BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495716
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56260.1 | Symbols: | Ribonuclease E inhibitor RraA/Dimethy... 1328 0.0
> AT5G56260.1 | Symbols: | Ribonuclease E inhibitor RraA/Dimethylmenaquinone
methyltransferase | chr5:22775325-22777304 REVERSE
LENGTH=1013
Length=1013
Score = 1328 bits (719), Expect = 0.0
Identities = 858/923 (93%), Gaps = 17/923 (2%)
Strand=Plus/Plus
Query 1 GTCAATGACCCGACCCGAGAAAAGCGTGTCGGATTGAAAATACCCGCACCGACGAGTTTA 60
||||| || ||||||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct 2 GTCAACGATCCGACCCGAGAAAAGCGGGTCGGATTGAAAATACCCGCACCGTCGGGTTTA 61
Query 61 CGATAGGAGA-ACCAAGTGCCTCTAATGGCACAAGCTTCTATGAGGATTTTTCAGTAAAT 119
|||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 62 CGATAGGAGAGACCAAGTGGCTCTCATGGCACAAGCTTCTATGAGGATTTTTCAGTAAAT 121
Query 120 -G---G-CTGACACTAGGAAGCTGACCTCACTCGCTACTTGGGGTCAatatatatatata 174
| | ||||||| || ||||||||||||||||||||||||| | | | | || |||||
Sbjct 122 GGATAGCCTGACACGAGAAAGCTGACCTCACTCGCTACTTGGGTTGATTGTGTAAATATA 181
Query 175 tGTAAGTATCTTCGTTGAGAAATTGGGACTCTGTTCTGTTGTGGAAAGCCGAAA------ 228
|| ||||||| |||||||||||||||||||||| ||||||| |||||||||||
Sbjct 182 TGAAAGTATCGTCGTTGAGAAATTGGGACTCTGATCTGTTGCAGAAAGCCGAAAGCTTTG 241
Query 229 G-CTTTGGAGCTTTAACCTCTTTCTCTGTACACATACAGAATCTCCCATGGCTGCATTTG 287
| |||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 242 GTCTTTGGAGCTCTAACCTCTGCCTCTGAACACACACAGAATCTCCCATGGCTGCATTTG 301
Query 288 CAACCGCAGAAGCGTGTGACAGCAACGCAGAACTAATATCAAACGGAGACTTATGCGCTC 347
|||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 302 CAACGGCAGAAGCGTGTGACAGCAACGCAGAACTAATATCAAATGGAGACTTACGCGCTC 361
Query 348 TCCACCCAATCTTCAAGATCTATGGCCAAAGAAGATGCTTCTCAGGACCAATCGTGACTC 407
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TTCACCCAATCTTCAAGATCTATGGCCAAAGAAGATGCTTCTCAGGACCAATCGTGACTC 421
Query 408 TCAAGGTCTTTGAAGACAATGTCCTCGTCAGAAACCAACTAGAGACAAAAGGAGAAGGCG 467
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 422 TCAAGGTCTTTGAAGACAATGTCCTCGTCAGAAACCAACTAGAAACGAAAGGAGAAGGCG 481
Query 468 GAGTCTTAGTTATAGACGGTGGTGGAAGCATGAGATGTGCTCTTGTTGGAGGAAACCTCG 527
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 482 GAGTCTTAGTTATAGACGGTGGTGGAAGCATGAGATGCGCGCTTGTTGGAGGAAACCTCG 541
Query 528 GACAGTTAGCTCAGAACAACGGGTGGTCGGGGATTGTTGTGAATGGATGTGTTAGAGATG 587
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 542 GACAGTTAGCTCAGAACAACGGGTGGTCGGGGATTGTTGTGAATGGATGCGTTAGAGATG 601
Query 588 TGGATGAGATCAATGACTGCGATGTTGGGGTCAGGGCCTTGGGATCTAACCCATTGAAGT 647
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 602 TGGATGAGATCAATGACTGCGATGTTGGGGTCAGGGCATTGGGATCTAACCCGTTGAAAT 661
Query 648 CTACTAAGAAAGGTCATGGTGAGAAGAATGTACCTGTTCATATTGGAGGAACTTTGATTA 707
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 662 CTACTAAGAAAGGTCATGGTGAGAAGAATGTGCCGGTTCATATTGGAGGAACTTTGATTA 721
Query 708 GAGATGGAGAGTGGCTATATGCTGATAGTGATGGTATCTTGATCTCCAAGACCGAACTCT 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GAGATGGAGAGTGGCTATATGCTGATAGTGATGGTATCTTGATCTCCAAGACCGAACTCT 781
Query 768 CTGTTTGAGTCAGAAGGTTTCCTTGATAGTGCTAAGAGACTGCAGCTTCTTGAAGCAAGG 827
||||||||||||||| |||||| |||||||||||||||||| |||||||||| |||||||
Sbjct 782 CTGTTTGAGTCAGAACGTTTCCGTGATAGTGCTAAGAGACTACAGCTTCTTGGAGCAAGG 841
Query 828 TGGTTTATTTGAATTCTTA-GTAATCTGTTTAATACTCCAAATAATCATTTCG-TG-CAA 884
||||||||| ||||||||| | ||||||||||||||||||||||||||||| | |||
Sbjct 842 TGGTTTATTCGAATTCTTAAG-AATCTGTTTAATACTCCAAATAATCATTTTTATTACAA 900
Query 885 TATACTTACGTTTTGTGAAATTA 907
|||||||||||||| ||||||||
Sbjct 901 TATACTTACGTTTTATGAAATTA 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44306517654
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5