BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495668
Length=2205
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55860.1 | Symbols: | Plant protein of unknown function (DU... 3500 0.0
> AT5G55860.1 | Symbols: | Plant protein of unknown function (DUF827)
| chr5:22609532-22612393 FORWARD LENGTH=2469
Length=2469
Score = 3500 bits (1895), Expect = 0.0
Identities = 2107/2210 (95%), Gaps = 11/2210 (0%)
Strand=Plus/Plus
Query 1 CTTGATTTTATAGTCTATATAAAGAAAG-AAATGCAAAATGGTTGCTAAGAAGGGACGTA 59
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 255 CTTGATTTTATAGTCTATATAAAGAAAGAAAATGCAAAATGGTTGCTAAGAAGGGACGTA 314
Query 60 GAGATTCTTCAGACTCTTCTCCGATTGTGGAGGTTGGAGAGATTGACACAAGTGCTCCTT 119
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 315 GAGATTCTTCAGACTCTTCTCCAATTGTGGAGGTTGGAGAGATTGACACAAGTGCTCCTT 374
Query 120 TTCAATCTGTTAAAGATGCGGTTAACCTTTTCGGTGAAGCTGCTTTCTCCGCTGAGAAAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TTCAATCTGTTAAAGATGCGGTTAACCTTTTCGGTGAAGCTGCTTTCTCCGCTGAGAAAC 434
Query 180 CGGTCATTCGGAAACCGAGTCCTCAATCCGCTGAGAAAGTTTTGGTGAAGCAAACAGAGC 239
|||| |||| ||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 435 CGGTTTTTCGAAAACCGAATCCTCAGTCTGCTGAGAAAGTTTTGGTGAAGCAAACAGAGC 494
Query 240 TTCACTTGGCTCAGAAAGAGTTGAATAAGTTGAAGGAACAGCTTAAGAATGCTGAGACTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 495 TTCACTTGGCTCAGAAAGAGTTGAATAAGTTGAAGGAACAGCTTAAGAATGCTGAAACTA 554
Query 300 TTAGAGAGCAAGCGTTGAGTGAGCTTGAATGGGCTAAAAGAACGGTTGATGAACTTACTC 359
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 555 TTAGAGAGCAAGCGTTGAGTGAGCTTGAATGGTCTAAAAGAACTGTTGATGAACTTACTC 614
Query 360 GTAAGCTTGAAGCGGTTAATGAGTCGAGAGATTCTGCAAATAAAGCGACTGAAGCTGCTA 419
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 615 GTAAGCTTGAAGCGGTTAATGAGTCTAGAGATTCTGCAAATAAAGCTACTGAAGCTGCTA 674
Query 420 AGAGTCAAATCGGAGAAGCGAAACCGGGAAATGTTTCTGTGGCTAGTAGTAGTAGTGATG 479
|||||| ||| | ||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 675 AGAGTCTAATTGAAGAAGCGAAACCGGGGAATGTTTCTGTAGC---TAGTAGTAGTGATG 731
Query 480 CTCAGACTCGGGATATGGAAGAGTATGGGGAGGTATGTAAGGACCTTGATACCGCGAAGC 539
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 732 CTCAGACTCGGGATATGGAAGAGTATGGGGAAGTATGTAAGGAACTTGATACCGCCAAGC 791
Query 540 AAGAGCTGAGAAAAATCCGTCAGGTTTCGAATGAGATTTTGGAAACAAAGACTGTTGCTT 599
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 AAGAGCTGAGGAAAATCCGTCAGGTTTCGAATGAGATTTTGGAAACAAAGACTGTTGCTT 851
Query 600 TAAGTAAAGTAGAGGAAGCTAAGGAAGTGAGTAAAGTTCATTCTGAGAAGATTGAGTTGC 659
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 852 TAAGTAAAGTAGAGGAAGCTAAGAAAGTGAGTAAAGTTCATTCTGAGAAGATTGAGTTGC 911
Query 660 TTAGAAAAGAAATCGCAACTGTTAATGAATCAGTGGAACAAACGAAGCTTGCATGTTCTC 719
||||||||||||| ||| |||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 912 TTAGAAAAGAAATTGCAGCTGTTAATGAATCAGTTGAACAGACGAAGCTTGCGTGTTCTC 971
Query 720 AAGCTCGAAAAGAACAATCTGAGATATTTGCAGAGAAAGAGATTCAGCAGCAATCGTATA 779
|||| ||||| |||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 972 AAGCCCGAAAGGAACAATCTGAGATATTTGCGGAGAAGGAGATTCAGCAGAAATCGTATA 1031
Query 780 AAGCTGGCATGGAAGAATCTGCCAAGAAATCACTTGCTTTGAAGAACGAGTTTGACCCCG 839
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 1032 AAGCTGGCATGGAAGAATCTGCCAAGAAATCACTTGCTTTGAAGAATGAATTTGACCCTG 1091
Query 840 AGTTTGCAAAAAAGCTTGAAGTGCAGTTGACTGAGACGTATAATGAGATCGATGAGCTGC 899
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1092 AATTTGCAAAGAAGCTTGAAGTGCAGTTGACTGAGACATATAATGAGATCGATGAACTGC 1151
Query 900 AGAAGCAAATGGAGACTGCGAAAGCATCAGATATGGATTCCGTTAATGGTGTGAGTCTGG 959
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||
Sbjct 1152 AGAAGCAAATGGAGACTGCGAAAGCATCGGATATAGATTCCGTAAATGGTGTGAGTTTGG 1211
Query 960 AGTTGAATGAAGCTAAGGGTTTACTCGAGAAACTTGTGGAAGAAGAGAAGTCTTTGCAAG 1019
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1212 AGTTGAATGAAGCTAAAGGTTTATTCGAGAAACTTGTGGAAGAAGAGAAGTCTTTGCAAG 1271
Query 1020 AGTTAGTGGAATCTCTTAAAGCAGAATTGAAGAATGTGAAGACAGAGCACGACGAAGTTG 1079
|||||||||||||||||||||||||||| ||||||||||||| ||||| || |||||||
Sbjct 1272 AGTTAGTGGAATCTCTTAAAGCAGAATTAAAGAATGTGAAGATGGAGCATGATGAAGTTG 1331
Query 1080 AAGCGAAGGAGGCTGAAATTGAATCTGTGGCTGGAGATCTTCATTTGAAGCTTAGCAGAA 1139
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1332 AAGCGAAGGAAGCTGAAATTGAATCTGTGGCTGGAGATCTTCATCTGAAGCTTAGCAGAA 1391
Query 1140 GTAAGAATGAGCTAGAAGAATGTGTTGCAGAGGAATCTAAAGCAAAGGCTGCTTTGGAAG 1199
|||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1392 GTAAGAGTGAGCTAGAACAATGTGTTACAGAGGAATCTAAAGCAAAGGCTGCTTTGGAAG 1451
Query 1200 ATATGATGTTAACCATCAATCAGATATCTTCTGAGACTGAAGCTGCTCGAC-ACGAAGCT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1452 ATATGATGTTAACCATCAATCAGATATCTTCTGAGACTGAAGCTGCTCGACGA-GAAGCT 1510
Query 1259 GAGGAAATGAGAAACAAAGCTGGGGAGTTAATGAAGGAAGCGGAAACTGCGCATCTGGCT 1318
|||| |||||||||||||||| |||||||||||||||||| ||| ||||||||||||||
Sbjct 1511 GAGGGAATGAGAAACAAAGCTAAGGAGTTAATGAAGGAAGCAGAATCTGCGCATCTGGCT 1570
Query 1319 CTTGAAGACTCAGAGCTACATCTAAGGGTCGCTTTAGATGAAGCCGAAGAAGCGAAAGCT 1378
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1571 CTTGAAGACTCAGAGCTACATCTAAGGGTCGCGTTAGATGAAGCCGAAGAAGCGAAAGCT 1630
Query 1379 GCGGAGACAAAGGCACTTGAACAAATAAAGTCAATGTCTGTGAAAACCAACGCTGCGCGT 1438
|| ||||||||||| |||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 1631 GCCGAGACAAAGGCGCTTGAACAGATAAAGTCAATGTCTGAAAAAACCAACGCTGCACGT 1690
Query 1439 AATTCGACTTCATCTGAGTCTGGATCTCAGAGCATCACACTGTCTCAAGAGGAGTTCAAA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1691 AATTCGACTTCATCTGAGTCTGGATCTCAGAGCATCACACTGTCTCAAGAGGAGTTCAAA 1750
Query 1499 TCACTGAGCAAGAGAGCTGAGGTATTCGATAAGCTAGCAGAAATGAAAGTGGCTGCTGCA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1751 TCACTGAGCAAGAGAGCTGAGGTATTCGATAAGCTAGCAGAAATGAAAGTGGCTGCTGCA 1810
Query 1559 TTGGCACAGGTGGAAGCAGTGAGAGCTAGCGAAAACGAGACATTGAAGAAGTTAGAGACA 1618
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1811 TTGGCTCAGGTGGAAGCAGTGAGAGCTAGCGAAAACGAGACACTGAAGAAGTTAGAGACA 1870
Query 1619 ACACAAGAGGAGATTAAGAAGCTAAAGAGTGCAACAGAAGAGGCACTGAAGAAAGCAGCT 1678
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1871 ACACAAGAAGAGATTAAGAAGCTAAAGACTGCAACAGAAGAGGCACTGAAGAAAGCAGCT 1930
Query 1679 ATGGCCGATGCTGCTAAGAAAGCTGTTGAAGGAGAACTCAGGAGATGGCGCGAAAGAGAT 1738
||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1931 ATGGCTGATGCTGCCAAGAAAGCGGTTGAAGGAGAACTCAGGAGATGGCGAGAAAGAGAT 1990
Query 1739 CAGAAGAAAGCAGAGGAAGCGGCAACAAGGATTCTAGCAGAAGCTGAGATGAAGATTGCC 1798
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 1991 CAGAAGAAAGCAGAGGAAGCGGCGACAAGGATTCTCGCAGAAGCTGAGATGAAGATGGCC 2050
Query 1799 AGTGAATCATCACCGCAACAACATTACAAAGCTCCGAAACAGAGACCTGTCAATAACAAA 1858
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2051 AGTGAATCATCACCGCAACAACATTACAAAGCTCCGAAACAGAAACCTGTCAATAACAAA 2110
Query 1859 CTGGAGAAGACAAAAACATCTGTGGTATCAAAGAAAGTGCTTTTGCCGAATCTAAGTGGA 1918
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2111 CTGGAGAAGACAAAAACATCTGTGGTATCAAAGAAAGTGCTTATGCCGAATCTAAGTGGA 2170
Query 1919 ATCTTCAATAGAAAGAAAAATCAAGTGGAATGGGGTTCTCCTTCATATCTCCCTGGAGAG 1978
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2171 ATCTTCAACAGAAAGAAGAATCAAGTGGAATGGGGTTCTCCTTCATATCTCCCTGGAGAG 2230
Query 1979 AAACCCTTTTGATGATTTCTTCTTTTTTCAAGAATTGAACTTTTTGTT-GTTGTGAACAA 2037
||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 2231 AAACCCTTTTGATGATTTCTTCTTTTT-CGAGAATTGAACTTTTTGTTTGTTGTGAACAA 2289
Query 2038 TCCAGAAAGTTGTGTGCTTTTTT-GCTAAAAGAAGGTTTGTGGTTTGAGATCAGAAGCAG 2096
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2290 TCCAGAAAGTTGTGTGCTTTTTTTGGTAAAAGAAGGTTTGTGGTTTGAGATCAGAAGCAG 2349
Query 2097 TTGCAGCTTTGGTCTAACGTGAGAAA-CTGGTTTATTGCTGTAAATTGGATCAAAGCTAT 2155
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2350 TTGCAGCTTTGGTCTAACGTGAGAAAACTGGTTG-TTGCTGTAAATTGGATCAAAGCTAT 2408
Query 2156 TTAGGTGGTGGTTTTATTTTGGCCCTTTCTTGTGATTGTGAATACTATTT 2205
||||||||| |||||| |||||| |||| || ||||||||||| ||||||
Sbjct 2409 TTAGGTGGTTGTTTTACTTTGGCTCTTTGTTATGATTGTGAATGCTATTT 2458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109386987555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5