BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495701
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56150.1 | Symbols: UBC30 | ubiquitin-conjugating enzyme 30 ... 898 0.0
AT5G41700.4 | Symbols: UBC8, ATUBC8 | ubiquitin conjugating enz... 265 5e-70
> AT5G56150.1 | Symbols: UBC30 | ubiquitin-conjugating enzyme 30
| chr5:22729176-22731187 FORWARD LENGTH=761
Length=761
Score = 898 bits (486), Expect = 0.0
Identities = 560/596 (94%), Gaps = 4/596 (1%)
Strand=Plus/Plus
Query 1 ATCTTCAAAACAACACCTTGAGATTTCCGAAG---ATCAAATCCAAAACCCTAGAATCCG 57
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1 ATCTTCAAAACAACCCCTTGAGATTTCCGAAGATCATCAAATCCAAAACCCTAGAAACCG 60
Query 58 CACAAAAGCTAGCAGCAGCGAGGACTATTCAATGGCGTCGAAAAGAATTAACAAGGAGCT 117
|||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 61 AACAAAAGCTAGCAGAAGCTAGGACTATTCAATGGCGTCGAAAAGAATTAACAAAGAGCT 120
Query 118 TAGGGACCTGCAAAGAGATCCTCCTGTGTCATGCAGTGCCGGTCCTATGGGAGATGATAT 177
||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||||||||
Sbjct 121 TAGGGACTTGCAAAGAGATCCTCCTGTGTCCTGCAGTGCAGGTCCTACGGGAGATGATAT 180
Query 178 GTTCCATTGGCAAGCAACTATCATGGGTCCAACAGATAGCCCGTTTGCCGGAGGTGTGTT 237
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 GTTCCAATGGCAAGCAACTATCATGGGTCCAGCAGATAGCCCGTTTGCCGGAGGTGTGTT 240
Query 238 TCTCGTTACCATTCACTTCCCTCCTGACTACCCATTCAAACCTCCAAAGGTTTCCTTCCG 297
||| ||||||||||||||||| || || ||||| ||||| || ||||||||| |||||||
Sbjct 241 TCTTGTTACCATTCACTTCCCACCAGATTACCCTTTCAAGCCACCAAAGGTTGCCTTCCG 300
Query 298 CACCAAGGTTTATCACCCAAATATCAACAGTAATGGAAGTATCTGTCTTGACATTCTCAA 357
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 301 GACCAAGGTTTATCACCCAAACATCAACAGTAATGGAAGTATCTGTCTTGACATTCTGAA 360
Query 358 AGAGCAGTGGAGCCCTGCACTTACCGTATCCAAGGTTCTTCTGTCGATATGCTCATTGCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAGCAGTGGAGCCCTGCACTTACCGTATCCAAGGTTCTTCTGTCGATATGCTCATTGCT 420
Query 418 GACGGATCCAAACCCTGATGATCCTTTGGTTCCTGAAATAGCTCACATCTACAAGACAGA 477
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 GACGGATCCAAACCCTGACGATCCTTTGGTTCCTGAAATAGCGCACATCTACAAGACAGA 480
Query 478 CCGAGTCAAGTACGAGTCTATGGCTCAATCCTGGACCCAGAAGTATGCAATGGGATGATA 537
|||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 481 CCGAGTCAAGTACGAGTCCACAGCTCAATCCTGGACTCAGAAGTATGCAATGGGATGATA 540
Query 538 ACTAGCAATAATACCCAC-ACCAGTACATTGCGCATTAAACATGAGAAATAAGAAA 592
|| ||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 541 ACAAGCAATAATACCCACCACCAGTACATTGCGTATTAAACAGGAGAAATAAGAAA 596
Score = 156 bits (84), Expect = 3e-37
Identities = 123/139 (88%), Gaps = 13/139 (9%)
Strand=Plus/Plus
Query 593 TTTGGCTACTTTTGCCTATTAG--tttttttttt--ttATATCTTGAAGCCGTGTGTTGG 648
||||||||||||||| |||||| |||||||||| |||||||||||||| |||||||
Sbjct 626 TTTGGCTACTTTTGCTTATTAGTTTTTTTTTTTTAATTATATCTTGAAGCTGTGTGTT-- 683
Query 649 GTGTGTGTGTACATGAGCTTTATTATGCCTTATTTGAAACATTGAGATCTTGCAA-TGCT 707
| | |||||||||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 684 G-G-GTGTGTACATGAGC--T-TTATGCCTTATTTGAAACATTGAGATCTTGCAAATGCT 738
Query 708 TT-AAGCCAATAATCTGCT 725
|| |||||||||||| |||
Sbjct 739 TTTAAGCCAATAATCCGCT 757
> AT5G41700.4 | Symbols: UBC8, ATUBC8 | ubiquitin conjugating enzyme
8 | chr5:16675842-16677509 FORWARD LENGTH=803
Length=803
Score = 265 bits (143), Expect = 5e-70
Identities = 290/361 (80%), Gaps = 10/361 (3%)
Strand=Plus/Plus
Query 176 ATGTTCCATTGGCAAGCAACTATCATGGGTCCAACAGATAGCCCGT-TTGCCGGAGGTGT 234
||||| ||||||||||| || || |||||||| |||| || |||| || | || |||||
Sbjct 158 ATGTTTCATTGGCAAGCTACAATTATGGGTCCTGCAGAGAGTCCGTATT-CAGGCGGTGT 216
Query 235 GTTTCTCGTTACCATTCACTTCCCTCCTGACTACCCATTCAAACCTCCAAAGGTTTCCTT 294
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| | ||
Sbjct 217 GTTTCTCGTTACCATTCACTTCCCTCCGGACTATCCATTCAAACCACCAAAGGTTGCATT 276
Query 295 CCGCACCAAGGT-TTATCACCCAAATATCAACAGTAATGGAAGTATCTGTCTTGACATTC 353
| || ||||| || |||||| ||||||||||| || ||||| || || |||||||||
Sbjct 277 TAGGACGAAGGTGTT-TCACCCTAATATCAACAGCAACGGAAGCATTTGCCTTGACATTT 335
Query 354 TCAAAGAGCAGTGGAGCCCTGCACTTACCGTATCCAAGGTTCTT-CTGTCGATATGCTCA 412
| ||||| || ||||||||||| || ||| | |||||||| || || |||||||| ||
Sbjct 336 TGAAAGAACAATGGAGCCCTGCCCTCACCATTTCCAAGGTG-TTGCTCTCGATATGTTCG 394
Query 413 TTGCTGACGGATCCAAACCCTGATGATCCTTTGGTTCCTGAAATAGCTCACATCTACAAG 472
|| | || |||||||| || ||||| |||||||| || || || || ||||| |||||
Sbjct 395 CTGTTAACAGATCCAAATCCAGATGACCCTTTGGTACCAGAGATTGCACACATGTACAAA 454
Query 473 ACAGACCGAGTCAAGTACGAGTCTA-TGGCTC-AATCCTGGACCCAGAAGTATGCAATGG 530
|| ||| ||| ||| |||||| ||| || | || | ||||| ||||||||||| ||||
Sbjct 455 ACCGACAGAGCCAAATACGAGGCTACTG-CAAGAAAC-TGGACTCAGAAGTATGCCATGG 512
Query 531 G 531
|
Sbjct 513 G 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35163902900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5