BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495713
Length=3496
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56240.2 | Symbols: | INVOLVED IN: biological_process unkno... 4510 0.0
AT5G56250.2 | Symbols: HAP8 | hapless 8 | chr5:22768577-2277289... 230 9e-59
> AT5G56240.2 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
hapless 8 (TAIR:AT5G56250.1). | chr5:22759805-22764587 REVERSE
LENGTH=3532
Length=3532
Score = 4510 bits (2442), Expect = 0.0
Identities = 3196/3534 (90%), Gaps = 156/3534 (4%)
Strand=Plus/Plus
Query 44 AGTGcttcgttcttcttctttctctcaatctctttcttctcttcaatgctctctttctct 103
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 72 AGTGCTTCGTTCTTCTTCTCTCTCTCAATCTCTTTCTTCTCTTCAATGCTCTC-TTCTCT 130
Query 104 ctctaagaagcca-tttctt-ttctcttGCCAAGAAAAACCATCTAAGGTTTTAAGATAA 161
||||||||| ||| ||| || |||| |||||||||||| | | |||| | |||| ||
Sbjct 131 CTCTAAGAAACCACTTTTTTCTTCTTTTGCCAAGAAAATCTAAAGAAGGAGTAAAGAGAA 190
Query 162 GAGTCAGATTTAGCTAGGTGATGATAAAGAAGATCTGGTGTTATGCGGAAGTATTTGGGA 221
||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 191 GAGTCAGATTTGGATAGGTGATGATAAAGAAGATCTGGTGTTATGCAGAAGTATTT--G- 247
Query 222 AGCGAAGAGGAAGAGGCAAATAGTAACAGTGGAAGAATCAAATGTTCTTATCCACTGAGA 281
| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 -G-GAA-ACGAAGAGGCAAATAGTAACAGTGGAAGAATCAAATGTTCTTATCCACTGAGA 304
Query 282 ACCCACCAAATGACCCActttcttcttcttcttctcc-tcctttcttacatctccccact 340
||||||||||||||||||||||||||||||||||||| | ||| | ||||||| || ||
Sbjct 305 ACCCACCAAATGACCCACTTTCTTCTTCTTCTTCTCCTTTCTTAC-AACATCTCACCTCT 363
Query 341 tcttccCATGAGTTAGGTCAATCCCATCTCTCCAATTTCTCCATCAGAGATTACGCATAT 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TCTTCCCATGAGTTAGGTCAATCCCATCTCTCCAATTTCTCCATCAGAGATTACGCATAT 423
Query 401 AGTAACCGGAAGAACAACATCAAGAACAATTGGCCATTTTCCTCAAAAAGTCTCCAACTT 460
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 424 AGTAACAGGAAGAACAACATTAAGAACAATTGGCCATTTTCCTCAAAAAGTCTCCAGCTT 483
Query 461 TTCTCAACTCATGGCATAACTGATCCTTTGCCACCGTTACAGAAAG-TTTCCACCGTAAG 519
||||||||||||||| ||||| ||||||| |||||||| ||| ||| ||||||| |||||
Sbjct 484 TTCTCAACTCATGGCGTAACTAATCCTTTACCACCGTTTCAG-AAGTTTTCCACAGTAAG 542
Query 520 TAACCAGTTTGAGACCAAGGCTAGTTCATCGTCGGGGAAGCAAATCG--T-ATCCTATGT 576
|| | |||||||||||| |||||| | || || ||||||||||| | | |||||||||
Sbjct 543 TAGCAAGTTTGAGACCACTGCTAGTCCGTCTTCCGGGAAGCAAATAGTATCATCCTATGT 602
Query 577 TCATCATGG-A-AGA----GATTTGGCTAAACTTGGGTTGAATCAGACATTAGCAGAGAC 630
|||||| || | ||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 603 TCATCAAGGAAGAGATTTGGATTTGGCTAAACTTGGGTTAAATCAGACAGTAGCAGAGAC 662
Query 631 TAGTA--AAGGAGGAGTTAGTAGCCAATCAAGAATCATCGAGAATGGTTTGTTTTCGAGT 688
||||| || ||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 663 TAGTAGTAA--AGGAGTTTGTAGCCAATCAAGAATCATCGAGAATGGTTTGTTTCCGAGC 720
Query 689 ACAAGTGTTTCCAAGTCTGAAGTAGAGATAGTTGTAGCTGCTACAAGTAACAAGAAGGAC 748
|||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct 721 ACAAGTGTTTCCAAGTCTGAAGTAGAGATACTAGTAGCTACTACAAGTAACAAGAAGGAC 780
Query 749 AACCACAGTAAAAAGTGTGGAAGAGGGATGGTGAAATCTAAAGAAGATAGTTGTGGTGGC 808
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 781 AACCACAGTAGAAAGTGTGGACGAGGGATGGTGAAATCTAAAGAAGATAGTTGTGCTGGC 840
Query 809 CTTGTGACGACTTCTGAATCAATAATGGCTTCAAAAACATGTCCTATTTGCAAAACCTTC 868
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTTGTGACGACTTCTGAGTCAATAATGGCTTCAAAAACATGTCCTATTTGCAAAACCTTC 900
Query 869 TCCTCAGCTTCTAACACAACTTTGAATGCTCACATCGACCAGTGTTTGTCTGTTGACTCA 928
|| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 901 TCTTCAGCTTCTAACACAACTTTGAATGCTCACATCGATCAGTGTCTGTCTGTTGACTCA 960
Query 929 G--C-ACTGCCACCGGTTGTTAGTAGTAAGCCAAACAAGCCTAGAAGTAAG---CCACGG 982
| | ||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 961 GCACTACTACCACCGGTTGTTTTTAGTAAGCCAAACAAGCCTAGAAGTAAGCCACCACGG 1020
Query 983 GTGAAAGTTAAAACGATGGTTGATATCTACGCTTCTGCGAAAGAAGGCACATTAGAAGAT 1042
|||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1021 GTGAAAGTTAAAACAATGGTTGATATCTACGCTTCTGCGAAACAAGGCACGTTAGAAGAT 1080
Query 1043 CTTGATAAAAGAAATGGAACAAAGTGGGTGTCGATTTTGAGTTATACAAATAGAGTTGTT 1102
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1081 CTTGATAGAAGAAATGGAACAAAGTGGGTGTCGATTTTGAGTTATTCAAATAGAGTTGTT 1140
Query 1103 GCTGAGAAGTCTGAAGTGTCTAAGAAGCGGAAAGTTTCGCCTGTTGGCGTTGGTCCGGTT 1162
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1141 GCTGATAAGTCTGAAGTGTCTAAGAAGCGGAAAGTCTCGCCTGTTGGTGTTGGTCCGGTT 1200
Query 1163 TATATTGATGCTAAGGGGCAGAAATTGCGGATTTTATCTGAGTTCAGCGAGAAGAAGACT 1222
||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| |
Sbjct 1201 TATATTGATGCTAAGGGACAGAAATTGCGGATTTTATCCGGGTTCAGCGAGAAGAAGAGT 1260
Query 1223 TCTACTACTCCGTCGAGAGAACAGCATGAGGATGGTAGTGGTGGTAAGAAATGTTTAAGC 1282
||||||||||||| ||| || |||||||||||||||||| ||| ||||||||||||| ||
Sbjct 1261 TCTACTACTCCGTTGAGGGAGCAGCATGAGGATGGTAGTAGTGATAAGAAATGTTTAGGC 1320
Query 1283 CAAGGTAGTAAAGGAAACAATAAATGCTTGAGGAAAATTCGTCGAGTAAAGAAGCCTCAC 1342
|||||||||||||| | ||||||| |||||||||||||||| || | |||||| ||||||
Sbjct 1321 CAAGGTAGTAAAGGGACCAATAAAAGCTTGAGGAAAATTCGCCGTGGAAAGAAACCTCAC 1380
Query 1343 AAGTATGTTAAACTAACCAATCACAAAGCTAATGCTCC--AG-AGATAC-CTGGAGAT-C 1397
|||| |||||||||||||||||||||||| ||| ||| || |||||| | |||| | |
Sbjct 1381 AAGTTTGTTAAACTAACCAATCACAAAGCCGATGGTCCAGAGCAGATACGC-GGAG-TGC 1438
Query 1398 AAAGAGGTTTTTCTGGAGAAGGTAGTCACACT-GGTCATCA---TAGAATCCATAATCAG 1453
||||||| |||||||||||||||||||||| | |||||||| ||||||| |||||||
Sbjct 1439 AAAGAGGGTTTTCTGGAGAAGGTAGTCACA-TGGGTCATCATCGTAGAATCTATAATCAA 1497
Query 1454 CGGATGCTAGCGAAACGTGGTCTGATTTTGAAGAAGCTAAATGAGAAAGGACATGATTTA 1513
||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 1498 CGGATGCTAGCAAAACGTGGTCTGGTTTCAAAGAAGCTAAATGAGAAAGGACATG----A 1553
Query 1514 TATGGTTTGCGGGATCAGCTATCGGATGATGAAGATACATGGTCAGGAGGAGATCCTACT 1573
| || ||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1554 -A----TT-----ATCTG--A--AGATGATGAAGATACATGGTCAGGAGGAGATCCTACT 1599
Query 1574 GTGTTGAGAGGTACTGATTTGTTTGCCACAGATTCTTATCCTTTATATAAACAGAAGCTG 1633
|||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 1600 GTGTTGAGAGGTACTGATTTGTCTGCCACAGATTCTTATCCTTTAAAGAAACAGAAGCTG 1659
Query 1634 GGGAGCGAAGTTGCTCGACCAAAAAAGGCTTTGTTTGGGAGTAAAAGTGCTCAAAGTCGT 1693
||||||||||||||| ||| ||||||| |||||||| ||||| |||||||||||||||||
Sbjct 1660 GGGAGCGAAGTTGCTGGACGAAAAAAGACTTTGTTTAGGAGTCAAAGTGCTCAAAGTCGT 1719
Query 1694 TCATTTAGAGTCCCTCAGAGTGAAAAAGAAGATGAGTCACTTGAGGGAATTCAAATA-AA 1752
||||||||||||||||||||||||||||| |||||||||||||||||| || |||| ||
Sbjct 1720 TCATTTAGAGTCCCTCAGAGTGAAAAAGAGGATGAGTCACTTGAGGGAGTT--AATATAA 1777
Query 1753 CACTCTCCGATTAAAGAAGAGCATTGCTTCATTTCAAGAAGATAAGTATCCACCTGGAAA 1812
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1778 -A----CCGATTAAAGAAGAGCGTTGCTTCATTTCAAGAAGATAAGTATCCACCTGGAAA 1832
Query 1813 GAATTTCTGCTCAGATGCTGTAGATGTTTCAGATGCATCTCCTCGTGGAACTAGCATGAG 1872
| | || | | | || ||||||||||||||||||||||||||||||||
Sbjct 1833 G-A---------AG-T--T-T---TG-CTCAGATGCATCTCCTCGTGGAACTAGCATGAG 1874
Query 1873 AAAGTTTTCCCCACCTTTTGTACCAAATGCCTGGAGGCGACTATCTGTGCCTGTGGAGCT 1932
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1875 AAAGTTTTCCCCACCTTTTGTACCAAATGCCTGGAGACGACTATCTATGCCTGTGGAGCT 1934
Query 1933 AAATAAAGCTCGGTTGGATTTCTCGGAGGAAGAAGATGAAGAAGAAACAGGGAAATGGGA 1992
||| |||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct 1935 AAAGAAAGCTCGGTTGGATTTCTCTGAGGAAAAAGATGATGAAGAAACAGGGAAATGGGA 1994
Query 1993 ATCTGAAATGACTCAAGAACGTGAGCTGCCAGATAATGATTATGTTTCTGGTGATAATGG 2052
||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct 1995 ATCTGAAATGACTCATGAACGTGAGCTGCGAGATGATGATTATGTTTCTGGTGATGATGG 2054
Query 2053 AGAAAGA-AATGAGGTCTTACTGAGATCAAATCCTTCATCTAGTGGTTACGATGATTATA 2111
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2055 GGAAA-ATAATGAGGTCTTACTGAGATCAAATCCTTCATCTAGTGGTTACGATGATTATA 2113
Query 2112 ATGATGATGACGACGAAAGTAGTGAAGAGGAAGAAGCTAATAACAAAAGAGCTCATGTTT 2171
||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 2114 ATGATGATGACGAAGAAAGTAGTGAAGAGGAAGGAGATAATAACAAAAGAGCTCATGTGT 2173
Query 2172 TGGACAAAACTGATGATATGGGTGCTGAGTTCTA-C---C--AGTCAGACAGTCCACCAT 2225
||||| |||| ||| ||| |||||||||||||| | | |||||||||||||| |||
Sbjct 2174 TGGACCAAACCGATTATACAGGTGCTGAGTTCTACCAGTCAGAGTCAGACAGTCCAACAT 2233
Query 2226 CTATTGAAATCTTACCCAGAGAGCGAGCAATGTATTACTCCGAAGTTGGGAATATGATTT 2285
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 2234 CTATTGAAATCTTACCCAGCGAGCGAGCAATGTATTACTCCGAAGCTGGGAATATGATTT 2293
Query 2286 ACGGGCAAACCTCTTGCAAGGAGAATGAAAGGTTTGATTCTGAAGTTGGACAAGGAGGCT 2345
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||
Sbjct 2294 ACGGGCAAACCTCTTGCAAGGAGGATGAAAGGTTTGATTCTGAAGTAGGACAAGGAAGCT 2353
Query 2346 TATTTGTAGAGGTTGATACCATTCCTATTCCAGGACCTCCAGGATCATTTTTACCAAGTC 2405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2354 TATTTGTAGAGGTTGATACCATTCCTATTCCAGGACCTCCAGGATCATTTTTACCAAGTC 2413
Query 2406 CTCGAGATATGGGTTTTGATGAGAATCTTGGGAACTCGTCGGTTATCACAAGCCAGGTTC 2465
|| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 2414 CTAGAGATATGGGTTTTGATGAAAATCTTGGGAACTCGTCGGTTATTACAAGCCAGGTTC 2473
Query 2466 AGTCTTCCATGGATCAGCTTGACAGAAACTCATCTGAATCACCTGTTTCCGCAGTTTCAA 2525
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2474 AATCTTCCATGGATCAGCTTGACAGAAACTCATCTGAATCACCTGTTTCCGCTGTTTCAA 2533
Query 2526 ACTTTGCAGCTGGTAGATTGAATTTTCCCGCAGAGTTATCTTCTACTTTCCGAGAAAATT 2585
|||||||||||||||||||||||||||| || |||||||| | | |||||||||||||||
Sbjct 2534 ACTTTGCAGCTGGTAGATTGAATTTTCCTGCTGAGTTATC-T-T-CTTTCCGAGAAAATT 2590
Query 2586 TCTCACCGGATATTGCCATGTCCTACTCAACAACCCCGATGAGCTTTTGTGTTCCATCTC 2645
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 TCTCCCCGGATATTGCCATGTCCTACTCAACAACCCCGATGAGCTTTTGTGTTCCATCTC 2650
Query 2646 ATTATGGGACAA-C-C-GAGGCTGAGCCAATTACCATTGACAAGACAACATTACCTTCCA 2702
|| ||||||||| | | ||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2651 ATCATGGGACAATCACTGAGGCTGAGCCAATTACCATTGACAAGACAATATCACCTTCCA 2710
Query 2703 GATTTAGAAACAATGATCAAGAGTCTTGTTGTTGCCAAAGAAAAGAGAGAATCTCCGAGG 2762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2711 GATTTAGAAACAATGATCAAGAGTCTTGTTGTTGCCAAAGAAAAGAGAGAATCTCCGAGG 2770
Query 2763 GCATTACTCGGAATCATCAAGGATCTCACTTGCTGCAGCGAAGAGCAGCTTCTTCGTCAA 2822
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2771 GCATTACTTTGAATCATCAAGGATCTCACTTGCTGCAGCGAAGAGCAGCTTCTTCGTCAA 2830
Query 2823 TCACGATGAACTTAACTAATTCACCCACACGTTTGGATCCAAATCATCCATTTGAGCAGT 2882
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2831 ACACCATGAACTTAACTAATTCACCCACACGTTTGGATCCAAATCATCCATTTGAGCAGT 2890
Query 2883 CACCATACAAGATCCAACAAGCTTTGGATC-TC-CA-GAGTAAGTTCTCCAGCA-GAACG 2938
|||||||||||| ||||||||||||||||| || | ||||||||||||||||| ||| |
Sbjct 2891 CACCATACAAGACCCAACAAGCTTTGGATCTTCAGATGAGTAAGTTCTCCAGCAGGAA-G 2949
Query 2939 AATCCCAACGCCGTTGTGCCTCCAAGTCCTTCTAACCCGGTTTTAAGGTTAATGGGAAAA 2998
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2950 AGTCTCAACGCCGTTGTGCCTCCAAGTCCTTCTAACCCGGTTTTAAGGTTAATGGGAAAA 3009
Query 2999 GACTTGATGGTCATGAACCAAGGAGAAGCAGATGAAGAAGCATCCCGGTCTAGCTTAACA 3058
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3010 GACTTGATGGTCATGAACCAAGGAGAAGCAGATGAAGAAGCATCCCGGTCAAGCTTAACA 3069
Query 3059 CCAACCCCTCAGTTTGTTGATCCTCCTTGTGGTGGAACTGGCTTATACTTCAACACAGGT 3118
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3070 CCAAATCCTCAGTTTGTTGATCCTCCTTGTGGTGGAACTGGCTTATACTTTAACACAGGT 3129
Query 3119 CTCTATTTAAGAAACAGTTTCGAGTcaacacaacaaccacaagcccaaacccaaccacaa 3178
||||| ||||||||||||||||| |||||||| |||||||||| ||| | |||| | |
Sbjct 3130 CTCTACTTAAGAAACAGTTTCGATTCAACACATCAACCACAAGTTCAAGCACAAC-A-A- 3186
Query 3179 ccacaaccacaaGCTGCAGCATTCAGAAACAATTTTGATCATGTAAGATACTTTTCTCCG 3238
| | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3187 C-A-ATC-ACAAGCTGCAGCATTCAGAAACAATTTTGATCATGTAAGATACTTTTCTCCG 3243
Query 3239 AGCTAGTCA-C-C-G-----TAAAGTTTCGACCTTGATGCAGTGTAAGAAGCAACCGAGA 3290
||||||||| | | | ||||||||| |||||||||||||||||||||||||| |||
Sbjct 3244 AGCTAGTCATCACCGCAAAGTAAAGTTTCAACCTTGATGCAGTGTAAGAAGCAACCAAGA 3303
Query 3291 AGTGGGTTCTCTTCGAAAACCGATCATCAAACATGGATGCATTCGG-GTTTTCAT--T-- 3345
|||||||||||||||||||||||||||| ||||||| |||||| || ||||| | |
Sbjct 3304 AGTGGGTTCTCTTCGAAAACCGATCATCGAACATGGGTGCATT-GGTGTTTTTAAGGTAG 3362
Query 3346 -TTCTA--TGCT-T-CAAC-T---CT-T--T-C-T--------GCAGAGACTTTGT-GTA 3382
||| | || | | |||| | || | | | | ||||||||| ||| |||
Sbjct 3363 ATTCCAAATGTTCTACAACATTTTCTATGCTTCATCTCTTTCTGCAGAGACTGTGTAGTA 3422
Query 3383 GTT-ACTATTTACAAAAGAAAAAGCAAACACTTGAAAATAACAAACACTCTGTAGAAGGA 3441
||| ||| ||||||||| ||||||||||||||||||||||||| | ||||||||||||
Sbjct 3423 GTTTACTGTTTACAAAAAAAAAAGCAAACACTTGAAAATAACA--C--TCTGTAGAAGGA 3478
Query 3442 TAAGTAACTTAAGGCTTTTATTGCCACC-AAAGTTATCAAGTTATAGTTTATCT 3494
|||||||||| || |||||| ||||| | |||||||| || |||||||||||||
Sbjct 3479 TAAGTAACTTCAGACTTTTAATGCCAACTAAAGTTATAAACTTATAGTTTATCT 3532
> AT5G56250.2 | Symbols: HAP8 | hapless 8 | chr5:22768577-22772892
REVERSE LENGTH=2985
Length=2985
Score = 230 bits (124), Expect = 9e-59
Identities = 252/311 (81%), Gaps = 20/311 (6%)
Strand=Plus/Plus
Query 819 CTTCTGAATCAATAATGGCTTCAAAAACATGTCCTATTTGCAAAACCTTCTCCTCAGCTT 878
||||||| || | ||||||| | ||| ||||| || |||||||||||||| || ||||
Sbjct 714 CTTCTGATTC--T-ATGGCTTTGAGAACTTGTCCCATCTGCAAAACCTTCTCGTCTGCTT 770
Query 879 CTAACACAACTTTGAATGCTCACATCGACCAGTGTTTGTCTGTTGACTCAGCACTGCCAC 938
||||||| ||||| ||||| ||||| || |||||| ||||||||||||| | | ||
Sbjct 771 CTAACACTACTTTAAATGCGCACATTGATCAGTGTCTGTCTGTTGACTC-G---GGGCAG 826
Query 939 CGGTTGTTAGTAGTAAGCCAAACAAGCCT-AGAAGTAAGCCACGGGTGAAAGTTAAAACG 997
| | | | | |||||||||||| |||| || | |||||||||| |||||||||||||
Sbjct 827 CAGCCG--ATTCGTAAGCCAAACAGGCCTAAG-ACTAAGCCACGGTTGAAAGTTAAAACC 883
Query 998 ATGGTTGATATCTACGCTTCTGCGAAAGAAGGCACATTAGAAGATCTTGATAAAAGAAAT 1057
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 ATGACTGATATCTATGCTTCTGCGAAAGAAGGCACATTAGAAGATCTTGATAAAAGAAAT 943
Query 1058 GGAACAAAGTGGG-TGTCGATTTTGAGTTA-TACAAATAGAGTTGT-TGCTGA-GA-A-G 1111
|| |||||||||| | | ||||| ||| || | | || | ||||| | |||| || | |
Sbjct 944 GGCACAAAGTGGGCTAT-GATTTCGAGCTACT-CTAACCGTGTTGTCT-CTGATGATAAG 1000
Query 1112 TCTGAAGTGTC 1122
||||||||||
Sbjct 1001 CCTGAAGTGTC 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 174029125267
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5