BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495693
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56075.1 | Symbols: | Domain of unknown function (DUF2431) ... 870 0.0
AT5G56060.1 | Symbols: | Domain of unknown function (DUF2431) ... 145 7e-34
> AT5G56075.1 | Symbols: | Domain of unknown function (DUF2431)
| chr5:22709756-22710809 FORWARD LENGTH=771
Length=771
Score = 870 bits (471), Expect = 0.0
Identities = 556/595 (93%), Gaps = 14/595 (2%)
Strand=Plus/Plus
Query 132 ACTAAAAGGTTAAGACATTACACTAACAAACAAAAAATACTTTTGGTCGGAGAAGGAGAC 191
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 190 ACTAAAAGGTTAAGACATTACACTAACAAACAAAAAATTCTTTTGGTCGGAGAAGGAGAC 249
Query 192 TTCTCCTTTTCTCTATCTTTAGCTAGAGCCTTTGGTTCTGCAACAAACCTCACCGCGACC 251
|||||||||||||| ||| ||||||||||||||||||||||| | ||||||||||| |||
Sbjct 250 TTCTCCTTTTCTCTGTCTCTAGCTAGAGCCTTTGGTTCTGCATCTAACCTCACCGCAACC 309
Query 252 TCTCTCGATACTCAAGGGGAGCTAGAGC-GTAAGTTTAAGAATGGGAAGTCGAACGTAGA 310
|||||||||||||||||||||||||||| | |||||||||||||||||| |||| |||||
Sbjct 310 TCTCTCGATACTCAAGGGGAGCTAGAGCAG-AAGTTTAAGAATGGGAAGGCGAATGTAGA 368
Query 311 AGAGCTGGAAAGACTCGGGTGCAGCGTGGTATATGGAGTTAACGTCCACTCCATGACCAC 370
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 369 AGAGCTGGAAAGACTCGGGTGCAGCGTGGTCTATGGAGTTAACGTGCACTCCATGATCAC 428
Query 371 AAAGCCTAGCGTTGGTGGTTCCGCGATATATGACAGAGTCATCTTCAATTTCCCTCACGC 430
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |
Sbjct 429 AAAACCTAGCGTTGGTGGTTCTGCGATATATGACAGAGTCATCTTCAATTTTCCT-A--C 485
Query 431 AGGGAGGCATCAAGAGCTTGTAAGAGGGTTTATGAAGAGTGCAAGAGTGATGGTGAAAGA 490
|||| ||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 486 ------GCAT---GAGCTTGTACGAGGGTTTATGAAGAGTGCAAGAGTGTTGGTGAAAGA 536
Query 491 TGAAGACAAGGGAGGAGAGATTCATGTGATTCATAAGACAGAATATCCATTTAGCGAGTG 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGAAGACAAGGGAGGAGAGATTCATGTGATTCATAAGACAGAATATCCATTTAGCGAGTG 596
Query 551 GAAGCTAAAGACTTTGGGTGAGAAAGAAGGTTTAGATTTGATCCGTGAGATCGAGTTTTG 610
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 597 GAAGCTCAAGACTTTGGGTGAGAAAGAAGGTTTAGATTTGATCCGTGAGGTCGAGTTTTG 656
Query 611 CTTAAGTCAATATCCTGGTTATTCCAACAAGAGAGGAAGTGGAGGTTATAGTGATTCTAG 670
||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 657 CTTAAGTCATTATCCTGGTTATTTCAACAAGAGAGGAAGTGGAGGTTATAGTGACTCTAG 716
Query 671 CTTCCCTGTCGGAAAATCTTCTACTTTCATGTTTACAAAACAGTTCTTTTACTAA 725
||||||||| || ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 717 CTTCCCTGTTGGGAAATCTTCTACTTTCATGTTTACGAAACAGTTCTTTTATTAA 771
Score = 89.8 bits (48), Expect = 3e-17
Identities = 71/81 (88%), Gaps = 6/81 (7%)
Strand=Plus/Plus
Query 1 TTTCGAATTACATAAATACCCACAAAGTTCGAAGAGCCAAATGAATATAGCTAGTAAACA 60
||||||||||||||||| |||||||||||||||||| |||| || || |||||||
Sbjct 26 TTTCGAATTACATAAATGCCCACAAAGTTCGAAGAGTCAAAC---TA---CTTGTAAACA 79
Query 61 AACAAAACCAAACATTTAATA 81
|||||||||||||||||||||
Sbjct 80 AACAAAACCAAACATTTAATA 100
> AT5G56060.1 | Symbols: | Domain of unknown function (DUF2431)
| chr5:22704008-22704892 FORWARD LENGTH=663
Length=663
Score = 145 bits (78), Expect = 7e-34
Identities = 170/214 (79%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 156 AACAAACAAAAAATACTTTTGGTCGGAGAAGGAGACTTCTCCTTTTCTCTATCTTTAGCT 215
||||| |||||||||||||||||||||||||||||||| || |||||| | ||| ||||
Sbjct 40 AACAAGCAAAAAATACTTTTGGTCGGAGAAGGAGACTTTTCGTTTTCTTTGTCTCTAGCC 99
Query 216 AGAGCCTTTGGTTCTGCAACAAACCTCACCGCGACCTCTCTCGATACTCAAGGGGAGCTA 275
|||| ||||||||||| |||||| |||| ||||||||||| || |||| || |||||||
Sbjct 100 AGAGTTTTTGGTTCTGCCACAAACATCACTGCGACCTCTCTTGACACTCGAGAGGAGCTA 159
Query 276 GAGCGTAAGTTTAA-GAATGGGAA-GTCGAACGTAGAAGAGCTGGAAA-GACTCGGGTGC 332
| | ||||| | || ||| || | | || || |||| | |||| | | ||||||
Sbjct 160 GGGATTAAGTACACTGA-TGGAAAAG-CAAATGTGGAAGGGTTGGAGTTGTTT-GGGTGC 216
Query 333 AGC-GTGGTATATGGAGTTAACGTCCACTCCATG 365
| | ||||| | || ||||||||||||||||||
Sbjct 217 A-CAGTGGTCCACGGTGTTAACGTCCACTCCATG 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35163902900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5