BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495679
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55990.1 | Symbols: CBL2, ATCBL2 | calcineurin B-like protei... 743 0.0
> AT5G55990.1 | Symbols: CBL2, ATCBL2 | calcineurin B-like protein
2 | chr5:22671452-22673855 FORWARD LENGTH=1144
Length=1144
Score = 743 bits (402), Expect = 0.0
Identities = 433/448 (97%), Gaps = 2/448 (0%)
Strand=Plus/Plus
Query 235 AATAAAAAAGAGAGCTTGTTTGCAGATCGGGTTTTCGATTTCTTTGATACAAAACACAAT 294
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 425 AATAAAAAAGAGAGTTTGTTTGCAGATCGGGTTTTCGATTTGTTTGATACAAAGCACAAT 484
Query 295 GGAATACTCGGGTTTGAGGAGTTTGCCCGTGCTCTCTCCGTGTTTCACCCAAATGCACCT 354
|||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |||
Sbjct 485 GGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCT 544
Query 355 ATAGATGACAAAATCCACTTTTCATTTCAGCTATATGATCTTAAACAGCAAGGGTTCATC 414
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 545 ATAGATGACAAAATTCACTTTTCATTTCAGCTATATGATCTTAAACAGCAAGGGTTTATC 604
Query 415 GAACGGCAAGAGGTGAAACAAATGGTTGTCGCTACGCTTGCTGAATCCGGAATGAATTTG 474
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 605 GAACGGCAAGAGGTGAAACAAATGGTTGTCGCTACGCTTGCTGAATCTGGAATGAATTTG 664
Query 475 AAGGATACTGTCATTGAGGATATAATCGACAAGACGTTTGAGGAAGCAGACACAAAACAC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 AAGGATACTGTCATTGAGGATATAATCGACAAGACGTTTGAGGAAGCAGACACAAAACAC 724
Query 535 GATGGAAAGATCGATAAGGAAGAGTGGAGAAGCCTTGTTCTTAGACA-CCTCAGCCTTCT 593
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 725 GATGGAAAGATCGATAAGGAAGAGTGGAGAAGCCTTGTTCTTAGACATCC-CAGCCTTCT 783
Query 594 GAAGAACATGACTCTTCAGTATCTCAAGGATATCACGACTACGTTTCCAAGCTTTGTTTT 653
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 784 GAAGAACATGACTCTTCAATATCTCAAGGATATCACGACTACGTTTCCAAGCTTTGTGTT 843
Query 654 CCATTCTCAGGTTGAAGATACCTGAAAA 681
||||||||||||||||||||||||||||
Sbjct 844 CCATTCTCAGGTTGAAGATACCTGAAAA 871
Score = 259 bits (140), Expect = 3e-68
Identities = 158/166 (95%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 1 AGGCATGGAGAGTTTTGATTTGCTGCTTAAGATCGTTATATCATGTCGCAGTGCGTTGAC 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 150 AGGCATGGAGAGTTTTGATTTGCTGCTTAAGA----TATATCATGTCGCAGTGCGTTGAC 205
Query 61 GGTTTCAAGCATTTATGCACCTCGGTTTTAGGGTGTTTTGATCTTGATTTGTATAAACAA 120
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 206 GGTATCAAGCATTTATGCACCTCTGTTTTAGGGTGTTTTGATCTTGATTTGTATAAACAA 265
Query 121 TCCGGTGGTCTTGGAGATCCTGAATTGCTTGCAAGAGACACTGTTT 166
|| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 266 TCTGGTGGCCTTGGAGATCCTGAATTGCTTGCAAGAGACACTGTTT 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45060029859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5