BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495704
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56170.1 | Symbols: LLG1 | LORELEI-LIKE-GPI-ANCHORED PROTEIN... 1157 0.0
> AT5G56170.1 | Symbols: LLG1 | LORELEI-LIKE-GPI-ANCHORED PROTEIN
1 | chr5:22735915-22737311 FORWARD LENGTH=867
Length=867
Score = 1157 bits (626), Expect = 0.0
Identities = 739/792 (93%), Gaps = 14/792 (2%)
Strand=Plus/Plus
Query 1 TCTCTTTCATCTTCGTGGTTTGCCATAGCTCTTCTTGAATCAAAGTCGTCTTCTTGAAAT 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 58 TCTCTTTCATCTTCGTGGTTTGCCATAGCTCTTCTTGAATCAAGGTCGTCTTCTTGAAAT 117
Query 61 CAGATCTCTTCGTGACTTCTCCTGTAACCAACAAAGAACCATGGAGCTCctctctagagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CAGATCTCTTCGTGACTTCTCCTGTAACCAACAAAGAACCATGGAGCTCCTCTCTAGAGC 177
Query 121 tcttttcttttttcttctactctcaactacactttcttctttctcatcttcaagtttcat 180
||||||||| ||||||||||||||| | | ||||||||||||| ||||||||||||||
Sbjct 178 TCTTTTCTTCTTTCTTCTACTCTCAGTT-C--TTTCTTCTTTCTCTTCTTCAAGTTTCAT 234
Query 181 ttcaGATGGTGTGTTCGAATCTCAGACTTTGGTTATTGGAAGAAACCTGCTTCAGACCAA 240
||||||||| || ||||||||||||| ||||||| |||| |||||| |||||||||||||
Sbjct 235 TTCAGATGGGGTCTTCGAATCTCAGAGTTTGGTTCTTGGCAGAAACTTGCTTCAGACCAA 294
Query 241 GAAAACATGTCCTGTGAACTTTGAGTTTATGAACTACACGGTCATAACCAGCAAATGCAA 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 295 GAAAACATGTCCTGTGAACTTTGAGTTTATGAACTACACGATCATAACCAGCAAATGCAA 354
Query 301 AGGTCCCAAATACCCACCAAAGGAATGTTGCGGCGCCTTCAAGGACTTTGCGTGTCCTTA 360
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 355 AGGTCCCAAATACCCACCAAAAGAATGTTGTGGCGCCTTCAAGGACTTTGCGTGTCCTTA 414
Query 361 CACTGACCAGCTCAACGACCTCAGCTCAGATTGTGCAACCATTATGTTCAGTTACATCAA 420
||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||
Sbjct 415 CACTGACCAGCTCAACGACCTGAGCTCGGATTGTGCAACCACTATGTTCAGTTACATCAA 474
Query 421 TCTCTATGGTAAATACCCGCCTGGAATTTTCGCTAACCAGTGCAAAGAAGGTAAAGAAGG 480
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 475 TCTCTATGGAAAATACCCGCCTGGACTTTTCGCTAACCAGTGCAAAGAAGGTAAAGAAGG 534
Query 481 TCTCGAATGTCCTGCCGGATCCCAGTTGCC-CGCACA-ATCAACATCAGACGTAAACGCA 538
||||||||| |||||||||||||||||||| | || | | || || |||| |||||||||
Sbjct 535 TCTCGAATGCCCTGCCGGATCCCAGTTGCCTC-CAGAGA-CATCAGCAGAGGTAAACGCA 592
Query 539 GCAACTACCTCTTCGTCCCGTCTTTGGCTGACCATTTCCGCAGCTCTATTGGTTTTTGTT 598
||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct 593 GCAACTACCTCGTCGTCCCGTCTTTGGCTGACCGTTTCCGCGGCTCTTTTGGTTTTTGTT 652
Query 599 AAGTTGTTCTGAGGCTGAGAAAGCCGGATTTCTGCAATGAACTTGT-A-A-CAACCTGAG 655
|||||||||||||||||| ||| ||| ||||||||||||||||| | | | |||||||||
Sbjct 653 AAGTTGTTCTGAGGCTGATAAATCCGAATTTCTGCAATGAACTTATTACAACAACCTGAG 712
Query 656 GAAGAGAATGTATGTATATCCACGATTTGTTTTACTGTTTGAACTATCTCATTCTTTTGT 715
|||||| |||||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 713 GAAGAGGATGTATGTATATCCACGATTTGTTTTACTGTT-GTACTGTCTCATTCTTTTGT 771
Query 716 TATTAGGGAGTTCaaaaaaaTTCTAAATGATAATTTGTAATGGCTTTTGTGCGTATTA-T 774
|| |||||||||||||||| |||||||||||||||||||||||| |||||| || | | |
Sbjct 772 TACTAGGGAGTTCAAAAAA-TTCTAAATGATAATTTGTAATGGCCTTTGTGTGTCT-ACT 829
Query 775 TGTCTCTTCTTA 786
||||||||||||
Sbjct 830 TGTCTCTTCTTA 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5