BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495666

Length=778
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55850.2 | Symbols: NOI | RPM1-interacting protein 4 (RIN4) ...   472    3e-132


> AT5G55850.2 | Symbols: NOI | RPM1-interacting protein 4 (RIN4) 
family protein | chr5:22603376-22605232 FORWARD LENGTH=915
Length=915

 Score =  472 bits (255),  Expect = 3e-132
 Identities = 282/295 (96%), Gaps = 1/295 (0%)
 Strand=Plus/Plus

Query  212  GGACAAAGGTCGTCCCTTGCCGAAATTTGGTGAATGGGATGTGAATGATCCAGCATCAGC  271
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  295  GGACAAAGGTCGTCCCTTGCCAAAATTTGGTGAATGGGATGTGAATGATCCAGCATCAGC  354

Query  272  AGAAGGTTTCACAGTGATATTCAACAAAGCTAGGGATGAGAAAAAGACTGGGGGCAAACC  331
            ||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  355  AGAAGGTTTTACAGTGATATTCAACAAAGCTAGGGATGAGAAAAAGACCGGTGGCAAACC  414

Query  332  TGGATCACCCGGTAAATCCAGTGAGGGTCATGCTAAGTCTGGAGGAGGAGATCCTAGTAA  391
             ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct  415  GGGATCACCCGGTAAATCCAGTGAGGGTCATGTTAAATCTGGAGGAGGAGATCCTAGTAA  474

Query  392  ACCTCAGCCTGTaaaaaaaaTGGCTCTGCTGCATGCAATCTCCAGCTGTGGACTCTTGAC  451
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  475  ACCTCAGCCTGTAAAAAAAATGGCTCTGCTGCATGCAAGCTCCAGCTGTGGACTCTTGAC  534

Query  452  AGACACAAAGATGGATTTGCTTGCTGCCCAAAGAAT-GTCACAGTGCTTACACAT  505
            |||||||||||||||||||||||||||  ||| ||  ||||||||||||||||||
Sbjct  535  AGACACAAAGATGGATTTGCTTGCTGCTAAAAAAAAAGTCACAGTGCTTACACAT  589


 Score =  346 bits (187),  Expect = 2e-94
 Identities = 259/289 (90%), Gaps = 24/289 (8%)
 Strand=Plus/Plus

Query  512  GTCTTTCTTGAAATTACCCACACa-aaaaaaaaaaaaaGTTCCTAAGATGATTTGGAGCT  570
            |||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||| 
Sbjct  624  GTCTTTCTTGAAATTACCCACACACACAAAAAAAAAAGGTTCCTAAGATGATTTGGAGC-  682

Query  571  TCA-CCACCTTTAGTATCACGATTATGATT-C--CTTCTTTGAAGTTGTTTGTTCTTCTT  626
            ||| |||||||||||||||||||||||||| |  ||||||||||||||||| ||||||||
Sbjct  683  TCACCCACCTTTAGTATCACGATTATGATTCCTTCTTCTTTGAAGTTGTTTCTTCTTCTT  742

Query  627  AAAATGCTGTAAAATCGTGT-TGCCACTTTATTGGaaaaaaaaaaggaagaaaaa--aag  683
            |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||  || 
Sbjct  743  AAAATGCTGTAAAATCGTGTCT-CCATTTTATTGGAAAAAAAAAAGGAAGAAAAACGAAA  801

Query  684  aaaaaCACAGTTACTGTGTCTATATGTAATGATTCTCTTGGG-T-TTT----------AT  731
            |||||||||||||||||||||||||||||||||||||||||| | |||          ||
Sbjct  802  AAAAACACAGTTACTGTGTCTATATGTAATGATTCTCTTGGGGTCTTTTTGTTTTTTGAT  861

Query  732  TTTATGGTGTCTTTTTCCTTGATTTTT-AAAT-ATATTATCTTGTGCTC  778
            ||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct  862  TTTATGGTGTCTTTTTCCTTGATTTTTTAAATTATATTATCTTGGGCTC  910


 Score =  250 bits (135),  Expect = 2e-65
 Identities = 208/238 (87%), Gaps = 26/238 (11%)
 Strand=Plus/Plus

Query  1    AGAAGCaaaaaagaa-tttt-t----ag-aa-taaaaatcaaaaaaggagag-aaaatta  51
            ||||||||||||||| |||| |    || ||  |||||||| |||||||||| |||||||
Sbjct  10   AGAAGCAAAAAAGAATTTTTATAGAAAGAAAGGAAAAATCAGAAAAGGAGAGAAAAATTA  69

Query  52   aaaaagtctctctttt-tc---tt-tt-ttc-t-t--c-t-ttctccgatcaaaaatat-  98
            |||||||||||||||| ||   || || ||| | |  | | |||||||||||||||||| 
Sbjct  70   AAAAAGTCTCTCTTTTCTCTTTTTCTTCTTCGTCTCCCATATTCTCCGATCAAAAATATA  129

Query  99   ttt-tctctcactttccttggttttctcGGCGGCTTCTTCTCCT-CTATTTC-CCC-CAA  154
            ||| ||||||||||||||||||||||||||||||||||||| || ||||||| ||| |||
Sbjct  130  TTTCTCTCTCACTTTCCTTGGTTTTCTCGGCGGCTTCTTCTTCTCCTATTTCTCCCTCAA  189

Query  155  ATCGTTTTCTCCATTTTTCTTGGGATAAATCTTCCTCCTTTCTGCAGACGCCATGTCG  212
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  190  ATCGTTTTCTCCAGTTTTCTTGGGATAAATCTTCCTCCTTTCTGCAGACGCCATGTCG  247



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37826312691


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5