BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495692
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56050.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1604 0.0
> AT5G56050.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; BEST Arabidopsis thaliana protein match is: Late
embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein
family (TAIR:AT4G26490.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa -
736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:22700962-22702116 REVERSE
LENGTH=1155
Length=1155
Score = 1604 bits (868), Expect = 0.0
Identities = 1068/1159 (92%), Gaps = 35/1159 (3%)
Strand=Plus/Plus
Query 1 TTCTCACACCACCAAGAAACTCAAAAAACAGAAACTTCAAGAGTTTCCTACTTCCTCTTC 60
||||||||||||||||| |||||||| ||||||||||||||||||| | | | |||||
Sbjct 17 TTCTCACACCACCAAGATACTCAAAAGACAGAAACTTCAAGAGTTT-C--C-T--TCTTC 70
Query 61 TACTTCTTCAACTATCAAGACATAAGAACCCATGTC-AAATCTTCCTCCACCGCCACAGT 119
| ||||||| |||||||||||||||||||||||| |||| || ||||||||||||| |
Sbjct 71 --C-TCTTCAATTATCAAGACATAAGAACCCATGTCAAAAT-TTTCTCCACCGCCACAAT 126
Query 120 CGCAACCGCAGCCGCAACCGCCCGAAACTCCTCCATGGGAAACGCCATCTTCTAAATGGT 179
| ||| | || || ||||||||||| || |||||||||||||| |||||||||||||
Sbjct 127 CTCAA-C-CA----CAGCCGCCCGAAACACCACCATGGGAAACGCCGTCTTCTAAATGGT 180
Query 180 ATTCTCCAATATACACACCATGGAGAACAACTCCAAGAAGCACACAATCAACTCCAA-GT 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 ATTCTCCAATATACACGCCATGGAGAACAACTCCAAGAAGCACACAATCAACTCCAACG- 239
Query 239 ACAACACCAATAGCTCTTACCGAAGTGATTGTGTCTAAATCACCTTTGTCTCATCTCAAG 298
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 240 ACTACACCAATAGCTCTTACCGAAGTGATTGTGTCTAAATCACCTTTGTCTAATCAGAAG 299
Query 299 AGCCCTACAACTCCTAAACTAGACGGTGTCCAAGCACAGT-CTTTAAACGAGACAATGGT 357
|||||| ||||||||||||||||| || | |||| || | ||||| ||||||| |||||
Sbjct 300 AGCCCTGCAACTCCTAAACTAGACAGTATGGAAGCGCA-TCCTTTACACGAGACGATGGT 358
Query 358 TCTCCTGCGGCTACGAACAAGCAGGACCAATCCATGGATTTGGTGTGGTGCAGCTTTGTG 417
|||| | | |||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 TCTCTTACAGCTAAGAACAAGCCGGACCAATCCATGGATTTGGTGTGGTGCAGCTTTGTG 418
Query 418 TTTTATCTTCAGCATACTTCTTATAGTCTTTGGGATTGCTACTTTGATTCTCTATTTCGC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 TTTTATCTTCAGCATACTTCTTATAGTCTTTGGGATTGCTACTTTGATTCTCTATCTCGC 478
Query 478 CGTCAGGCCAAGAACCCCTGTTTTCGACATCTCTAATGCAAAGCTCAACACTATCCTCTT 537
||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 479 CGTCAAACCAAGAACCCCTGTTTTTGACATCTCTAATGCAAAGCTCAACACCATCCTCTT 538
Query 538 CGAGTCACCGGTTTATTTCAACGGTGATATGTTGTTGCAGTTGAATTTCACCAATCCAAA 597
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 539 TGAGTCACCGGTTTATTTCAACGGTGATATGTTGTTGCAGTTAAATTTCACCAATCCTAA 598
Query 598 CAAGAAACTAAATGTGAGGTTTGAGAATCTTATGGTCGAGCTCTGGTTTTCCGACACAAA 657
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 599 CAAGAAACTAAATGTGAGGTTTGAGAATCTTATGGTAGAGCTCTGGTTTGCCGACACAAA 658
Query 658 GATCGCCACACAAGGTGTCTTGCCGTTTTCACAAAGAAATGGTAAGACTAGGCTAGAACC 717
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 659 GATCGCCACACAAGGTGTCTTGCCGTTTTCGCAAAGAAACGGCAAGACTAGGCTAGAACC 718
Query 718 GATCCGTTTGATTTCAAATTTGGTCTTCTTGCCTGTAAATCATATACTTGAGCTCAGAAG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GATCCGTTTGATTTCAAATTTGGTCTTCTTGCCTGTAAATCATATACTTGAGCTCAGAAG 778
Query 778 ACAAGTGACGAGCAATAGGATAGCTTATGAAATCAGAAGTAACTTCAAAGTCAAAGCTAT 837
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 779 ACAAGTGACGAGCAATAGGATAGCTTATGAAATCAGAAGTAACTTCAGAGTCAAAGCTAT 838
Query 838 TTTTGGGATTATTCATTATTCTTATATGCTTCACGGGAGTTGTCAGCTTCAATTGAGCAG 897
||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 839 TTTTGGGATGATTCATTATTCTTATATGCTACACGGGATTTGTCAGCTTCAATTGAGCAG 898
Query 898 TCCACCAGCCGGTGGCTTAGTTTATCGGAACTGCACTACAAAAAGATGGTGAAGAACAGA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TCCACCAGCCGGTGGCTTAGTTTATCGGAACTGCACTACAAAAAGATGGTGAAGAACAGA 958
Query 958 GGTT-ATCTTCAAAGTCTGTAGCTTTGCCAT-GTGTTCTTAAAGCATAGATCTTTCCTTT 1015
| || ||||||||||||| || |||| || | |||||||| ||||||||||||||| |||
Sbjct 959 G-TTCATCTTCAAAGTCTCTATCTTTACCCTTGTGTTCTTCAAGCATAGATCTTTC-TTT 1016
Query 1016 T-CCCACTCCCAAGATGTAAAAA--CGAATCAAGATTCAATAGA-T----GCAAGAACCA 1067
| ||||||| ||||||||||||| ||||||||||||||| ||| | |||||| |||
Sbjct 1017 TGCCCACTCACAAGATGTAAAAAAACGAATCAAGATTCAACAGACTCTATGCAAGAGCCA 1076
Query 1068 AGATAAGATTTT-GTTGTATATTGTTAAAACAGATCTAGTAAGGTTGGTGTAATTAA-TG 1125
|||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 1077 AGATAAGATTTTTGTTGTATATTGTTAAGACATATCTAGTAAGGTTGGTGTAATTAAATG 1136
Query 1126 ATTCAAAGAGATAATTCTT 1144
| |||||||||||||||||
Sbjct 1137 AGTCAAAGAGATAATTCTT 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56124209310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5