BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495718
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56280.1 | Symbols: CSN6A | COP9 signalosome subunit 6A | ch... 1740 0.0
AT4G26430.1 | Symbols: CSN6B | COP9 signalosome subunit 6B | ch... 994 0.0
> AT5G56280.1 | Symbols: CSN6A | COP9 signalosome subunit 6A |
chr5:22783384-22785577 REVERSE LENGTH=1234
Length=1234
Score = 1740 bits (942), Expect = 0.0
Identities = 1079/1142 (94%), Gaps = 22/1142 (2%)
Strand=Plus/Plus
Query 1 CAAAGAATTCATCGAAGAGCGAGAGAGA-CAACAATGGCACCTTCGTCATCAAGCGGTTT 59
||||||||||||| ||| | |||||||| | |||||||||||||||||||||||||||||
Sbjct 15 CAAAGAATTCATCAAAG-GAGAGAGAGATCGACAATGGCACCTTCGTCATCAAGCGGTTT 73
Query 60 AACCTTCAAGTTACATCCTTTGGTAATCGTAAACATATCGGACCACTACACTAGGGTCAA 119
|||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 74 AACCTTCAAGCTACATCCTTTGGTAATCGTCAACATATCGGATCACTACACTAGGGTCAA 133
Query 120 AACTCAGCTCAATCCTCCTGCTTCAATCTGCGCAAGCGGGCATGGCTCAAACAACGGCGA 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 134 AACTCAGCTCAATCCTCCTGCTTCAATCTGCGCAAGCGGCCATGGCTCAAACAACGGCGA 193
Query 180 AGCAGTGATCCAGCAAAACCCTAGGGTTTACGGATGTGTGATCGGTGTCCAGAGAGGTCG 239
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 AGCAATGTTCCAGCAAAACCCTAGGGTTTACGGATGTGTGATCGGTGTCCAGAGAGGTCG 253
Query 240 TACTGTTGAGATCTTCAACAGTTTCGAGCTTTTATATGATCCTTCGACTCAAACCCTTGA 299
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 254 TACTGTTGAGATATTCAACAGTTTCGAGCTTTTATATGATCCTTCTACTCAAACCCTTGA 313
Query 300 TAGAGCTTTCCTCGAGAAGAAGCAAGAGCTATATAAGAAGGTGTTCCCTGATTTCTATAT 359
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 314 TAGATCTTTCCTCGAGAAGAAGCAAGAGCTCTATAAGAAGGTGTTCCCTGATTTCTATAT 373
Query 360 TCTGGGATGGTACTCTACGGGAAGTGATGCTGAGGAATCTGATATGCATATCCATAAAGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TCTGGGATGGTACTCTACGGGAAGTGATGCTGAGGAATCTGATATGCATATCCATAAAGC 433
Query 420 TTTGATGGATATCAATGAATCTCCTGTTTATGTGCTTTTAAACCCTGCAATCAATCACGC 479
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 434 TTTGATGGATATCAATGAATCTCCTGTTTATGTGCTTTTAAACCCTGCTATCAATCACAC 493
Query 480 ACAGAAGGATCTTCCAGTGACTATCTATGAAAGTGAATTGCATGTCATTGATGGAATCCC 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 494 ACAGAAGGATCTTCCAGTGACTATTTATGAAAGTGAATTGCATGTCATTGATGGAATCCC 553
Query 540 GCAGCTGATTTTCGTTCATACAAGCTACACAATCGAGACCGTTGAAGCTGAACGGATATC 599
|||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 554 GCAGCTAATTTTCGCTCATACAAGCTACACAATCGAGACAGTTGAAGCTGAACGGATATC 613
Query 600 AGTCGATCATGTTGCACATCTCCAACCATCTGATGGAGGCTCTGCAGCAACCCAGTTGGC 659
||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||||||
Sbjct 614 AGTTGATCATGTTGCACATCTTAAACCATCTGACGGAGGCTCAGCAGCAACCCAGTTGGC 673
Query 660 TGCTCATCTTACTGGTATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TGCTCATCTTACTGGTATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCT 733
Query 720 CTACCAATATCTTGCTGCAATGCAGAAAGATGATAT-TCCTTGTGACAACTCACTTCTGA 778
|||||| ||||||||||||||||||||| ||||| || ||||||||||||| ||||||
Sbjct 734 TTACCAAAATCTTGCTGCAATGCAGAAAGGTGATAAATC-TTGTGACAACTCAGTTCTGA 792
Query 779 GACAAGTATCTAGCCTGCTAAGAAGATTGCCTGCCATGGAATCAGAAAGATTTCAAGATA 838
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 793 GACAAGTATCTAGCCTGCTAAGAAGATTGCCTGCCATGGAATCAGAGAGATTTCAAGATA 852
Query 839 ATTTCTTGATGGAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ATTTCTTGATGGAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATT 912
Query 899 GTTCCAGCAACATGAACGAGATGGTCGACAAATTCAACACCGCGTATGACAGAAACACTC 958
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 913 GTTCCAGCAACATGAACGAGATGGTCGACAAATTCAACACCGCATATGACAGAAACACTC 972
Query 959 GAAGAGGTGGTAGAACTGCATTCATGTAAAAGATTCTCTCTAGCAATT-TAAGTTCTAAA 1017
|||||||||| ||||||||||||||||||||||| || || ||| ||| || ||||||||
Sbjct 973 GAAGAGGTGGAAGAACTGCATTCATGTAAAAGATCCTTTCCAGCGATTCTA-GTTCTAAA 1031
Query 1018 AGATCTTCTCTTGGTTCCTGAAACCATTTTTGTCTTTGTCTCTGTGAGAATC-----C-- 1070
|||||||||||||||||||||||||||||| | ||| ||||||||||||| |
Sbjct 1032 -GATCTTCTCTTGGTTCCTGAAACCATTTTTAACATTGCCTCTGTGAGAATCTATAACTC 1090
Query 1071 -GA----A-GACTTTATCCTCTTCATTGTTTCTATATATATAAGAAACATCTGCTT-TCT 1123
|| | |||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 1091 AGACGGCAAGACTTTATCCTCTTCATTGTTTCTATATCTATAAGAA-CATCTGCTTATCT 1149
Query 1124 AT 1125
||
Sbjct 1150 AT 1151
> AT4G26430.1 | Symbols: CSN6B | COP9 signalosome subunit 6B |
chr4:13354992-13357602 FORWARD LENGTH=1467
Length=1467
Score = 994 bits (538), Expect = 0.0
Identities = 844/989 (85%), Gaps = 31/989 (3%)
Strand=Plus/Plus
Query 20 CGAGAGAGACAACAATGGCACCTTCGTCATCAAGCGGTTTAACCTTCAAGTTACATCCTT 79
|||||| |||||||||||| ||||| || || |||||| | || |||||| ||||||||
Sbjct 224 CGAGAGCGACAACAATGGCGCCTTCTTCGTCGAGCGGTCTCACGTTCAAGCTACATCCTC 283
Query 80 TGGTAATCG-TAAACATATCGGACCACTACACTAGGGTCAAAACTCAGCTCAATCCTCCT 138
|||| || | | |||||||| || |||| ||||||||| ||||||||||| ||||||||
Sbjct 284 TGGTGAT-GCTTAACATATCCGATCACTTCACTAGGGTTAAAACTCAGCTTAATCCTCCC 342
Query 139 GCTTCAATC-TGCGCAAGCGGGCATGGCTCAAACAACGGCGAAGCAG-TGATCCAGCAAA 196
|| | || ||||| | |||| ||||||| ||||||| ||| || | || | | |||||
Sbjct 343 GCCGC-TTCTTGCGCCACCGGGAATGGCTCCAACAACGCCGACGC-GATGTTACTGCAAA 400
Query 197 ACCCTAGGGTTTACGGATGTGTGATCGGTGTCCAGAGAGGTCGTACTGTTGAGATCTTCA 256
||||||||||||| || || || |||||| |||||||||||||||| |||||||||||||
Sbjct 401 ACCCTAGGGTTTATGGCTGCGTCATCGGTCTCCAGAGAGGTCGTACGGTTGAGATCTTCA 460
Query 257 ACAGTTTCGAGCTTTTATAT-GATCCTTCGAC-TCAAACCCTTGATAGAGCTTTCCTCGA 314
||||||||||||| ||| | |||||| | | | | || || || ||| | ||||||||
Sbjct 461 ACAGTTTCGAGCTGATAT-TCGATCCTGC-TCTTGATACTCTCGACAGATCCTTCCTCGA 518
Query 315 GAAGAAGCAAGAGCTATATAAGAAGGTGTTCCCTGATTTCTA--TATTCTGGGATGGTAC 372
|||||||||||| || |||||||||||||||||||| ||||| || | ||||||||||
Sbjct 519 GAAGAAGCAAGAACTCTATAAGAAGGTGTTCCCTGACTTCTACGTA-T-TGGGATGGTAT 576
Query 373 TCTACGGGAAGTGATGCTGA-GGAATCTGATATGCATATCCATAAAGCTTTGATGGATAT 431
|||||||||||||| ||| | |||||||||||||||||||| |||||| ||||||| ||
Sbjct 577 TCTACGGGAAGTGACGCT-ACCGAATCTGATATGCATATCCACAAAGCTCTGATGGACAT 635
Query 432 CAATGAATCTCCTGTTTATGTGCTTTTAAACCCTGCAATCAATCACGCACAGAAGGATCT 491
|||||||||||||| ||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct 636 TAATGAATCTCCTGTGTATGTTCTTTTAAATCCTGCTATCAATCATGCACAGAAGGATCT 695
Query 492 TCCAGTGACTATCTATGAAAGTGAATTGCATGTCATTGATGGAATCCCGCAGCT-GATTT 550
||| ||||||||||| ||||| ||||| ||||||||||||||||| || ||| | |||||
Sbjct 696 TCCTGTGACTATCTACGAAAGCGAATTTCATGTCATTGATGGAATTCCTCAG-TCGATTT 754
Query 551 TCGTTCATACAAGCTACACAATCGAGACCGTTGAAGCTGAACGGATATCAGTCGATCATG 610
|||| ||||| ||||||||||| ||||| |||||||||||| | ||||| || |||||||
Sbjct 755 TCGTGCATACCAGCTACACAATTGAGACAGTTGAAGCTGAAAGAATATCTGTTGATCATG 814
Query 611 TTGCACATCTCCAA-CCATCTGATGGAGGCTCTGCAGCAACCCAGTTGGCTGCTCATCTT 669
|||||||||| || ||||||||||||||||| || || || ||||||||||||||||||
Sbjct 815 TTGCACATCT-TAAGCCATCTGATGGAGGCTCAGCTGCGACTCAGTTGGCTGCTCATCTT 873
Query 670 ACTGGTATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCTCTACCAATAT 729
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 874 ACTGGAATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCTATACCAGCAT 933
Query 730 CTTG-CTGCAATGCAGAAAGATGATATTCCTTGTGACAACTCACTTCTGAGACAAGTATC 788
||| | || |||||||||| ||||| |||||||| |||||| ||||||||||||||||
Sbjct 934 ATTGTC-GCTATGCAGAAAGGTGATAAACCTTGTGAGAACTCAGTTCTGAGACAAGTATC 992
Query 789 TAGCCTGCTAAGAAGATTGCCTGCCATGGAATCAGA-AAGATTTCAA-GATAATTTCTTG 846
||| ||||| ||||| ||||||||| |||||||| ||| || ||| || |||||||||
Sbjct 993 TAGTCTGCTCAGAAGTTTGCCTGCCGCAGAATCAGAGAAG-TT-CAATGAAAATTTCTTG 1050
Query 847 ATGGAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATTGTTCCAGC 906
|||||||||||||||||||| || || |||||||||| ||||| || |||||| |||||
Sbjct 1051 ATGGAGTACAACGACAAATTGCTGATGTCTTACCTAGCAATGATCACGAATTGTACCAGC 1110
Query 907 AACATGAACGAGATGGTCGACAAATTCAACACCGCGTATGACAGAA-ACA-CTCGAAGAG 964
|||||||||||| |||| |||||||||||||| || || |||| || ||| | |||||||
Sbjct 1111 AACATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACA-AACACAGC-CGAAGAG 1168
Query 965 GTGGTAGAACTGCATTCATGTAAAAGATT 993
||||||| ||||| |||||||||| ||||
Sbjct 1169 GTGGTAGGACTGCGTTCATGTAAA-GATT 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56174409855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5