BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495722
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56320.1 | Symbols: ATEXPA14, EXP14, ATEXP14, ATHEXP ALPHA 1... 1279 0.0
AT5G05290.1 | Symbols: ATEXPA2, EXP2, ATEXP2, ATHEXP ALPHA 1.12... 139 5e-32
> AT5G56320.1 | Symbols: ATEXPA14, EXP14, ATEXP14, ATHEXP ALPHA
1.5, EXPA14 | expansin A14 | chr5:22808641-22810237 FORWARD
LENGTH=1203
Length=1203
Score = 1279 bits (692), Expect = 0.0
Identities = 786/831 (95%), Gaps = 7/831 (1%)
Strand=Plus/Plus
Query 23 CtttttttttCTTTCTCCAGGCCATTGTaaaaaaaaGGCAGAGAAAATGGAGATTTTCGG 82
||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||| ||
Sbjct 60 CTTTTTTTTTCTTTCTCCAAGCCATTG-AATAAAAAGGCAGAGAAAATGGAGTTTTTTGG 118
Query 83 -AAAAGTGATAATGTCATTGAGTCTTATGATGATGTTGATGTGGAAGAGTGTGGATGGTT 141
|||| ||||||| ||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 119 TAAAA-TGATAATTTCATTGAGTCTTATGATGATGATAATGTGGAAGAGCGTGGATGGTT 177
Query 142 ACAGTAGTGGTTGGGTCAATGCTCGAGCTACATTCTATGGAGGTGCTGATGCTTCTGGCA 201
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 178 ACAGTAGTGGTTGGGTCAATGCTCGAGCCACATTCTATGGAGGAGCTGATGCTTCTGGCA 237
Query 202 CCATGGGCGGCGCGTGTGGTTACGGGAACTTATACAGTCAAGGCTACGGAACGAACACGG 261
||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||
Sbjct 238 CCATGGGCGGCGCGTGTGGTTACGGAAACTTATACAGTCAAGGATACGGCACTAACACGG 297
Query 262 CGGCTCTAAGCACGGCTCTATTCAACGGCGGCCAAGGCTGCGGCGCTTGTTTTCAGATAA 321
||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||
Sbjct 298 CGGCTCTAAGCACGGCTCTATTCAACGGCGGCCAAAGCTGTGGTGCTTGTTTTCAGATAA 357
Query 322 AATGCGTAAACGACCCAAAATGGTGTCTCCGAGGAACAATCACCGTCACCGGAACAAACT 381
|||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 358 AATGCGTAGACGACCCAAAATGGTGTATCGGTGGAACAATCACCGTCACCGGAACAAACT 417
Query 382 TTTGTCCACCCAACTTTGCTCAAGCCAACAACGCCGGAGGTTGGTGTAATCCTCCTCAAC 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTTGTCCACCCAACTTTGCTCAAGCCAACAACGCCGGAGGTTGGTGTAATCCTCCTCAAC 477
Query 442 ATCACTTCGATTTAGCTCAGCCCATCTTCCTCCGCATCGCTCAATACAAAGCCGGTGTCG 501
| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 478 ACCACTTCGATTTAGCTCAGCCCATCTTCCTCCGTATTGCTCAATACAAAGCCGGCGTCG 537
Query 502 TCCCCGTCCAATACCGGAGAGTGGCTTGCCGGAGAAAAGGAGGAATAAGATTCACGATCA 561
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCCCTGTCCAATACCGGAGAGTGGCTTGCCGGAGAAAAGGAGGAATAAGATTCACGATCA 597
Query 562 ACGGTCACTCATACTTCAACCTCGTACTCATAACCAACGTCGCCGGCGCCGGAGATGTTG 621
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 ACGGTCATTCATACTTCAACCTCGTACTTATAACCAACGTCGCCGGCGCCGGAGATGTTA 657
Query 622 TCTCCGTCTCCATTAAAGGAACCAGA-ACAGGTTGGCAAAGCATGTCAAGAAACTGGGGA 680
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 658 TCTCCGTCTCCATTAAAGGAACCA-ATACACGTTGGCAAAGCATGTCAAGAAACTGGGGA 716
Query 681 CAGAATTGGCAAAGCAACT-CAAATCTTGATGGTCAAGCTTTGTCCTTTAAAGTAACAAC 739
||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 717 CAGAATTGGCAAAGCAA-TGCAAAACTTGATGGTCAAGCTTTGTCCTTTAAAGTAACAAC 775
Query 740 TAGTGATGGCCGTACAGTTGTCTCTAACAATGCTACTCCGCTTAACTGGAGCTTTGGACA 799
||||||||||||||||||| | |||||||||||||| || | |||||||||||| |||||
Sbjct 776 TAGTGATGGCCGTACAGTTATATCTAACAATGCTACACCACGTAACTGGAGCTTCGGACA 835
Query 800 GACTTATACCGGAAAACAGTTCGGGGCTCAGAGGTGATGATGACGTGGACT 850
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 836 GACTTATACCGGAAAACAGTTCCGGGCTCAGAGGTGATGATGACGTGGACT 886
Score = 213 bits (115), Expect = 3e-54
Identities = 168/190 (88%), Gaps = 17/190 (9%)
Strand=Plus/Plus
Query 848 ACTTATTACTGATTTTGGAGTTTTCTAGAGTTTGCATAGTTTGaaaaaaaG-TTTCAGGA 906
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 912 ACTTATTACTGATTTTGGAGTTTTCTAGAGTTTGCATAGTTTG-AAAAAAGTTTTCA-G- 968
Query 907 GTTTATCTGATTAACCCTAATCAAAATAACCAATTTCTGAATGGC-G-----GAGGTTTT 960
| | ||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 969 G---A----ATTAACCCTAATCAAAATAACCAATTTCTAAATGGCGGAAATCGAGGTTTT 1021
Query 961 TTATCACCGGCAGCTTTTGTAATTCGCCGGTGAGACTGAGGTGTTTTCACCCGCCGCTTG 1020
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1022 TTCTCACTGGCAGCTTTTGTAATTCGCCGGTGAGACTGAGGTGTTTTCACCCGCCGCCTG 1081
Query 1021 AGTAATTGAG 1030
||| ||||||
Sbjct 1082 AGTGATTGAG 1091
> AT5G05290.1 | Symbols: ATEXPA2, EXP2, ATEXP2, ATHEXP ALPHA 1.12,
EXPA2 | expansin A2 | chr5:1568694-1569864 FORWARD LENGTH=978
Length=978
Score = 139 bits (75), Expect = 5e-32
Identities = 449/622 (72%), Gaps = 55/622 (9%)
Strand=Plus/Plus
Query 168 GCTACATTCTATGGAGGTGCTGATGCTTCTGGCACCATGGGCGGCGCGTGTGGTTACGGG 227
||||| |||||||| || |||||||| || ||||| ||||| || || ||||| |||||
Sbjct 167 GCTACCTTCTATGGTGGAGCTGATGCATCCGGCACAATGGGTGGTGCTTGTGGGTACGGT 226
Query 228 AACTTATACAGTCAAGGCTA-CGG-AACGAACACGGCGGCTCTAAGCACGGCTCTATTCA 285
|||||| |||| |||||||| || || || || |||||| | ||||||||| | ||||
Sbjct 227 AACTTACACAGCCAAGGCTATGGGCTAC-AA-ACCGCGGCTTTGAGCACGGCTTTGTTCA 284
Query 286 ACGGCGGCCAAG-GCTGCGGCGCTTGTTTTCAGATAAAATGCGTA-AACGACCCAAAATG 343
| | || | || || || || || ||| || || | || | | | || || | ||
Sbjct 285 ATAGTGGGC-AGAAATGTGGGGCCTGCTTTGAGCTACAGTGTG-AGGATGATCCTGAGTG 342
Query 344 GTGTC-TCCGAGGAACAATCACCGTCACCGG-AACAAACTTTTGTCCACCCAACTTTG-C 400
||| | ||| || | |||| |||| ||| |||||||| ||||| || ||||||| |
Sbjct 343 GTG-CATCCCTGGTTCCATCATCGTC-TCGGCTACAAACTTCTGTCCTCCAAACTTTGCC 400
Query 401 TCAAGCCAACAACGCCGGAGGTTGGTGTAATCCTCCTC-AACATCACTTCGATTTAGCTC 459
| ||| || | || |||||||| |||||||||| | | ||||| || || || |
Sbjct 401 T-TAGCTAATGATAATGGTGGTTGGTGCAATCCTCCTCTTA-AGCACTTTGACTTGGC-C 457
Query 460 -AGCCCATCTTCCTCC-GCATCGCTCAATACAAAGCCGGTG-TCGTCCCCGTC-CAATAC 515
|||| |||||||| | |||||||| ||| ||| || | |||| || ||| | ||
Sbjct 458 GAGCCTGCCTTCCTCCAG-ATCGCTCAGTACCGAGCTGG-GATCGTTCCTGTCGC-AT-T 513
Query 516 CGGAGAGTGGCTTGCC--G-GAGAAA--AGGAGGAATAAGATTCACGATCAACGGTCACT 570
| || || || || || | |||||| ||||| ||||| || ||||| ||||| | |
Sbjct 514 CAGA-AG-GG-TT-CCATGTGAGAAAGGTGGAGGGATAAGGTTTACGATAAACGG-GAAT 568
Query 571 -CATACTTCAACCTCGTACTCATAACCAACGTCGCCGGCGCCGGAGATGT-TGTCTCCGT 628
|||| ||| ||||||| || || || || || | || || |||||| | | ||||
Sbjct 569 CCATATTTCGACCTCGTGCTAATCACGAATGTGGGTGGTGCTGGAGATATAAG-GGCCGT 627
Query 629 CTCCATT-AAAGGAAC-CAGA-ACAGGT---TGGCAAAGCATGTCAAGAAACTGGGGACA 682
|| | || ||||| | || | |||| | |||||| |||||||||||||||||||||
Sbjct 628 CT-CTTTGAAAGG--CTCAAAGACAGATCAGTGGCAATCCATGTCAAGAAACTGGGGACA 684
Query 683 GAATTGGCAAAGCAACTCAAATCTT-GATGGTCAA-GCTTTGTCCTTTA-AAGTAACA-A 738
|||||||||||||||| | | || || |||||| || || || ||| |||| || |
Sbjct 685 GAATTGGCAAAGCAACACTTACCTCAGA-GGTCAAAGCCTT-TC-TTTCCAAGTCACTGA 741
Query 739 CTAGTGATGGCCGTACAGTTGT 760
||||||||| || || |||||
Sbjct 742 -TAGTGATGGTCGGACTGTTGT 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50485317735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5