BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495689
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56020.1 | Symbols: | Got1/Sft2-like vescicle transport pro... 1269 0.0
AT4G26550.1 | Symbols: | Got1/Sft2-like vescicle transport pro... 640 0.0
> AT5G56020.1 | Symbols: | Got1/Sft2-like vescicle transport protein
family | chr5:22684405-22686369 FORWARD LENGTH=1037
Length=1037
Score = 1269 bits (687), Expect = 0.0
Identities = 761/797 (95%), Gaps = 4/797 (1%)
Strand=Plus/Plus
Query 1 CCGATTTTCTTAGCTCCGACGTAAACCACCGATCGCCGATATTCAGC--T-TTTAGAAAT 57
||||||| ||||||||||||||||||||| ||||| || |||||||| | ||| | | |
Sbjct 97 CCGATTTCCTTAGCTCCGACGTAAACCACTGATCGTCGGTATTCAGCTATATTTTG-ATT 155
Query 58 TCCCAGTTCCAAAAATTCCCAACAAAATGGAGAAAATGGCGAAAGGTTGGTTTTCGATGA 117
|| ||| |||||||||||||||| |||||||||||||||| ||||| |||||| ||||||
Sbjct 156 TCTCAGCTCCAAAAATTCCCAACGAAATGGAGAAAATGGCCAAAGGATGGTTTCCGATGA 215
Query 118 GCGGCACTAGTAGCAGCGGAGATCAGCAGCAGCAACCGCTGCAAACAGGAGGAACGTCTC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 GCGGCACTAGTAGCAGCGGAGATCAGCAGCAGCAACCGCTGCAAACAGGAGGAACGTCTC 275
Query 178 TGCTAGCTGATTGGAATTCCTACGCAGCTTCGAGAGATTTTGAAGAAGACCCCGGAGCTT 237
||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |||
Sbjct 276 TGCTAGCTGATTGGAATTCTTACGCAGCATCGAGAGATTTTGAAGAAGACACCGGAACTT 335
Query 238 TAGGCTTCGATATCGAATCCGCCGTTAGATCTGCCAACGACACTGTCTCCGGAACCTTTA 297
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 336 TAGGCTTCGATATCGAATCCGCCGTTAGATCTGCCAACGACACTGTTTCCGGCACCTTTA 395
Query 298 ATGTTGTTTCGAAAGGAGTTAGAGATAACCTGCAGTCTGCAACAAGTAGTATGCCTTCAG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 ATGTTGTTTCGAAAGGAGTTAGAGATAACCTGCAGTCTGCAACAAGTAGTATGCCTTCAG 455
Query 358 GAAAAGCGTTGATGTATTTCGGTTTACTTCTAGCAAGTGGTGTTTTCTTCATCTTCATTG 417
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 456 GAAAAGCTTTGATGTATTTCGGTTTACTTCTAGCAAGTGGTGTATTCTTCATCTTCATTG 515
Query 418 CCTTCACCATGTTTCTTCCAGTCATGGTGCTTATGCCACAGAAGTTTGCAATTTGTTTTA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 CCTTCACCATGTTTCTTCCAGTCATGGTGCTTATGCCACAGAAGTTTGCAATTTGTTTTA 575
Query 478 CCCTTGGATGTGGATTTATCATCGGATCTTTCTTCGCTCTTCGTGGCCCGCAAAATCAAC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 CCCTTGGATGTGGATTTATCATCGGATCTTTCTTCGCTCTTCGTGGCCCGCAAAATCAAC 635
Query 538 TCGCTCACATGTCATCGGCAGAGAGGCTTCCTCTAACTTTAGGTTTCATAGCCACCATGG 597
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 636 TCGCTCACATGTCATCGGCAGAGAGGCTTCCACTAACTTTAGGTTTCATTGCCACCATGG 695
Query 598 TTGGCACCATATATGTCTCGATGGTGCTCCATAGTTACATTCTCTCTGTGATTTTCTCTG 657
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 696 TTGGCACCATATATGTCTCGATGGTGCTCCATAGCTACATTCTCTCTGTGATTTTCTCTG 755
Query 658 CATTACAGGTTGTTGCACTGGCTTACTACTGTGTATCCTACTTCCCTGGTGGATCATCGG 717
||||||||||| |||||||||| ||||||||| |||| || |||||||||||||||||||
Sbjct 756 CATTACAGGTTATTGCACTGGCGTACTACTGTATATCATATTTCCCTGGTGGATCATCGG 815
Query 718 GAATGAAGTTCCTCAGTTCTACTCTTACCTCCTCTGTCTTCAGAATGTTTGGGAGATGAG 777
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 816 GAATGAAGTTCCTCAGTTCTACTCTTACCTCCTCTGTCTTCCGAATGTTTGGGAGATGAG 875
Query 778 CTTTCGCCTCGATCTAT 794
||||||| | || ||||
Sbjct 876 CTTTCGCTTTGACCTAT 892
> AT4G26550.1 | Symbols: | Got1/Sft2-like vescicle transport protein
family | chr4:13402515-13404345 REVERSE LENGTH=1055
Length=1055
Score = 640 bits (346), Expect = 0.0
Identities = 536/626 (86%), Gaps = 19/626 (3%)
Strand=Plus/Plus
Query 172 CGTCTCTGCTAGCTGATTGGAATTCCTACGCAGCTTCGAGAGATTTTGAAG-AAGACCCC 230
|||||||||| || ||||||||||| |||||||| || |||||||| || | ||| | |
Sbjct 202 CGTCTCTGCTTGCGGATTGGAATTCTTACGCAGCCTCTAGAGATTTCGAGGAAAG-CGGC 260
Query 231 GG-AGCTTTAGGCTTCGATATCGAATCCGCCGTTAGATCTGCCAACGACACTGTCTCCGG 289
|| ||| || ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 261 GGAAGC-TTCGGCTTTGATATCGAATCCGCCGTTAGATCTGCCAATGACACTGTTTCGGG 319
Query 290 AACCTTTAATGTTGTTTCGAAAGGAGTTAGAG--A-T--A---A-CCTGCAGTCTGCAAC 340
||||| | ||| ||||| ||||||||||||| | | | | | ||||||| |||||
Sbjct 320 CACCTTCAGTGTGGTTTCAAAAGGAGTTAGAGATATTCCAGGGAGCTTGCAGTCAGCAAC 379
Query 341 AAGTAGTATGCCTTCAGGAAAAGCGTTGATGTATTTCGGTTTACTTCTAGCAAGTGGTGT 400
||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct 380 AAGTAGTATGCCTTCAGGAAAAGCGCTCATGTATTTCGGTTTACTTCTCGCAAGTGGTGT 439
Query 401 TTTCTTCATCTTCATTGCCTTCACCATGTTTCTTCCAGTCATGGTGCTTATGCCACAGAA 460
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 440 TTTCTTCATCTTCATTGCCTTCACAATGTTTCTTCCAGTCATGGTGCTTATGCCACAGAA 499
Query 461 GTTTGCAATTTGTTTTACCCTTGGATGTGGATTTATCATCGGATCTTTCTTCGCTCTTCG 520
||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 500 ATTTGCCATTTGTTTCACCCTTGGATGTGGATTCATCATTGGATCCTTCTTCGCACTTCG 559
Query 521 TGGCCCGCAAAATCAACTCGCTCACATGTCATCGGCAGAGAGGCTTCCT-CTAACTTTAG 579
|||||| ||||||| ||||| |||||||| ||| |||||||||||| | ||| |||
Sbjct 560 TGGCCCTAAAAATCAGCTCGCACACATGTCTTCGATGGAGAGGCTTCCTTC-AACCCTAG 618
Query 580 GTTTCATAGCCACCATGGTTGGCACCATATATGTCTCGATGGTGCTCCATAGTTACATTC 639
||||||| || ||||||||||| |||||||| || || ||||| ||||| || |||||||
Sbjct 619 GTTTCATTGCTACCATGGTTGGTACCATATACGTATCAATGGTTCTCCACAGCTACATTC 678
Query 640 TCTCTGTGATTTTCTCTGCATTACAGGTTGTTGCACTGGCTTACTACTGTGTATCCTACT 699
|||| ||| | ||||| | ||||||||| |||| |||| |||||||||| |||||||||
Sbjct 679 TCTCGGTGCTCTTCTCAGTGTTACAGGTTCTTGCGCTGGTTTACTACTGTATATCCTACT 738
Query 700 TCCCTGGTGGATCATCGGGAATGAAGTTCCTCAGTTCTACTCTTACCTCCTCTGT-CTTC 758
|||||||||||||||| || |||| ||||||||||||| |||| ||||| |||| ||
Sbjct 739 TCCCTGGTGGATCATCAGGCATGAGGTTCCTCAGTTCTGCTCTCACCTCATCTGCGCTA- 797
Query 759 AGAATGTTT-GGGAGATGAGCTTTCG 783
||| | ||| ||||||| ||||||||
Sbjct 798 AGAGT-TTTCGGGAGATAAGCTTTCG 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39082166366
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5