BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495709
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56200.1 | Symbols: | C2H2 type zinc finger transcription f... 1849 0.0
> AT5G56200.1 | Symbols: | C2H2 type zinc finger transcription
factor family | chr5:22747768-22749249 FORWARD LENGTH=1482
Length=1482
Score = 1849 bits (1001), Expect = 0.0
Identities = 1234/1338 (92%), Gaps = 50/1338 (4%)
Strand=Plus/Plus
Query 97 GAAGAAGAAGATGATCATGGAGCTAAGAGTATGGATCTAGAGGAAGGAGATGTGgaagaa 156
||||| ||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct 154 GAAGAGGAAAATGATCATGAAGCTAAGAGTATGGATCTAGAGCAAGGAGATGTGGAAG-A 212
Query 157 gtagaagaagaagaagaagagaagaagCATATATGTGGTGAATGTGGTAAAAGGTTTGTG 216
|||||||| | ||||||||| || ||||||||| |||||||||||||||||||||||
Sbjct 213 --AGAAGAAG--G-AGAAGAGAAAAAACATATATGTTGTGAATGTGGTAAAAGGTTTGTG 267
Query 217 TCAGGTAAAGCTTTAGGAGGCCATAAACGGATTCATGCGCTCGAAACTCGTAAATTCTCA 276
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 268 TCAGGTAAAGCTTTAGGAGGTCATAAACGGATTCATGTGCTCGAAACTCGTAAATTCTCA 327
Query 277 ATGATGAGACCAAAGATGGTGTCTGGTATGGTTGGTAGATCTGAAAGAGGTGACTTAGAA 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 ATGATGAGACCAAAGATGGTGTCTGGTATGGTTGGTAGATCTGAAAGAGGTGACTTAGAA 387
Query 337 GTGGCTTGTTGTGTTTGTTACAAGAAGTTTACATCAATGAAGGCTTTGTATGGACACATG 396
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 388 GTGGCTTGTTGTGTTTGTTACAAGAAGTTTACATCAATGAAGGCTTTATATGGACACATG 447
Query 397 AGGTTTCATCCAGACAGAGGTTGGAAAGGAGTTTTG---CCTCCT-C-C-TCTTCCTCAT 450
||||||||||||||||||||||||||||| |||||| |||||| | | ||||||||||
Sbjct 448 AGGTTTCATCCAGACAGAGGTTGGAAAGGTGTTTTGCCTCCTCCTCCTCTTCTTCCTCAT 507
Query 451 CCACTCGGTAATTCATCGTCTTCTACACTCTCTATtgatgatcatgatgatgagtttata 510
||||| ||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 508 CCACTTGGTAATTCATCGTCTTCTACA----C---T--TGATCATGATGATGAGTTTATA 558
Query 511 agctc-g-----gat--t-atgatga---tgatgat--t-ttgatgatgatgatgatgaG 555
||||| | ||| | ||||||| ||||||| | |||||||||||||||||||
Sbjct 559 AGCTCAGATTATGATGATGATGATGATTTTGATGATGATGATGATGATGATGATGATGAG 618
Query 556 AACTCGGAGTTATGGGACAGTAATTTGGAATTGGAAAACGTTGTTGAACCGATTAAAGGA 615
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 619 AACTCGGAGTTATGGGACAGTAATTTGGAATTGGAAAACGTTGTTGAATCGATTAAAGGA 678
Query 616 TGGTCAACAAAAGGGAAGAGAGGAAGTAGAAGTGCTTTGAAGTTTGATGAATTGGATTTG 675
|||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||
Sbjct 679 TGGTCAACAAAAGGGAAGAGAGGAAGGAGAGGTGATTTGAAGTTTGATGAAGCAGATTTG 738
Query 676 AAGGATCCATCACCGGAAGATGTGAAGGATATTGATGATGCTAATGGTCTATTGTTCTTA 735
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AAGGATCCACCTTTAGAAGATGTGAAGGATATTGATGATGCTAATGGTCTATTGTTCTTA 798
Query 736 GCTACTACTGCAGAAGCAGCTGCTAATCTTAATGTTGCGGAGACTTCTGTTTCGCATTCC 795
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 799 GCTACTACTGCAGAAGCAGCTGCTAATCTTAATGTTGCTGAGACTTCTGCTTCGCGTTCC 858
Query 796 GTTGAGGAAAAATATCTGGAAATGGTCAAGAAGAGGAAGAAGAAGCAGAAAAGATTGTCT 855
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 859 GTTGAAGAGAAATATCTGGAAATGGTCAAGAAGAGGAAGAAGAAGCAGAAGAGATTGTCT 918
Query 856 GAGATGGA-AAA-AG-AATCAACATCTA--C-TCAGGATCATCAGCTTGATCA-G--GTT 906
|||||||| ||| || ||||||||||| | ||| ||||||||||||||||| | |||
Sbjct 919 GAGATGGAGAAAGAGTCATCAACATCTACTCATCATGATCATCAGCTTGATCAGGTTGTT 978
Query 907 GTTGTTGCAGCTGAGGAAGGTGGTGGTGCCGGTGCACGTGAGAATTCTCACGTGTGTGTG 966
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 979 GTTGTTGCAGCTGAGGAAGGTGGTGGTGCCGGTGCACGTGAGAA---GCACGTGTGTGTG 1035
Query 967 ACTTGCAACAAGTCGTTTAGTTCTTATCAAGCTTTAGGAGGTCATAGAGCAAGTCACAAC 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 ACTTGCAACAAGTCGTTTAGTTCTTATCAAGCTTTAGGAGGTCATAGAGCAAGTCACAAC 1095
Query 1027 AAGGTCAAGATATTGGAGAATCATCAAGCCAGGGCAAACGCTGAAGCTTCATTACTTGGA 1086
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1096 AAGGTCAAGATATTGGAGAATCATCAAGCTAGGGCAAACGCTGAAGCTTCATTACTTGGA 1155
Query 1087 ACTGAAGCAATAACAACCGGTTTAGCTAGTGCTCAAGGATCAAACACATCTTTAAGCAGT 1146
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1156 ACTGAAGCAATAATAACCGGTTTAGCTAGTGCTCAAGGAACAAACACATCTTTAAGCAGT 1215
Query 1147 AGTCATAATGGAGATCATGTTTGTAATATATGTCATAAAAGCTTCTCAACAGGTCAAGCT 1206
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1216 AGTCATAATGGAGATCATGTTTGTAATATATGTCACAAAAGCTTCTCAACAGGTCAAGCT 1275
Query 1207 CTTGGAGGTCACAAGAGATGTCATTGGACTGGACCAGTTTCTACTGAGGCTGCAACCGCG 1266
||||| ||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||
Sbjct 1276 CTTGGTGGTCACAAGAGATGTCATTGGACTGCACCAGTTTCTACTGTGGCTCCAACCACG 1335
Query 1267 GCTCCAACCTCTGCTCCAACTGCTCCTGCAGGAGCCTCTTCTAGTCAGGTAACAGAGACA 1326
| ||||||| |||||||||| | ||| ||| || ||||||||||| ||||||||||||
Sbjct 1336 GTTCCAACCGCTGCTCCAACCGTTCCAGCAACTGCGTCTTCTAGTCAAGTAACAGAGACA 1395
Query 1327 GTGCAAGAGGTGAAGAAATTGAAGAGAA-AGTTTTTGGAGTTTGACTTGAATGAGTTGCC 1385
|| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1396 GTACAAGAGGTGAAGAAATTGAAGAGAAGAGTTTT-GGAGTTTGACTTGAATGAGTTGCC 1454
Query 1386 ACCTAACGAAGAAGAAGA 1403
||||||||||||||||||
Sbjct 1455 ACCTAACGAAGAAGAAGA 1472
Score = 154 bits (83), Expect = 2e-36
Identities = 100/108 (93%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 1 ATGGAACACTTGCGAGGTTACAAAACAAACTGTGGATTCTCACTTGGGAAACCGAGATTC 60
||||| || || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACCAATTACGAGGTTACAAAACCAACTGTGGATTCTCACTTGGGAAACCGAGATTC 60
Query 61 GGATCTATGAAGGTTAAAATCCCAAGGATCCAACCTGAAGA-AGAAGA 107
|||||||| ||||||||||||||||||||| ||||||| || ||||||
Sbjct 61 GGATCTATTAAGGTTAAAATCCCAAGGATCAAACCTGA-GATAGAAGA 107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69126150465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5