BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495700
Length=1418
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56140.1 | Symbols: | RNA-binding KH domain-containing prot... 2060 0.0
AT4G26480.1 | Symbols: | RNA-binding KH domain-containing prot... 904 0.0
> AT5G56140.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:22725369-22728343 FORWARD LENGTH=1452
Length=1452
Score = 2060 bits (1115), Expect = 0.0
Identities = 1344/1447 (93%), Gaps = 46/1447 (3%)
Strand=Plus/Plus
Query 1 AGCTTTGGTTCTGACTCCGCCG---CTGCTTCTTCTTCTAATCTCCGACAGATTTGCTCT 57
||||||||||||| |||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 16 AGCTTTGGTTCTGCCTCCGCCGCTTCTTCTTCTTCTTCTAATCTCCGACAGATTTACTCT 75
Query 58 GATTCCTTGTGAATATTTTCTTCGAGATGATGATGATGTCGTCTC-T--tggtggtggtg 114
|||| | || || ||||||||||||||||||||||||| | | |||||||||||
Sbjct 76 GATT-C---TG----TTGTCTTCGAGATGATGATGATGTCGTCGCTTGGTGGTGGTGGTG 127
Query 115 gtggaggaggaggaa---gtgg-gg--ttggtggtggcggaggagggaggtTTATGACGT 168
||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||
Sbjct 128 GTGGAGGAGGAGGAAGTGGTGGTGGTATTGGTGGTGGCGGCGGAGGGAGGTTTATGACGT 187
Query 169 ATTCGTCGTCTCTTTCGGTTCCTCCTTCTGCTCCTCAGTCTCCTAATTACTCTGGTGGTC 228
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 188 ATTCGTCGTCTCTTTCGGTGCCTCCTTCTGCTCCTCAGTCTCCTAATTACTCCGGTGGTC 247
Query 229 TCCGATCACAGTCTTCTGTCTTCGCTGAGCAAGAGAAGTATCTTTCAGAGTTACTTGCAG 288
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 248 TCCGATCACAGTCTTCTGTCTTCGTTGAGCAAGAGAAGTATCTTTCAGAGTTACTTGCAG 307
Query 289 AGCGTCATAAGCTTACTCCATTCCTACCTGTGCTTCCACACGCATATCGCCTACTAAACC 348
||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||
Sbjct 308 AGCGTCATAAGCTTACTCCATTCCTGCCTGTGCTTCCACATGCATTTCGGCTACTAAACC 367
Query 349 AAG-----TTG-AT-AAACACACTACTGCTAAGAGAGA-CCTAAtttttttAAGTCAGAG 400
||| ||| | ||| ||| |||| | |||| | || | |||||||||||||
Sbjct 368 AAGAAATTTTGCGTGTAAC-CAC-ACTG-TTGGAGA-ATGCT-ACAGTTTTAAGTCAGAG 422
Query 401 TGGGCTTGACCACCCTGGCCCTCTGGCTTCAGGAGGGATATTTCAGAATGCAAGAGCTGA 460
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 423 TGGGCTTGACCACCCTAGCCCTCTGGCTTCTGGAGGGATATTTCAGAATGCAAGAGCTGA 482
Query 461 CATGAACGGATGGGCCTCACAGTTTCCATCAGAAAGATCTGTTCCATCATCTCCGGGACC 520
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 483 CATGAATGGATGGGCCTCCCAGTTTCCATCAGAAAGATCTGTTCCATCATCTCCGGGACC 542
Query 521 AAATTGGCTTAACTCACCTGGTAGTTCGTCCGGTCTCATCGCCAAGCGTACAATCAGGGT 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AAATTGGCTTAACTCACCTGGTAGTTCGTCCGGTCTCATCGCCAAGCGTACAATCAGGGT 602
Query 581 TGATATTCCAGTCGACAATTATCCGAATTTCAATTTTGTTGGTCGCCTCCTGGGTCCTAG 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 CGATATTCCAGTCGACAATTATCCGAATTTCAATTTTGTTGGTCGCCTCCTGGGTCCTAG 662
Query 641 AGGAAACTCCCTGAAGCGAGTTGAAGCAAGTACTGATTGCCGTGTTCTTATAAGGGGAAG 700
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 663 AGGAAACTCCCTGAAGCGAGTTGAAGCAAGTACTGATTGCCGTGTTCTTATAAGAGGAAG 722
Query 701 AGGCAGTATAAAAGATCCAATTAAGGAGGAAATGATGAGAGGAAAACCAGGATACGAGCA 760
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 723 AGGAAGTATAAAAGATCCAATTAAGGAGGAAATGATGAGAGGAAAACCGGGATACGAGCA 782
Query 761 CCTAAATGAACCACTTCATATCTTAGTTGAAGCAGAATTACCGATTGAAATAGTCGATGC 820
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 783 CCTAAATGAACCACTTCATATCTTAGTGGAAGCAGAATTACCGATTGAAATAGTCGATGC 842
Query 821 ACGTCTCATGCAAGCTCGCGAAATACTTGACGATCTTCTTACTCCTATGGAGGAAACCCA 880
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 843 ACGGCTCATGCAAGCTCGGGAAATACTTGACGATCTTCTTACTCCTATGGAGGAAACCCA 902
Query 881 TGATTTGTACAAGAAACAACAGCTGCGCGAGCTAGCATTACTCAATGGAACTCTTCGCGA 940
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 903 TGATATGTACAAGAAACAACAGCTGCGCGAGCTAGCATTGCTCAATGGAACTCTTCGTGA 962
Query 941 AGAAGGATCTCCAATGTCCGGCTCTGTTTCTCCTTACAATAGCCTTGGTATGAAGAGAGC 1000
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGAAGGATCTCCAATGTCCGGTTCTGTTTCTCCTTACAATAGCCTTGGTATGAAGAGAGC 1022
Query 1001 CAAAACAAGAGAAGGGTAAAAATCATCGAACATTTTGGTTGTGATCATAAAGCAATATGA 1060
|||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 1023 CAAAACAAGAGAAGGGTAAAAACCATCGAACAGTTTGGCTGTGATCATAAAGCAATATGA 1082
Query 1061 AACCGATCCAAAATTCGACACAGAAAGGCCATACCACTCTTGACGACACGGTACTGTCTC 1120
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1083 AACCGATCCAAAAGTCGACACAAAAAGGCCATACCACTCTTGACGACACGGTACTGTCTC 1142
Query 1121 TTGTCCCTGGGATAGAATTGTTGTATATATGATTT--GAAATGTGTTTGTCTGTCTATTT 1178
|||||| |||| ||||| ||||||||||||||||| |||||||||||||| |||||| |
Sbjct 1143 TTGTCCTTGGGGTAGAAATGTTGTATATATGATTTATGAAATGTGTTTGTCAGTCTATGT 1202
Query 1179 ATCATTGTCCCGGAGAGAGATCAGATGACAAAAATTTCAA-GGAAATACAAGAGCTGATT 1237
||||||||||||||||||||||||||||||||| || ||| ||||| ||||||||||||
Sbjct 1203 ATCATTGTCCCGGAGAGAGATCAGATGACAAAA-TTGCAACGGAAACACAAGAGCTGATG 1261
Query 1238 AGTCTCTGTCTCTCTCCGAGACTTTGGGTTTGTTTT-----ATGTTTCTCTGTCTGGAAA 1292
|||||||||||||||||||||||||| |||||||| |||||| | ||||||||||
Sbjct 1262 AGTCTCTGTCTCTCTCCGAGACTTTGATTTTGTTTTTGTTTATGTTTTTATGTCTGGAAA 1321
Query 1293 GTTGGGTTCCAACAGTTTTCTTTTATAAGCTCtttt-tttGTTTATTATTTTAGCAAAAA 1351
||||||||||||||||||||||||| | | | |||| ||| ||| || ||||||||||||
Sbjct 1322 GTTGGGTTCCAACAGTTTTCTTTTA-A-GTT-TTTTGTTTATTTGTTGTTTTAGCAAAAA 1378
Query 1352 GAAAACATTAAATCATGATGATGGTTTGTGTCTGGTATTGGTAATGATAATAATCATAAT 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GAAAACATTAAATCATGATGATGGTTTGTGTCTGGTATTGGTAATGATAATAATCATAAT 1438
Query 1412 ATGTTTT 1418
|||||||
Sbjct 1439 ATGTTTT 1445
> AT4G26480.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:13372422-13375963 REVERSE LENGTH=1560
Length=1560
Score = 904 bits (489), Expect = 0.0
Identities = 792/937 (85%), Gaps = 26/937 (3%)
Strand=Plus/Plus
Query 83 GATGATGATGATGTCGTCTCTtggtggtggtggtggaggaggaggaagtggggttggtgg 142
||||||||||||| |||| ||||||||||||| |||||| || || || | || ||||||
Sbjct 170 GATGATGATGATGACGTCACTTGGTGGTGGTGCTGGAGGCGGCGG-AG-GAGG-TGGTGG 226
Query 143 tggcggaggagggaggtTTATGACGTATTCGTCGTCTCTTTCGGTTCCTCCTTCTGCTCC 202
| | || || ||||| ||| |||||||| || || |||| || || ||||| || |||||
Sbjct 227 TAGTGGTGGTGGGAGATTTGTGACGTATCCGCCGCCTCTATCTGTGCCTCCGTCGGCTCC 286
Query 203 TCAGTCTCCTAA-TTACTCTGGTGGTCTCCGATCACAGTCTTCTGTCTTCGCTGAGCAAG 261
|||||| ||||| || |||||||||||||||||||||| ||||| || ||| ||||||||
Sbjct 287 TCAGTCACCTAACTT-CTCTGGTGGTCTCCGATCACAGCCTTCTTTCCTCGTTGAGCAAG 345
Query 262 AGAAGTATCTTTCAGAGTTACTTGCAGAGCGTCATAAGCTTACTCCATTCCTACCTGTGC 321
||||||||||||| |||||||||||||||||||| |||||||||||||| | |||||||
Sbjct 346 AGAAGTATCTTTCTGAGTTACTTGCAGAGCGTCACAAGCTTACTCCATTTTTGCCTGTGC 405
Query 322 TTCCACACGCATATCGCCTAC-TAAACCAAG-----TTG-AT-AAACACACTACTGCTAA 373
||||||| | | || || | | ||||||| ||| | ||| ||| ||| |
Sbjct 406 TTCCACATGTTTGCCGGCT-CATGAACCAAGAAATTTTGCGTGTAAC-CAC-GCTG-T-T 460
Query 374 GAGAGACCTAAtttttttAAGTCAGAGTGGGCTTGACCACCCTGGCCCTCTGGCTTCAGG 433
| ||| || | |||||||||||| || |||| |||||| ||||||||||||| ||
Sbjct 461 G-GAG----AA-TGCCTTAAGTCAGAGTAGGTTTGATCACCCTAGCCCTCTGGCTTCTGG 514
Query 434 AGGGATATTTCAGAATGCAAGAGCTGACATGAACGGATGGGCCTCACAGTTTCCATCAGA 493
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 515 AGGGATATTTCAGAATTCAAGAGCTGACATGAACGGATGGGCCTCACAATTTCCATCAGA 574
Query 494 AAGATCTGTTCCATCATCTCCGGGACCAAATTGGCTTAACTCACCTGGTAGTTCGTCCGG 553
|||||| ||| ||||||| || | |||||||||||||||||| |||||||| ||||||||
Sbjct 575 AAGATCGGTTTCATCATCCCCAGCACCAAATTGGCTTAACTCTCCTGGTAGCTCGTCCGG 634
Query 554 TCTCATCGCCAAGCGTACAATCAGGGTTGATATTCCAGTCGACAATTATCCGAATTTCAA 613
|||||||| |||||| ||||| ||||| ||||||||||||||||| || || || | |||
Sbjct 635 TCTCATCGTCAAGCGAACAATAAGGGTGGATATTCCAGTCGACAAATACCCAAACTACAA 694
Query 614 TTTTGTTGGTCGCCTCCTGGGTCCTAGAGGAAACTCCCTGAAGCGAGTTGAAGCAAGTAC 673
|||||| ||||| ||| |||||||||||||||||||||| || ||||||||||| |||||
Sbjct 695 TTTTGTCGGTCGTCTCTTGGGTCCTAGAGGAAACTCCCTCAAACGAGTTGAAGCGAGTAC 754
Query 674 TGATTGCCGTGTTCTTATAAGGGGAAGAGGCAGTATAAAAGATCCAATTAAGGAGGAAAT 733
|||||| |||||||| |||||||| |||||||| || |||||||| ||||||||||| ||
Sbjct 755 TGATTGTCGTGTTCTAATAAGGGGTAGAGGCAGCATTAAAGATCCGATTAAGGAGGATAT 814
Query 734 GATGAGAGGAAAACCAGGATACGAGCACCTAAATGAACCACTTCATATCTTAGTTGAAGC 793
||||||||| ||||| || || |||||||| ||||||||||| || |||||||| || ||
Sbjct 815 GATGAGAGGTAAACCTGGTTATGAGCACCTCAATGAACCACTCCACATCTTAGTCGAGGC 874
Query 794 AGAATTACCGATTGAAATAGTCGATGCACGTCTCATGCAAGCTCGCGAAATACTTGACGA 853
||||||||| ||||||||||| || ||||||||||||||||| || |||||||| |||||
Sbjct 875 AGAATTACCCATTGAAATAGTGGACGCACGTCTCATGCAAGCCCGTGAAATACTCGACGA 934
Query 854 TCTTCTTACTCCTATGGAGGAAACCCATGATTTGTACAAGAAACAACAGCTGCGCGAGCT 913
||| |||||||| ||||||||||||||||||| ||||||||||||||||| || || |
Sbjct 935 TCTACTTACTCCCGTGGAGGAAACCCATGATTTCTACAAGAAACAACAGCTACGGGAATT 994
Query 914 AGCA-TTACTCAATGGAACTCTTCGCGAAGAAGGATCTCCAATGTCCGGCTCTGTTTCTC 972
|| || ||||| || | |||||| |||||||||||||||||||| || || | || |
Sbjct 995 GGCCCTT-CTCAACGGCAGTCTTCGAGAAGAAGGATCTCCAATGTCTGGTTCCATCTCAC 1053
Query 973 CTTACAATAGCCTTGGTATGAAGAGAGCCAAAACAAG 1009
||||||||||||| || ||||||||||| || |||||
Sbjct 1054 CTTACAATAGCCTCGGCATGAAGAGAGCTAAGACAAG 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69879158640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5