BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495680
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55970.1 | Symbols: | RING/U-box superfamily protein | chr5... 1772 0.0
> AT5G55970.1 | Symbols: | RING/U-box superfamily protein | chr5:22667906-22669545
FORWARD LENGTH=1378
Length=1378
Score = 1772 bits (959), Expect = 0.0
Identities = 1047/1090 (96%), Gaps = 3/1090 (0%)
Strand=Plus/Plus
Query 486 AAGGTCTAAAATCTTGAAGGATTCAAAAATTTCCGATGAATACACGTTATTCCGTTCAGC 545
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 79 AAGGTCTAAAATCTTGAAGGATTCAAAAATTTCCGATGAATACACGTTATTCCAATCAGC 138
Query 546 CGGAGTTATCTTCCAATAATATCTCGATCACTATTTCATCGTCTGCTTCGTTAAGCTCCT 605
||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 139 CGGAGTTATCTTCTAGTAATATCACGATCACTATTTCATCGTCTGCTTTGTTAAGCTCCT 198
Query 606 CACCGCGAGGCGAAAACAGTCATGTTGCTGATGGTAATGCTCAAGAGAGGTCTCCATCTT 665
||||||||||||| |||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 199 CACCGCGAGGCGATAACAGTCATGTTGCTGCTGCTAATGGTCAAGAGAGGTCTCCATCTT 258
Query 666 CCTTTTACATAAGGTTGGCTATGAAGGTATCTAGAGCTAGATGGTTTATCTTCTTGAGAA 725
| ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 259 CGTTTTATATAAGGCTGGCTATGAAGGTATCTAGAGCTAGATGGTTCATCTTCTTGAGAA 318
Query 726 GAGTGTTTCACTATCAGAACGGTTCAAGATCCGACCTTGGCTCCAATCCTTTCAATTCTA 785
||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 319 GAGTGTTTCACTACCAGAACGGTTCAAGATCTGACCTTGGGTCTAATCCTTTCAATTCTA 378
Query 786 GCACTTGGATGATGTCTGAGCTCATTGCTCTGCTTGTTCAGCTCACTGTGATAACATTCA 845
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 379 GCACTTGGATGATGTCTGAGCTCATTGCTCTACTTGTTCAGCTCACTGTGATAACATTCA 438
Query 846 CACTAGCTATCTCCAAAGAAGAGAGACCTATTTGGCCAGTGAGGCTATGGATCACAGGAT 905
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 439 CTCTAGCTATCTCCAAAGAAGAGAGACCAATTTGGCCAGTGAGGCTATGGATCACAGGAT 498
Query 906 ACGATGTGGGATGTCTTCTAAATCTCATGCTGTTATATGGTCGGTATCGTCAACTAGACA 965
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 499 ACGATGTGGGATGTCTTTTGAATCTCATGCTGTTATATGGTCGGTATCGTCAACTAGACA 558
Query 966 TTTACCAAGGAAATGGGTTTGTCCTCGGCGATGTTGAGCAGCAACAGAGAGGCAGAGAAG 1025
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 559 TTAACCAAGGAAATGGGTTTGTCCTTGGCGATGTTGAGCAGCAACAGAGAGGCAGAGAAG 618
Query 1026 AAACAAGGTCCTCTCACTTGATGAACAAATGCAGAACGTCGCTAGAGCTTTTCTTTGCAA 1085
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 619 AAACTAGGTCCTCTCACTTGATGAACAAATGCAGAACGTCGCTAGAGCTTTTCTTTGCGA 678
Query 1086 TTTGGTTTGTGATTGGGAATGTTTGGGTTTTCGATTCTAGGTTCGGTTCTTTCCACCATG 1145
|||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 679 TTTGGTTTGTGATTGGAAATGTTTGGGTGTTCGATTCTAGGTTTGGTTCTTTCCACCATG 738
Query 1146 CTCCCAAGCTTCACGTCCTCTGCGtctctcttctatcttggaacgctatctgctattcct 1205
|||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 739 CTCCCAAGCTTCACGTTCTCTGCGTCTCTCTTTTAGCTTGGAACGCTATCTGCTATTCCT 798
Query 1206 ttccctttcttctcttcctcttcctctGTTGCCTTGTTCCTCTCATAAGTAGCCTCCTTG 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TTCCCTTTCTTCTCTTCCTCTTCCTCTGTTGCCTTGTTCCTCTCATAAGTAGCCTCCTTG 858
Query 1266 GATATAACATGAACATGGGATCCTCAGACAGAGCAGCATCAGATGACCAAATCTCTAGTC 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 GATATAACATGAACATGGGATCCTCAGACAGAGCAGCATCAGATGACCAAATCTCTAGTC 918
Query 1326 TCCCTAGCTGGAAATTCAAACGAATCGACGAAAATGCTTCTGATTCAGATTCAGATTCAG 1385
||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||
Sbjct 919 TCCCTAGCTGGAAATTCAAACGAATCGACGATAGTGCTTCTGATTCTGATTCAGATTCAG 978
Query 1386 CTACTGCAACCGATGATCCAGAGTGTTGTATATGTTTGGCGAAGTATAAAGACAAAGAAG 1445
|||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 979 CTACTGTAACTGATGATCCAGAGTGTTGTATATGTTTGGCAAAGTATAAAGACAAAGAAG 1038
Query 1446 AAGTAAGGAAGCTTCCATGT-CAACATAAGTTTCACTCAAAGTGTGTAGATCAATGGCTT 1504
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1039 AAGTAAGGAAGCTTCCATGTTCA-CATAAGTTTCACTCAAAGTGTGTAGATCAATGGCTT 1097
Query 1505 CGTATCATCTCTTGTTGTCCTCTCTGCAAACAAGATCTTCCAAGATGACAAAGCAAAAAC 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1098 CGTATCATCTCTTGTTGTCCTCTCTGCAAACAAGATCTTCCAAGATGACAAAGCAAATAC 1157
Query 1565 CCCTAAAAGC 1574
|| |||||||
Sbjct 1158 CC-TAAAAGC 1166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78112048020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5