BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495715
Length=3110
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56250.2 | Symbols: HAP8 | hapless 8 | chr5:22768577-2277289... 3845 0.0
> AT5G56250.2 | Symbols: HAP8 | hapless 8 | chr5:22768577-22772892
REVERSE LENGTH=2985
Length=2985
Score = 3845 bits (2082), Expect = 0.0
Identities = 2628/2873 (91%), Gaps = 112/2873 (4%)
Strand=Plus/Plus
Query 233 AGGTTTCATAGGCTCACAAATTTGGTATTATAAAGATCTGGTGTTATGCAGAAGAGCA-G 291
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 90 AGGTTTCATAGGCTCTCAGATTTGGTATTATAAAGATCTGGTGTTATGCAGAAGAGCAGG 149
Query 292 G--GTCAAGG-T--CAAAAGTGAAGAAGTGAATAGTAGTAACAGTGGAAGAAGTATCAAA 346
| | ||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 150 GACGACAAGGTTGATAAAAGTGAAGAAGTGAATAGTAGTAACAGTGGAAGAAGAATCAAA 209
Query 347 TGTTCTTATCATCCACTGATCAAACAAGTCCTTCTAACAACAATCCATCATCTTCTTCTA 406
|||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 210 TGTTCTTATCATCCACTGATCAAAGAAGCCCTTCTAATAACAATCCATCATCTTCTTCTA 269
Query 407 ATTTCTTACATCTGACCAACTCTTGTGATGAGTTAGGTCAATCACATCTTTCAAGTTTCT 466
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 270 GTTTCTTACATCTGACCAACTCTTGTGATGAGTTAGGTCAATCACATCTTTCAACTTTCT 329
Query 467 CCATCAGAGATTATGCATTTAGTTACCGGACCAAGAACATCAAGAAAAGCTGGCCTTTTT 526
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 330 CCATCAGAGATTATGCATTTAGTTACCGGACCAAGAACATCAAGAAAAGTTGGCCTTTTT 389
Query 527 CCTCAACAAGTTTGCAACTTTGTTTAAAACATGGCTTAAGTGATCCATTGCCACCGATTC 586
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 390 CCTCAACAAGTTTGCAACTTTGTTTAAATCATGGCTTAACTGATCCATTGCCACCG---- 445
Query 587 AGCCTCTTGGCACTGTGATAAACCATCCTCCTGAAGTGAAGAAGCCAAACATAACTCATG 646
| || || | ||||||||||||||||||||||||||||||||||
Sbjct 446 A-----TT--CA----G---------CCTCCTGAAGTGAAGAAGCCAAACATAACTCATG 485
Query 647 TCGAAGCGATAAGTAACAAGAAAAAGTCAGAGAAACTTGGCTCTAATCAGACATTAGTAG 706
| |||||| ||||| |||||| |||||||||||||||||||||| |||||| ||||||||
Sbjct 486 TGGAAGCGGTAAGTCACAAGAGAAAGTCAGAGAAACTTGGCTCTTATCAGATATTAGTAG 545
Query 707 AGA-T--TAAACAAGGCTTTGAGAATGGTTTGTTGGCGAGTGGTTCGAAATCCAAAATAC 763
||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 AGACTACTAAACAAGGATTTGAGAATGGTTTGTTGGCGAGTGGTTCGAAATCCAAAATAC 605
Query 764 AAGTAGCTATGGCTAACAAGAATCCTAGAAAAAAGGGTGGGTTAG-TAGTGAAACCTGGA 822
|||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 606 AAGTAGCTATGGTTAACAAGAATCCTAGAAAAAAGTGTGGGTT-GATAGTGAAACCTGGA 664
Query 823 GCTTGTGTGGATAGTGGAT-CAAAAGAAGATCATAGTTGCCTCTTTTCAGCTTCTGAATC 881
||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||
Sbjct 665 GCTTGTGTGGATAGTGG-TGGAAAAGAAGATCATAGTAGCCTCTTTTCAGCTTCTGATTC 723
Query 882 TATGGCTTTGAGAACTTGTCCCATCTGCAAAACCTTCTCGTCTGCTTCTAACACTACTTT 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TATGGCTTTGAGAACTTGTCCCATCTGCAAAACCTTCTCGTCTGCTTCTAACACTACTTT 783
Query 942 AAATGCGCACATGGATCAGTGTCTGTCTGTAGACACGGGACAGCAGCGGATTAGTAAGCC 1001
|||||||||||| ||||||||||||||||| ||| |||| ||||||| |||| |||||||
Sbjct 784 AAATGCGCACATTGATCAGTGTCTGTCTGTTGACTCGGGGCAGCAGCCGATTCGTAAGCC 843
Query 1002 AAACAGGCCTAAGACTAAGCCACGGTTGAAAGTTAAATCGATGAGTGATATCTACGCTTC 1061
||||||||||||||||||||||||||||||||||||| | |||| ||||||||| |||||
Sbjct 844 AAACAGGCCTAAGACTAAGCCACGGTTGAAAGTTAAAACCATGACTGATATCTATGCTTC 903
Query 1062 TGCAAAAGAAGGCACATTAGAAGATCTTGATAAAAGAAATGGAACTAAGTGGGCTATGAT 1121
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 904 TGCGAAAGAAGGCACATTAGAAGATCTTGATAAAAGAAATGGCACAAAGTGGGCTATGAT 963
Query 1122 TTCGAGCTACTCTAACCGGGTTGTGTCTGATAATAAGCCTGAAGTCG-CCAACAAAGAAA 1180
|||||||||||||||||| ||||| |||||| ||||||||||||| | ||||||||| ||
Sbjct 964 TTCGAGCTACTCTAACCGTGTTGTCTCTGATGATAAGCCTGAAGT-GTCCAACAAAGTAA 1022
Query 1181 AGAAGCGGAGCGTGTTGCATGTTCGCATTGATGAAGATGCTGCTGGCATTGGACCTGTTT 1240
||||||| ||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1023 AGAAGCGAAGCGTGTCGCGTGCTCGCATTGATGAAGATGCTGCTGGCATTGGACCTGTTT 1082
Query 1241 ACATTGATGCTAAGGGCCAAAAACTGCGGATTTTATCTAAGTTTAACGAGAAAGCTTCTG 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 ACATTGATGCTAAGGGCCAAAAACTGCGGATTTTATCTAAGTTTAACGAGAAAGCTTCTG 1142
Query 1301 ATCCATTAAGA-GAG--CATGGAGATGTTTGTGAGAAGAAATCTTCTAGTGAAGGTAAAG 1357
|||||| |||| ||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1143 ATCCATCAAGAAGAGAGCATGAAGAAGTTTGTGAGAAGAAATCTTCTAGTGAAGGTAAAG 1202
Query 1358 GGAGCAAAAGCTTTAAGAAAAAACTCCGGGGAGAGAAATATTACAAGCATCCTAAACTAG 1417
|| |||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct 1203 GGGGCAAAAGCTTTAGGAAAAAACTTTGGGGAGAGAAACATTACAAGCATCGTAAACTAG 1262
Query 1418 TTCCTCAAA-CAAGAAAACTCACTGTTCGTAAAGGCAATGCTTCAGAGATGCCGGAGTAT 1476
||||||||| || |||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1263 TTCCTCAAAACA-GAAAACTCACTGTTCGTAAAAGCAATGCTTCAGAGATACCGGAGTAT 1321
Query 1477 CCAAGAGGATATTCTGAAGAAGGTAAAGACTTTGAGAGGTTAGAAACTTCAGGTCCTGGT 1536
| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1322 CGAAGAGGATATTCTAAAGAAGGTAAAGACTTTGAGAGGTCAGAAACTTCAGGTCCTGGT 1381
Query 1537 CA-GCGTAGAATTTTCAACCAGCGGATACTAACAAAACGT-CGTCTTTCAAGACATGGAA 1594
|| | ||||||| |||||||||||||| |||||||| ||| | ||||||||| |||||||
Sbjct 1382 CAAG-GTAGAATATTCAACCAGCGGATGCTAACAAAGCGTTC-TCTTTCAAGGCATGGAA 1439
Query 1595 ATAAGAATGGGACAAA-ATTTTGTGAGCAGCCATCTGAAAATGGGCATTCATTGTCAGAA 1653
| |||||||||||| | |||| |||| | ||||| ||| || ||||||||||||||
Sbjct 1440 AGAAGAATGGGACAGACATTT-GTGA--A----TCTGAGAATTGGAATTCATTGTCAGAA 1492
Query 1654 GATCCTCTTGTATCAAGAGGTCCAAGTCATGTGAGTACTGATTTATCCGAGACAGTTTCT 1713
||||||||||| | |||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1493 GATCCTCTTGTGTTAAGAAGTCCAAGTCATGTGAGTACTGATTTGTCCGAGACAGTTTCT 1552
Query 1714 TCTCCTTTAAACAGTCTAGGGTCATGGAGAATTTGTGGGGAGAGCCAAGTCTCTGGAAAG 1773
||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1553 TCTCCTTTAAACAGTATAGGGTCATGGAGAGTTTGTGGGGAGAGCCAAGTTTCTGGAAAG 1612
Query 1774 AGCTGGGCTTTGTCTAGAAACAAAAGCGTTGAAAGTGATTTATTTGTAGCAAATCCCTTG 1833
||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1613 AGCTGGGCTTTGTCTAGGAACAGAAGCATTGAAAGTGATTTATTTGTAGCAAATCCCTTG 1672
Query 1834 AGATGTTCAATACCTGTGGAGAAGGAGTTTTCTTCCAAGGCAAAAGGCGTCATGAAGTTC 1893
||||||| || |||||||| || | || | | | |||||||||||
Sbjct 1673 AGATGTTTAACACCTGTGGCGA-G-AG-----------G-C----G---TCATGAAGTTC 1711
Query 1894 AAGAAAGCTCGATTGGATTTCTC--AGA--GAA--TGAAGATACAGGGAAATGGGAGTCT 1947
|||||||||||| |||||||||| ||| ||| |||||||| ||||||||||||||||
Sbjct 1712 AAGAAAGCTCGAATGGATTTCTCTGAGAATGAAGATGAAGATATAGGGAAATGGGAGTCT 1771
Query 1948 GAAATGACTCAAGAACGTGAACTAAGT--GATTATGATGATTGGGATGCTGATGATGGAG 2005
||||||||||||||||||||||| || |||||||||| |||||||| |||||||||||
Sbjct 1772 GAAATGACTCAAGAACGTGAACT--GTCAGATTATGATGGTTGGGATGATGATGATGGAG 1829
Query 2006 AAACTGATAAGGTTGTGCTAAGCTCAAATCCTTCGTTTAGCGGGGAAGACAATGATTATG 2065
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1830 AAACAGATAAGGTTGCGCTAAGCTCAAATCCTTCGTTTAGCGGGGAAGACAATGATTATG 1889
Query 2066 AAAGCTATGAAGAGACTGGTTATAATAACAAAGGAGATGATGCTATGTTGGACAAAACTA 2125
|||||||||||||||||||| |||| |||||||| ||||| |||||||||||||||||
Sbjct 1890 AAAGCTATGAAGAGACTGGTGATAA---CAAAGGAGGTGATGATATGTTGGACAAAACTA 1946
Query 2126 ATGATGCAGATGTTGAGTTTGAAAGTATGATTTATGAGAAAACTGGTTGCGAAACTGCGG 2185
| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||
Sbjct 1947 AAGATGCAGATGTTGAGTTTGAAAGCATGGTTTATGAGAAAACTGGTTGCGAAACCGCGG 2006
Query 2186 AACAAGAAAGCTCATTCATGGAGGTTGATCCCATTCCTATTCCAGGACCTCCGGGATCAT 2245
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2007 AACAAGAAAGCTCGTTCATGGAGGTTGATCCCATTCCTATTCCAGGACCTCCGGGATCAT 2066
Query 2246 TTTTACCAAGTCCTTGGGATATG--GG-AACTGATGCAATTGAACATCATGGAAACTCTT 2302
||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct 2067 TTTTACCAAGTCCTTGGGATATGATGGGAACTGATGCAGTTGAACATCATGGAAACTCTT 2126
Query 2303 CAGTTATTACAAGCCAAGTCCACTCTTCACAAGATCAGTTTGATCTCACTGACAGAAATT 2362
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2127 CAGTTATCACAAGCCAAGTCCACTCTTCACAAGATCAGTTTGATCTCACTGACAGAAATT 2186
Query 2363 CATCGGAATCACCTGTTTCAGCAATTTCACACTTTGCCGCTCCTGAAACACAGACATTAA 2422
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 2187 CATCGGAATCACCTGTTTCAGCAATTTCAAACTTTGCAGCTCCTGAAACACAGACATTAA 2246
Query 2423 GTCTTCATAACATCATAACCACTGACAAGAGACCTTCCAGATTCAGAGACAGTGATCAAT 2482
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2247 GTCTTCATAACATCATCACCACTGACAAGAGACCTTCCAGATTCAGAGACAATGATCAAT 2306
Query 2483 CATGTTGTTGCCAAAGAAAGGAGAAAGCTCTTGAAGATACCACATTTTGTCAACCACCAC 2542
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2307 CATGTTGTTGCCAAAGAAAGGAGAAAGCTCTTGAAGATACAACATTTTGTCAACCACCAC 2366
Query 2543 AACG-CA--TGATCCAACAAGATTTGGATTTCCTGAGTAAGTCTGTGCCTGCGATTCCTT 2599
|| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2367 CACCACAAATGATCCAACAAGATTTGGATTTCCTGAGTAAGTCTGTGCCTGCGGTTCCTT 2426
Query 2600 CAAATCCCAACCCGGTGTTGCGGCTTATGGGAAAGGATTTGATGGTTATTAACCAAAGAG 2659
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2427 CAACTCCCAACCCGGTGTTGCGGCTGATGGGAAAGGATTTGATGGTTATTAACCAAAGAG 2486
Query 2660 AAGAGCCTTCACACGACGAATCAAGTCCAAAACCAACCTCTCAGTTTCTAGATCTGTCTA 2719
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2487 AAGAGCCTTCACACAACGAATCAAGTCCAAAACCAACCTCTCAGTTTCTAGATCTTTCTA 2546
Query 2720 AGACACAACAAGCGTCTCCTGCTGTTAATCATCTTCATCGTCCTTACAGTGGGAGCGGTT 2779
||||||| |||||||||||| ||||||||| |||||||| ||||||||| || | ||||
Sbjct 2547 AGACACAGCAAGCGTCTCCTTCTGTTAATCTTCTTCATCCTCCTTACAGCGGAAATGGTT 2606
Query 2780 ATTTCGACACCAGCACAAGGTTCTACAACATTCCATGAAAATTCAGATCAAGAACTCTAC 2839
|||||||||||| ||||| ||||||||||| |||||||| |||||| ||||||||||||
Sbjct 2607 ATTTCGACACCAATACAAGCTTCTACAACATCCCATGAAAGTTCAGACCAAGAACTCTAC 2666
Query 2840 GTT-TCTCCAAGATATTA--TA-TATTCCATGGCATTTCAGATCAAAGTCCAGGCATTTT 2895
|| ||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 2667 -TTCTCTCCAAGATACTAAATAATATTCCATGGCATTTCAGATCAAAGTCCAGGCATTTT 2725
Query 2896 CCTTAAGCTTGAGAATCTTGAGAAGCTAGGCACCTCAAGCTCTCATGTTTCTCTTTGATA 2955
|||||||||||||| |||||||||||||| ||||||||| |||||||||||||| | |||
Sbjct 2726 CCTTAAGCTTGAGA-TCTTGAGAAGCTAGACACCTCAAGATCTCATGTTTCTCTATAATA 2784
Query 2956 AAGAGGTTGAGAATCACAAAGAGGCTGCTTTAGAA-GA-AATGGTGAGA-T-AGATTA-T 3010
||||||||||||||| |||| |||||||||||||| || |||||||||| | |||| | |
Sbjct 2785 AAGAGGTTGAGAATCTCAAAAAGGCTGCTTTAGAAAGACAATGGTGAGACTGAGATAAAT 2844
Query 3011 -CTC-C-TCATAGGATGATATG-A-GAGAACTCCACTAAGGTAAAAGGACCCC 3058
||| | |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 2845 TCTCTCCTCATAGGATGATATATATGAGAACTCCACTAAGGTAAAAGGACCCC 2897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 154664685269
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5