BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495664
Length=2043
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55830.1 | Symbols: | Concanavalin A-like lectin protein ki... 3271 0.0
> AT5G55830.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:22594655-22596843 FORWARD LENGTH=2189
Length=2189
Score = 3271 bits (1771), Expect = 0.0
Identities = 1957/2048 (96%), Gaps = 7/2048 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCTTTCAAGAAAGCTTCTTGTTCTCTTCTTCACATGGATAACAGCTCTATCCATG 60
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCTATCAAGAAAGCTTCTTGTTATCTTCTTCACATGGATAACAGCTCTATCCATG 60
Query 61 GCGAAACCAATCTTCGTATCATCCGATAACGTGAATTTCACATTCAAATCCTTCACGATT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 61 TCGAAACCAATCTTCGTATCATCCGATAACATGAATTTCACATTCAAATCCTTCACAATC 120
Query 121 CGTAACCTCACCTTCCTCGGCGATTCACATCTCCGAAACGGCGTCGTTGGTCTCACGAGA 180
||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| |||
Sbjct 121 CGTAACCTCACATTCCTCGGAGATTCACATCTCCGAAACGGTGTCGTTGGGCTCACAAGA 180
Query 181 GAGCTTGGTGTTCCCGATACAAGCTCCGGTACAGTAATCTACAACACTCCGATCCTTTTT 240
||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 181 GAGCTAGGTGTTCCCGATACAAGCTCCGGTACAGTAATCTACAACAATCCGATCCGTTTC 240
Query 241 TACGATCCTGATTCAAACACCACGGCGTCTTTCTCCACTCACTTCTCCTTCTCCGTTCAA 300
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 TACGATCCGGATTCAAACACCACGGCGTCTTTCTCCACTCACTTCTCCTTCACCGTTCAA 300
Query 301 AACTTAAACCCAGATCCAACCTCCGCCGGTGACGGACTCGCTTTCTTCCTCTCTCATGAC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 AACTTAAACCCAGATCCAACCTCCGCCGGTGACGGACTCGCTTTCTTCCTCTCTCACGAC 360
Query 361 AACGATACTTTAGGAAGTCCCGGTGGTTACTTAGGTCTCGTCAATTCATCTCAGCCGATG 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 AACGATACTTTAGGAAGTCCCGGTGGTTACTTAGGTCTCGTCAATTCCTCTCAGCCGATG 420
Query 421 AAGAATCGATTCGTCGCTATCGAATTCGATACTAAATTGGATCCACATTTCAACGATCCA 480
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 421 AAGAATCGATTCGTCGCTATCGAATTCGATACGAAATTGGATCCTCATTTCAACGATCCA 480
Query 481 AGTGGTAATCACATTGGTTTAGATGTTGATAGTTTGAACTCAATCGCAACTTCAGATCCT 540
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 AATGGTAATCACATTGGTTTAGATGTTGATAGTTTGAACTCAATCTCAACTTCAGATCCT 540
Query 541 TCGAATTCGTCTCAGATTGATCTTAAATCTGGTAAATCGATCACTTCTTGGATCGATTAC 600
| | |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 541 TTGCTTTCGTCTCAGATTGATCTCAAATCTGGTAAATCGATAACTTCTTGGATCGATTAC 600
Query 601 AAGAACGATTTACGTTTATTGAATGTGTTCTTGAGTTATACAGATCCAATCGCAATC-AC 659
||||||||||||||||||||||| |||||||||||||||||||||||| || | | | ||
Sbjct 601 AAGAACGATTTACGTTTATTGAACGTGTTCTTGAGTTATACAGATCCAGTCACTA-CAAC 659
Query 660 GAAGAAGCCAGAGAAGCCTCTTTTATCAGTGAAGATCGATCTTTCTCCGTTCTTGAACGG 719
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 660 GAAGAAGCCAGAGAAGCCTCTTTTATCGGTTAACATCGATCTTTCTCCGTTCTTGAACGG 719
Query 720 TGAAATGTATGTAGGATTCTCAGGTTCAACAGAAGGAAGCACAGAGATTCATCTGATTGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TGAAATGTATGTAGGATTCTCAGGTTCAACAGAAGGAAGCACAGAGATTCATCTGATCGA 779
Query 780 GAATTGGAGTTTCAAGACTTCTGGGTTTCTTCCGGTGAGATCGAAATCTAATCATCTTCA 839
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 GAATTGGAGTTTCAAGACTTCTGGATTTCTTCCGGTGAGATCGAAATCTAATCATCTTCA 839
Query 840 CAACGTTTCAGATAGTTC--T-GTGAATGATGATCCTGTGGCT-ATACCGAGTAAGAAGC 895
||| |||||||||||||| | ||||||||||||||||| | | ||||||||||||||||
Sbjct 840 CAATGTTTCAGATAGTTCTGTGGTGAATGATGATCCTGTTG-TGATACCGAGTAAGAAGC 898
Query 896 GGAAGCATCGACACAATCTTGCTATTGGACTTGGTATTTCTTGTCCGGTGTTCTTCTGTT 955
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 899 GGAGGCATCGACACAATCTTGCTATTGGACTTGGTATTTCTTGTCCGGTGTTAATCTGTT 958
Query 956 TAGCTCTCTTGGTGTTTGGGTACTTCACTTTTAAGAAATGGAAAAGTGTGAAAGCAGAGA 1015
|||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 959 TAGCTCTCTTTGTGTTTGGGTACTTTACTTTGAAGAAATGGAAAAGTGTGAAAGCAGAGA 1018
Query 1016 AGGAGCTTAAGACTGAGCTTATCACAGGTTTAAGAGAGTTCAGCTATAAAGAGCTTTACA 1075
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 1019 AGGAGCTTAAGACTGAGCTAATCACTGGTTTAAGAGAGTTTAGCTATAAAGAGCTTTACA 1078
Query 1076 CAGCTACAAAAGGGTTTCATTCGAGTAGAGTCATTGGAAGAGGAGCGTTTGGGAATGTTT 1135
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAGCTACTAAAGGGTTTCATTCAAGTAGAGTCATTGGAAGAGGAGCGTTTGGGAATGTTT 1138
Query 1136 ACAGAGCAATGTTTGTTTCCTCTGGGACGATCTCTGCTGTGAAAAGATCGAGACATAATT 1195
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1139 ACAGAGCTATGTTTGTTTCCTCTGGGACGATCTCTGCTGTGAAAAGATCGAGGCATAATT 1198
Query 1196 CAACCGAAGGTAAAACAGAGTTTTTGGCAGAGTTATCGATCATTGCTTGCTTGCGGCACA 1255
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1199 CAACCGAAGGTAAAACAGAGTTTTTGGCAGAGTTATCGATTATTGCTTGCTTGCGGCACA 1258
Query 1256 AGAATCTTGTTCAGTTGCAGGGTTGGTGTAACGAGAAAGGTGAATTGCTTCTTGTCTATG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGAATCTTGTTCAGTTGCAGGGTTGGTGTAACGAGAAAGGTGAATTGCTTCTTGTCTATG 1318
Query 1316 AGTTCATGCCTAATGGAAGTCTTGATAAGATTCTGTATCAAGAGTCAGAAACAGGAGCTG 1375
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1319 AGTTCATGCCTAATGGAAGTCTTGATAAGATTCTGTATCAAGAATCACAAACAGGAGCTG 1378
Query 1376 TGGCTCTTGACTGGTCACATAGGCTGAATATAGCGATTGGTTTGGCTTCAGCGTTGTCTT 1435
|||| ||||||||||| |||||||||||||||||||||||||| || ||||| |||||||
Sbjct 1379 TGGCGCTTGACTGGTCTCATAGGCTGAATATAGCGATTGGTTTAGCATCAGCTTTGTCTT 1438
Query 1436 ATCTTCACCATGAATGTGAGCAGCAAGTGGTTCACAGAGATGTTAAGACGAGCAACATAA 1495
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1439 ATCTTCACCATGAGTGTGAGCAGCAAGTGGTTCACAGAGATATTAAGACGAGCAACATAA 1498
Query 1496 TGCTTGACATAAACTTCAACGCAAGGCTTGGCGATTTCGGTCTAGCTAGACTCACAGAGC 1555
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||
Sbjct 1499 TGCTTGACATAAACTTCAACGCAAGGCTGGGAGATTTTGGTCTAGCTAGACTCACGGAGC 1558
Query 1556 ACGATAAGAGCCCTGTCTCAACCTTAACAGCTGGTACAATGGGTTATTTGGCACCAGAGT 1615
| |||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||||
Sbjct 1559 ATGATAAGAGCCCTGTCTCAACTTTAACCGCTGGTACAATGGGTTACCTCGCACCAGAGT 1618
Query 1616 ATCTCCAATACGGCACAGCGACTGAGAAAACAGATGCTTTTAGCTACGGAGTGGTGATTT 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ATCTCCAATACGGCACAGCGACTGAGAAAACAGATGCTTTTAGCTACGGAGTGGTGATCC 1678
Query 1676 TAGAAGTTGCTTGTGGGAGAAGGCCAATAGATAAAGAACCAGAGAGTCAAAAGACAGTGA 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TAGAAGTTGCTTGTGGGAGAAGGCCAATAGATAAAGAACCAGAGAGTCAAAAGACAGTGA 1738
Query 1736 ATCTGGTGGATTGGGTTTGGAGATTGCACAGTGAAGGAAGAGTTCTTGAAGCTGTGGATG 1795
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 ATCTAGTGGATTGGGTTTGGAGATTGCACAGTGAAGGAAGAGTTCTTGAAGCTGTGGATG 1798
Query 1796 AGAGATTGAAAGGTGAGTTTGATGAAGAAATGATGAAGAAACTGTTGCTTGTGGGTCTTA 1855
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1799 AGAGATTGAAAGGTGAGTTTGATGAAGAAATGATGAAGAAACTTTTGCTTGTGGGTCTTA 1858
Query 1856 AATGTGCTCATCCAGATAGTAATGAGAGACCATCTATGAGACGTGTACTTCAGATACTTA 1915
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1859 AATGTGCCCATCCAGATAGTAATGAGAGACCATCTATGAGACGTGTTCTTCAGATACTTA 1918
Query 1916 ACAACGAGGTTGAGCCAAGTCCGGTTCCGAAGATGAAACCTACACTGTCTTTCTCTTGTG 1975
|||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1919 ACAATGAGATTGAGCCAAGTCCGGTTCCGAAGATGAAACCTACATTGTCTTTCTCTTGTG 1978
Query 1976 GGTTAAGTCTTGATGATATTGTTTCTGAAGATGAAGAAGGAGACAGCATCGTATACGTTG 2035
|||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1979 GGTTAAGTCTTGATGACATTGTTTCGGAAGATGAAGAAGGAGACAGCATCGTGTACGTTG 2038
Query 2036 TATCTTAG 2043
||||||||
Sbjct 2039 TATCTTAG 2046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101254499265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5