BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495672
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55900.1 | Symbols: | Sucrase/ferredoxin-like family protei... 2176 0.0
AT4G26620.1 | Symbols: | Sucrase/ferredoxin-like family protei... 715 0.0
> AT5G55900.1 | Symbols: | Sucrase/ferredoxin-like family protein
| chr5:22637531-22639761 FORWARD LENGTH=1482
Length=1482
Score = 2176 bits (1178), Expect = 0.0
Identities = 1368/1459 (94%), Gaps = 16/1459 (1%)
Strand=Plus/Plus
Query 1 TCTGCTTCTTCTTCCTCTTCTC-AGAACTTTCAGTTTCGA--TCTCCTAAAAAGTTTGAA 57
||| |||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 6 TCTTCTTCTTCTTCCTCTTCTCAAAAACTTTCAGTTTCGATCTCTCCTAAAAAGTTTGAA 65
Query 58 CTTTTCGTCGAATCAAATGGGAAGCGGAAGATATTTAGACGACCCTTTAACATTTACTAG 117
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 66 CTTTCCGTCGAATCAAATGGGAAGCGGAAGATATCTAGACGACCCTTTAACATTTACTAG 125
Query 118 AAACCCACCATCCTCGTCTTCTCCAATCACCGAATCTAGCTTTCTCGGC-GAATCGATCT 176
||||||||| |||||||| ||||||||||||||||||||||||||| || ||||||||||
Sbjct 126 AAACCCACCTTCCTCGTCGTCTCCAATCACCGAATCTAGCTTTCTC-GCAGAATCGATCT 184
Query 177 CTCGCTCTGGAAGCTTTGAGAGTGAGAGCTTACGAGGAGGCGATGGTGATAGCTTTAGCG 236
|||||||||| ||||| ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 185 CTCGCTCTGGTAGCTTCGAGAGTGGGAGCTTACGAGGAGGCGATGGTGATTGCTTTAGCG 244
Query 237 ACG-CAGATTTCGCACTTGAGAAACTCGCTGGTACTGTACAGTTCTACGAGAGGCATGTC 295
||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 245 ACGTC-GATTTCGCACTTGATAAACTCGCTGGGACTGTACAGTTCTACGAGAGGCATGTC 303
Query 296 TTCTTGTGCTACAAAAAGCCCTCCGTTTGGCCCGCGAGGATCGAAGCGTCGGAGTTTGAT 355
||||||||||||||||| || ||||||||||| |||||||||||||| || |||||||||
Sbjct 304 TTCTTGTGCTACAAAAAACCATCCGTTTGGCCTGCGAGGATCGAAGCTTCTGAGTTTGAT 363
Query 356 CGGCTACCGAGGCTTCTCTCTTCCGTTATATCGGCCAGGAAGAGTAGTATGACGAAAGAG 415
||| |||||||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct 364 CGGTTACCGAGGCTTCTCTCCTCCGTTATATCGGCGAGGAAGAGTAGTATGAAGAAAGAG 423
Query 416 ACTCTACTCACAATATGTGAGGGACATGATGGAACAGAGACATCAAATGGGGATTTTCTG 475
||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 424 ACTTTACTCACAATATGTGAGGGACATGATGGTTCAGAGACATCAAATGGGGATGTTCTG 483
Query 476 ATATTTCCAGATATGATCAGATACAGAAGGCTGACTCATTTTGATGTCGACACATTTGTT 535
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 484 ATATTTCCAGATATGATCAGATACAGAAGGTTGACTCATTTTGATGTGGACACATTTGTT 543
Query 536 GAAGAGGTGCTTGTGAAGGATGTTGAGTGGTTGCCTGGAAATCCTGAATCT-TTAAGTGG 594
|| |||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |
Sbjct 544 GAGGAGGTGCTTGTGAAGGGTGTTGAGTGGTTGCCTGGAAATCCTGAATCTCTT-AGTAG 602
Query 595 TTCGTATGTCTTTGTATGTTGTCATGGTTCCCGAGACCGGCGATGTGGGGTTTGTGGACC 654
||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 603 TTCATATGTCTTTGTATGTTGTCATGGATCTCGAGACCGGCGATGTGGGGTTTGTGGACC 662
Query 655 TTCGCTGGTTAGTCGATTCAGAGAAGAAATTGAATTTTGTGGTCTTCGAGGTGAAGTTTC 714
||| || |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 663 TTCTCTAGTTAGTCGATTCAGAGAAGAAATTGACTCGTGTGGTCTTCGAGGTGAAGTTTC 722
Query 715 GGTCAGCCCTTGTTCTCACATTGGTGATCACAAATACACTGGAGATGTTATCATCTATGG 774
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 723 AGTCAGCCCTTGTTCTCACATTGGTGGTCACAAATACACTGGAGATGTTATCATCTATGG 782
Query 775 ATTAAACATCAACCAGAGAGTCACAGGACACTGGTATGGATGTGTGACTCTAGAGGATGT 834
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 ATTAAATATCAACCAGAGAGTCACAGGACACTGGTATGGATGTGTGACTCTAGAGGATGT 842
Query 835 AT-CTCTTTTGTTGGAGCAACACATTAACAAAGGCGAAATTGTAGACCGGCTTTGGAGGG 893
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 -TCCTCTTTTGTTGGAGCAACACATTAACAAAGGCGAAATTGTAGACCGGCTTTGGAGGG 901
Query 894 GTGAAATGGGTCTACCAGAAGAAGATCAGAAGAAAACTCAAGAACAAAGGTTACTATTAA 953
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 902 GTGAAATGGGTCTGCCAGAAGAAGATCAGAAGAAAACTCAAGAACAAAGGTTACAATTAA 961
Query 954 ACAGTGAAAAGATCAGCAACAGAGAGGTGACTCAAGAATCATTTAATAATGGTATTTGTT 1013
|||| |||||||||||||||||||||||||||||||||||| |||||||| |||| ||||
Sbjct 962 ACAGCGAAAAGATCAGCAACAGAGAGGTGACTCAAGAATCAGTTAATAATAGTATCTGTT 1021
Query 1014 GCCAGTCTCGAGCTGTCCCAGAGCTTAACGGTAGTTGTTGCCGACAAAATGGGAACTCCT 1073
||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||
Sbjct 1022 GCCAGTCTCGAGCTGTCCCAGAGCTGAACGGTAGTGGTTGCCAACAAAATGGGAACTCCT 1081
Query 1074 CTTACTGTCTGGAGGAGAATCACACAGAGAAAAATACCTCGGAAAGAGTAACCTCTGTaa 1133
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1082 CTTACTGTCTGGAGGAGATTCACACAGAGAAAAATACCTCGGAGAGAGTAACCTCTGTAA 1141
Query 1134 aaaaaGCATCTCTTCGGATAAGTAGCAGCGAAAATGGATCTTCTTGTGGATTCAAGGCTT 1193
|||| ||||||||||||||| | |||||||| |||||||||||| |||||||||||| ||
Sbjct 1142 AAAATGCATCTCTTCGGATAGGAAGCAGCGAGAATGGATCTTCTGGTGGATTCAAGGTTT 1201
Query 1194 GTGCTGCGATGTCAATGTGGTTGGAGAGTTGGGAGAAAGAGGATACATATGCTGCTTTAG 1253
|||| | |||||||||||||||||||| |||||||| ||| |||||||||||||||||||
Sbjct 1202 GTGCGGTGATGTCAATGTGGTTGGAGACTTGGGAGAGAGAAGATACATATGCTGCTTTAG 1261
Query 1254 CCGTTGCTTGTGCTGCTGCATCTGTGGCTATTGCTTATAACTGCTATAAACAATTGAAAT 1313
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CTGTTGCTTGTGCTGCTGCATCTGTGGCTATTGCTTATAACTGCTATAAACAATTGAAAT 1321
Query 1314 GAAGCAATGTGTTTT-TATGTCTAGCTTCTATCCAATGGTAATTATCTCAGTATTTAGAC 1372
||||| ||||||||| ||| | |||||||||| ||||||||||||||||||| ||||||
Sbjct 1322 GAAGCTATGTGTTTTATAT-T-TAGCTTCTATGCAATGGTAATTATCTCAGTCTTTAGAT 1379
Query 1373 TAGATT-TTTCCTCTTCGTCTGTATAGAGTTAGAAGAGGGTTTTAACTTTTCTGTAAGAA 1431
||| || ||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 1380 TAG-TTGTTTCCTCTTCGTCTGTACAGAGTTAGAAGAGGGTTTTAACTCTTAAGTAAGAA 1438
Query 1432 CGGTTTGTTGATAATATAT 1450
| | |||||||||| ||||
Sbjct 1439 CTGCTTGTTGATAACATAT 1457
> AT4G26620.1 | Symbols: | Sucrase/ferredoxin-like family protein
| chr4:13427411-13429964 REVERSE LENGTH=1607
Length=1607
Score = 715 bits (387), Expect = 0.0
Identities = 791/978 (81%), Gaps = 59/978 (6%)
Strand=Plus/Plus
Query 8 CTTCTTCCTCTTCTCAGAACTTTCAGTTTCGATCTCCTAAAAAGTTT-GAACTTTTCGTC 66
||||||| || |||| | | ||||||||||||||| | ||||||| ||||| | |||
Sbjct 21 CTTCTTCTTCGTCTCCGTAGTTTCAGTTTCGATCT-GT--AAAGTTTCAAACTTGTGGTC 77
Query 67 GAA---TCAAATGGGAAGCGGAAGATATTTAGACGACCCTTTAACATTTACTAGAAACCC 123
||| | |||||||||| |||||| || ||||||||||||| | || || || || ||
Sbjct 78 GAATTTTTAAATGGGAAGTGGAAGAGATAGAGACGACCCTTTATCCTTCACCAGCAATCC 137
Query 124 A-CCATCCTCGTCTTCTCCAATCAC-----C-GA--ATCT----AGCTTTCTCGGCGAAT 170
| | | | |||| |||||| |||| | || |||| | |||||||||||||
Sbjct 138 ATCTA-CGGCGTCGTCTCCAGTCACTGTATCTGACTATCTCGACAACTTTCTCGGCGAAC 196
Query 171 CGATC-TCTCGCTCTGGAAGCTTTGAGAGTGAGAGCTTA--C-GAGGAGGCGATGGTGAT 226
| | | |||||||| || || ||| | || ||||||||| | | ||||||| ||| ||
Sbjct 197 CCA-CTTCTCGCTCCGGTAGTTTTCAAAGCGAGAGCTTACTCGGTGGAGGCGGTGGAGAA 255
Query 227 AGCTTTAGCGACGC--A-----GATT---TCG--C--ACTT--GA---G-A-AACTCGCT 265
||| | | |||||| | |||| ||| | | || || | | |||| |||
Sbjct 256 AGCATCAACGACGCTGATTTTGGATTCGCTCGTCCTGATTTCCGATCGGAACAACTAGCT 315
Query 266 GGTACTGTACAGTTCTACGAGAGGCATGTCTTCTTGTGCTACAAAAAGCCCTCCGTTTGG 325
|| || |||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 316 GGAACCGTACAGTTTTACGAGAGGCATGTCTTCTTGTGCTACAAAAAGCCATCTGTTTGG 375
Query 326 CCCGCGAGGATCGAAGC-GTCGGAGTTTGATCGGCTACCGAGGCTTCTCTCTTCCGTTAT 384
||||| |||||||| || | | ||||| ||||| | || ||||| |||||| | | | |
Sbjct 376 CCCGCAAGGATCGAGGCTG-CTGAGTTCGATCGATTGCCTAGGCTACTCTCTGCTGCTGT 434
Query 385 ATCGGCCAGGAAGAGTAGTATGACGAAAGAGACTCTACTCACAATATGTGAGGGACATGA 444
||||||||| ||| |||| |||| ||| ||||||| |||||||||||||||||| |||||
Sbjct 435 ATCGGCCAGAAAGGGTAGCATGAAGAAGGAGACTCGACTCACAATATGTGAGGGGCATGA 494
Query 445 TGGAACAGAGACATCAAATGGGGATTTTCTGATATTTCCAGATATGATCAGATACAGAAG 504
||||||||||||||| ||||| ||| | || || ||||| ||||||||||||||||| ||
Sbjct 495 TGGAACAGAGACATCCAATGGTGATGTACTTATTTTTCCTGATATGATCAGATACAGGAG 554
Query 505 GCTGACTCATTTTGATGTCGACACATTTGTTGAAGAGGTGCTTGTGAAGGATGTTGAGTG 564
||||||| |||||||| || || ||||| |||||||||||||||||||||| ||| ||
Sbjct 555 ATTGACTCACTTTGATGTGGAGACCTTTGTGGAAGAGGTGCTTGTGAAGGATGGTGAATG 614
Query 565 GTTGCCTGGAAATCCTGAAT--CTTTAAGTGGTTCGTATGTCTTTGTATGTTGTCATGGT 622
| |||||||||||||||||| || ||| | | | |||||||||||||||| |||||
Sbjct 615 GCTGCCTGGAAATCCTGAATTGCTGAAAG-GCT-CATATGTCTTTGTATGTTCCCATGGA 672
Query 623 TCCCGAGACCGGCGATGTGGGGTTTGTGGACCTTCGCTGGTTAGTCGATTCAGAGAAGAA 682
||||||||||||||||||||||||||||| || ||||| |||||| ||||||||||||||
Sbjct 673 TCCCGAGACCGGCGATGTGGGGTTTGTGGGCCGTCGCTAGTTAGTAGATTCAGAGAAGAA 732
Query 683 ATTGAATTTTGTGGTCTTCGAGGTGAAGTTTCGGTCAGCCCTTGTTCTCACATTGGTGAT 742
|||| || |||||||| |||| |||| || | ||||| ||||||||||| |||| |
Sbjct 733 CTTGAGTTCCATGGTCTTCAAGGTAAAGTGTCAATTAGCCCATGTTCTCACATAGGTGGT 792
Query 743 CACAAATACACTGGAGA-TGTTATCATCTATGGATTAAACATCAACCAGAGA-GTCACAG 800
||||||||| |||| || |||||||||||| ||| |||||||||| || || |||||||
Sbjct 793 CACAAATACGCTGG-GAATGTTATCATCTACCGATCAAACATCAAC-AGGGAAGTCACAG 850
Query 801 GACACTGGTATGGATGTGTGACTCTAGAGGATGTATCTCTT-TTGTTGGAGCAACACATT 859
||||||||||||| | |||||| | ||| |||||| || || || |||||||| |||||
Sbjct 851 GACACTGGTATGGGTATGTGACCCCAGAAGATGTACCTATTCTT-TTGGAGCAGCACATC 909
Query 860 AACAAAGGCGAAATTGTAGACCGGCTTTGGAGGGGTGAAATGGGTCTACCAGAAGAAGAT 919
||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 910 AACAAAGGCGAGATTGTAGACCGGCTATGGAGGGGTGAAATGGGTCTATCAGAAGAAGAT 969
Query 920 CAGAAGAAAACTCAAGAA 937
||||||||||||||||||
Sbjct 970 CAGAAGAAAACTCAAGAA 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71485576080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5