BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495698
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56120.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1587 0.0
> AT5G56120.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G12870.1);
Has 77 Blast hits to 75 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:22721373-22722613
FORWARD LENGTH=1165
Length=1165
Score = 1587 bits (859), Expect = 0.0
Identities = 1010/1082 (93%), Gaps = 14/1082 (1%)
Strand=Plus/Plus
Query 1 TCAATCTTCATCTTACTCTCTAATTGCTTTCCAT-TTCTGATCTCTGTTTCTTCATAAAG 59
|||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 32 TCAATCTTCATCTTACTCTCTAATTGCTTTCC-TATTCCGATCTCTGTTTCTTCATAAAG 90
Query 60 TCTCAATC-tttttttCTCTATGGCCGGAACTAAAGATTCGCATGTAGTGGAGATTCCGG 118
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 91 TCTCAATCTTTTTTTTCTCTATGGCCGGAACTAAAGATTCTCATGTAGTGGAGATTCCAG 150
Query 119 TAGATGAAGAGCATAAAGA-A-A-GACAACAACAACAGTTGGTTGCGGTCTCGAATCCGG 175
||||||||||||||||||| | | ||||||||||||||||||||||||||| |||||||
Sbjct 151 TAGATGAAGAGCATAAAGAGAGACAACAACAACAACAGTTGGTTGCGGTCTCAAATCCGG 210
Query 176 GAATGGGAATACTCAAAGTGATTCAGCAGCATCCGTTGTCTGAAATCTCAGAGAGTCCAG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 GAATGGGAATACTCAAAGTGATTCAGCAGCATCCGTTGTCTGAAATCTCAGAGAGTCCAG 270
Query 236 GACATTTGTTGCTTTTGAAGCTATGGCAGAGAGAAGAAGATTTGTTCTGTCGTCGTGTCC 295
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 271 GACATTTGTTGCTTTTGAAGTTATGGCAAAGAGAAGAAGATTTGTTCTGTCGTCGTGTTC 330
Query 296 TACTTAAAGAATCGAGGCTAGAGTCAATCAAAAGAGAGATCTTTCAGCTTTGCTGTTTCT 355
| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 331 TTCTTAAAGAATCAAGACTAGAGTCAATCAAAAGAGAGATCTTTCAGCTTTGTTGTTTCT 390
Query 356 TCCTCGTCTTCCACGGGTTTTTCTTCACACTTGTCTACTCTTCTTCTTGTTCTGATGACG 415
|||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 391 TCCTAGTCTTCCATGGGTTCTTCTTCACACTTGTCTACTCTTCTTCTTGTTCTGATGATG 450
Query 416 ATGAAGTAGTGAAAAGCAATGCGGTTTGCAAGAAATGGTGGATACCTTCTGCGGTGTCAC 475
||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 451 CTGACGTGGTGAAAAGTAATGCGGTTTGCAAGAAATGGTGGATACCTTCTGCAGTGTCAT 510
Query 476 TAGCTACTTCATTGGTTTTGGTGTTTCTGGTTCAGGTTAAGCTGTTTGTGTTCTGGAAAG 535
||||||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||
Sbjct 511 TAGCTACTTCATTGGTTCTGGTGTTTCTTGTTCAAGCTAAGCTGTTTGTGTTCTGGAAAG 570
Query 536 TTTACAGAGGAGTTCATAGGGAGAGGAATGGTAACAGAACGCTTACACGGTGTGTTTTGG 595
|||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 571 TTTACAGAGGTGTTAATAGGGAGAGGAATGATAATAGAACGCTTACACGGTGTGTTTTGG 630
Query 596 AGTTGAGGATGAAAGGGTCGAGCTTTGATTTGTCGAAAGAGCCCATGAGTGGGAAGAGGA 655
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 631 AGTTGAGGATGAAAGGGTCGAGCTTTGATTTGTCGAAAGAGCCGATGAGTGGGAAGAGGA 690
Query 656 TGAAGAGTTCAAGCGTTGAGATCAAGTGGAAACCTGTTACTTGGTTCTCTCAGTATTTGA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TGAAGAGTTCAAGCGTTGAGATCAAGTGGAAACCTGTTACTTGGTTCTCTCAGTATTTGA 750
Query 716 TCACCATTGTTCTTCTTTGCTTTGCAGGGTTGTTCTTCCCGGTCTCAAAGTTCATACTCT 775
| || |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 751 TAACTATTGTTCTTCTTTGCTCTGCAGGGTTGTTCTTCCCGGTCTCAAAGTTCATCCTCT 810
Query 776 GCGGATTTTGACAAACTCTTGCTATTCATTGTTTGTTTGGACTCTGCATCCTTTCTTCAG 835
|||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||
Sbjct 811 GCGGATTTTGACAAACTCTTCCTATTCACTGTTTGTTCGGACTCTGCATTCTTTCTTCAA 870
Query 836 CCTCCATTGTGGGGATGAAGCTTTTGGTCCGATC--A---TTGGCCTCTGTTCTAGCTTC 890
||| |||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 871 CCTTCATTGTGGGGATGATGCTTTTGGTCCGATCTTACCATTGGCCTCTGTTCTAGCTTT 930
Query 891 GAGAGAGTAGCTGTCAAATCTCCCAGACTGAAGAATCGCCGGAGGGCCTAATAACAACCT 950
|||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 931 GAGAGAGTAGCTGTCAAATCTCCCAGACTGAAGATTCGCCGGAGGGAATAAGAACAACCT 990
Query 951 GTAACTTTTAGCAGTACTCATACATAGTAGAGAATTGATGTAACTCAGAATCAGAATTCT 1010
|||||||||||||||||||| |||||||||| ||||||||||| || | || ||||||||
Sbjct 991 GTAACTTTTAGCAGTACTCACACATAGTAGAAAATTGATGTAATTCGGGATTAGAATTCT 1050
Query 1011 GATCTTGATATTATTTAATTTCATTATTCGTTTATAATAAAGAACACAT-CTTGTATAGT 1069
||||||||| ||||| ||||||||| |||||| |||||||| |||| | ||||||||||
Sbjct 1051 GATCTTGATCTTATT-AATTTCATTCTTCGTTAATAATAAACAACAT-TGCTTGTATAGT 1108
Query 1070 AA 1071
||
Sbjct 1109 AA 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5