BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495677
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55950.1 | Symbols: | Nucleotide/sugar transporter family p... 2098 0.0
> AT5G55950.1 | Symbols: | Nucleotide/sugar transporter family
protein | chr5:22658112-22660434 REVERSE LENGTH=1677
Length=1677
Score = 2098 bits (1136), Expect = 0.0
Identities = 1391/1508 (92%), Gaps = 41/1508 (3%)
Strand=Plus/Plus
Query 1 GAAACAATTATACCATGACATTAAAATCCAGattttattcattcattttcgtatt-tttg 59
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||
Sbjct 1 GAAACAATTATACCATGACATTAAAATCCAGATTTTTTTCAGTCATTTTCGTATTATTT- 59
Query 60 gtttaaaagtaaagttttttcCTCCATTAAAACGGAAAATGTGATCTGG-GTTTTTCATC 118
|||||||||||||| |||||| ||||| |||| |||||||||||||||| |||||| |
Sbjct 60 GTTTAAAAGTAAAG-TTTTTCTTCCATCAAAATGGAAAATGTGATCTGGTTTTTTTCTTA 118
Query 119 GAAAG-GATTAAAACAATC-G-GAGA-GA--G--AA----TTA-------CAA-TT--T- 155
| ||| |||||||||||| | |||| || | || ||| || || |
Sbjct 119 G-AAGATATTAAAACAATCGGAGAGAGGATTGCAAATTTTTTATTTTTGTTAATTTGCTG 177
Query 156 T-TGATGGGTCTGGTTGATTCTTTGTTTGGAAAAGATGCAAGGAAATTTCTCAAACGGAA 214
| ||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||
Sbjct 178 TGTGATGGGTCTGGTTGATTCTTTGTTAGGAAAAGATGCAAGAAAATTTCTCAAAAGGAA 237
Query 215 AGATAGTGATGCTGCAGAAGCAGGTCGAGCTTTGGAAGAACTCAGAAGTTCTTTATACAA 274
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 238 AGATAGTGATGCTGCAGAAGCAGGACGAGCTTTGGAAGAACTCAGAAGTTCTTTGTACAA 297
Query 275 TGAGCTTAAAACATCAGAAGGAGCTAAACGGCAACAACAGAGATTTTGTGGCCCTGTTGT 334
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 298 TGAGCTTAAAACATCAGAAGGAGCTAAAAGGCAACAACAGAGATTTTGTGGCCCTGTTGT 357
Query 335 TGCAATGTCCTTCAATTTCTTTGTTGCTGTTGGAATCATCCTTGCCAATAAATTAGTGAT 394
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGCAATGTCCTTTAATTTCGTTGTTGCTGTTGGAATCATCCTTGCCAATAAATTAGTGAT 417
Query 395 GGGAAGAGTTGGATTCAATTTTCCAATCTTTTTAACATTGATTCACTATACTGTTGCTTG 454
||||||||||||||||||||| ||||||||| ||||||||||||| ||||| || |||||
Sbjct 418 GGGAAGAGTTGGATTCAATTTCCCAATCTTTCTAACATTGATTCATTATACCGTGGCTTG 477
Query 455 GATTCTTCTAGCTTTCTTCAAGTCTCTCTCTTTGCTTCCAATGTCTCCTCCATCAAAGAC 514
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GATTCTTTTAGCTTTCTTCAAGTCTCTCTCTTTGCTTCCAATGTCTCCTCCATCAAAGAC 537
Query 515 TACACCTTTCTCATCTCTCTTCTCTCTTGGAGCTGTCATGGCCTTTGCTTCTGGACTCGC 574
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AACACCTTTCTCATCTCTTTTCTCTCTTGGAGCTGTCATGGCCTTTGCTTCTGGACTCGC 597
Query 575 TAATACTAGTCTCAAACACAACAGCGTTGGATTCTATCAGATGGCTAAGATCGCTGTGAC 634
|||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct 598 TAATACCAGTCTCAAACACAATAGCGTTGGATTCTATCAAATGGCTAAGATCGCAGTTAC 657
Query 635 ACCAACGATTGTTCTTGCAGAGTTTGTTCTCTTCAAGAAAACCATTTCTTCCACCAAGGT 694
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 658 ACCAACGATTGTTCTTGCCGAGTTTGTTCTCTTCAAGAAAACCATTTCTTCCACAAAGGT 717
Query 695 CATGGCATTAGCTGTAGTATCTCTAGGCGTGGCAATCGCGACAGTGACAGATCTAGAATT 754
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 718 CATGGCATTAGCTGTAGTATCTCTAGGTGTGGCAATCGCGACAGTGACGGATCTAGAATT 777
Query 755 CAATTTGTTCGGCGCATTGGTTGCTGTTGCTTGGATTATCCCAAGTGCCATCAATAAAAT 814
|||||||| || ||||| |||||||||||||||||||| ||||||||||| || |||||
Sbjct 778 TAATTTGTTTGGTGCATTAGTTGCTGTTGCTTGGATTATTCCAAGTGCCATTAACAAAAT 837
Query 815 ACTCTGGTCTAATCTTCAGCAACAAGCTAATTGGACTGCCCTAGCATTGATGTGGAAGAC 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ACTCTGGTCTAATCTTCAGCAACAAGCTAATTGGACTGCCCTAGCATTGATGTGGAAGAC 897
Query 875 AACACCGTTTACTGTCTTCTTCTTATTGGCGCTTATGCCATGGCTTGACCCACCTGGAGT 934
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 898 AACACCGTTTACTGTCTTCTTCTTGTTGGCTCTCATGCCATGGCTTGACCCACCTGGAGT 957
Query 935 TTTGCTGTTCAAATGGGATTTAGGTAACTCTTCAGCAATCCTCGTCTCAGCTCTTCTCGG 994
|||||| ||||||||||||||| ||||||||| ||||||||| |||| |||||||||||
Sbjct 958 TTTGCTTTTCAAATGGGATTTAACTAACTCTTCCGCAATCCTCATCTCGGCTCTTCTCGG 1017
Query 995 CTTTCTTCTCCAATGGTCTGGTGCACTCGCTCTCGGGGCAACCTCGGCAACATCTCATGT 1054
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1018 CTTTCTTCTCCAATGGTCTGGTGCACTCGCTCTCGGGGCAACATCAGCAACATCTCATGT 1077
Query 1055 AGTATTAGGGCAATTCAAGACATGTGTGATTTTGCTTGGAGGTTACGTTATCTTCGGCTC 1114
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1078 AGTATTAGGGCAATTCAAGACATGTGTGATCTTGCTTGGAGGTTACGTTATCTTCGGCTC 1137
Query 1115 CGATCCC-GGTATCATCAGCATCTGTGGAGCTGTGGCGGCTCTTGCCGGCATGTCTGTCT 1173
|| ||| ||| ||||||||||||| || ||| | || ||||||| |||||||||||||
Sbjct 1138 TGA-CCCTGGTTTCATCAGCATCTGCGGCGCTATCGCAGCTCTTGGAGGCATGTCTGTCT 1196
Query 1174 ACACGTGGCTCAATCTTCCGGGGAAATCCATCGATCACGTTTCAAATAAGCAGCTTCCAA 1233
|||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||
Sbjct 1197 ACACGTGGCTCAATCTTCCGGGGAAATCCATCGATCACATGTCAAACAAGCAGCTGCCAA 1256
Query 1234 AGCAAAACGTTAACGTTTCAAAACCTAAAGCCGAGGCTGACGACGGAGGAGGAGAGACCG 1293
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGCAAAACGTCACCGTTTCAAAACCTAAAGCCGAGGCTGACGACGGAGGAGGAGAGACCG 1316
Query 1294 GAGTAACAGTAGTTTCTGTTGACCCACTTCTCTCCAAGACGATAACTGCAAATATCGTAT 1353
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GAGTAACCGTAGTTTCTGTTGACCCACTTCTCTCCAAGACGATAACTGCAAATATCGTAT 1376
Query 1354 AGTTTTATAACTTAATTAGAT-GCCAAAGAGAAAAAA--TGAGTTT-ACttttttttttC 1409
||||||| || || ||||||| ||||||||||||||| ||||||| ||||||| || |
Sbjct 1377 AGTTTTACAATTTGATTAGATTGCCAAAGAGAAAAAAAATGAGTTTTACTTTTTCTT--C 1434
Query 1410 CTTCAGGTTT-AGTTTGTAAAATTGGTTCAATTTTGATATCAAATTAGTTTAGTAAAAG- 1467
||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |
Sbjct 1435 -TTCAGGTTTTAGTTTGTAAAATTGGTTCAGTTTTGATATCAAATTAGTGTAGTAAA-GT 1492
Query 1468 ATACTAAT 1475
||||||||
Sbjct 1493 ATACTAAT 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72740589705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5