGAACATCTTCTCTTTAG-TG-G-AA-CAATGCGTTG 376
Query 308 TCATAGCTCTGACTTTGTAATGGTTGATCCGTGGGAGGCATCTCAAAGCAGCTACCAACG 367
| || | | | || || | | | | | | ||||||||||||||| |||||||||
Sbjct 377 TT-TA-CAAAAA-TGTGGAA-GCT-GTTTC-TAC-AGGCATCTCAAAGCAACTACCAACG 429
Query 368 AACTTTGGCGGTTTTATCAAGGGTCAAGACTTTCTTAACAACAATTCGACGTGTACCCGA 427
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 430 AACTTTGACGGTTTTATCAAGGGTCAAGACTTTCTTAACAACAAATCGACATGTACCCGA 489
Query 428 GG 429
||
Sbjct 490 GG 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40438488335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5