BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495723
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56325.1 | Symbols: | FBD-like domain family protein | chr5... 1221 0.0
> AT5G56325.1 | Symbols: | FBD-like domain family protein | chr5:22812213-22813263
FORWARD LENGTH=865
Length=865
Score = 1221 bits (661), Expect = 0.0
Identities = 780/837 (93%), Gaps = 10/837 (1%)
Strand=Plus/Plus
Query 1 ATGAAGTACCCAGGTGGTGATGAATTTGTCAACAGGCTTATATCAAGTTGTCCAATTCTT 60
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1 ATGAAGTACCCAGGTGGTGATGAATTTTTCAACACGCTTATATCAAGTTGTCCAATTCTT 60
Query 61 GAAGAGTTGGTTGTGAAACAAATCCTCAATGACAATGTGTCCATGGTGACCGTTAGAGTT 120
||||| ||||||||||||||||||||||| |||||| || |||| ||||| ||||||||
Sbjct 61 GAAGACTTGGTTGTGAAACAAATCCTCAACGACAATTTGGCCATTGTGACTGTTAGAGTG 120
Query 121 CCTTCTCTAAAGCGCTTAGTCTTGAACCAAGAAGTAAAAAACGCTGTTAATGGCATAGCT 180
|||||||||||| | |||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 121 CCTTCTCTAAAGAGGTTAGTCTTGAACCAAGAAGTAAAAAACGTTGTTAAAAGCATAGCT 180
Query 181 AATGGGTTTGTGATAAACACTCCTTCTTTGGAGTGCATGGACATTGTTGATCTTACGACT 240
|||||||||||||||||||||||| |||||||||||||| | ||||||||| || ||||
Sbjct 181 AATGGGTTTGTGATAAACACTCCTGCTTTGGAGTGCATGAATATTGTTGATTTTTCGACC 240
Query 241 GGGTGTCACATTGTTGAGAATGATATGCCTAACATTGTAAAGGCAAAAGTCGACATTTTT 300
|||||| |||||||||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct 241 GGGTGTAACATTGTTGAGAGTGATATGCCTAACATTGTGAAGGCAAAAGTTGACATTTTT 300
Query 301 CATCCCCAAACTGAGCAACTTTTGGGTTCTATC-ACTTTAAG-CAAGTATCTTCATCTCT 358
||||| | ||||||||||||||||||||||| | ||||| || |||||||||||||||||
Sbjct 301 CATCCACGAACTGAGCAACTTTTGGGTTCTA-CAACTTT-AGCCAAGTATCTTCATCTCT 358
Query 359 GCTTACCAACCTCAATGAATGTGTCGTATCCTGCTGGTAATGTCTTCAACCGTCTCGTAC 418
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 359 GCTTACCAACCTCAAAGAATGTGTCGTATCCTGCTGGTAATATCTTCAACCGTCTCGTAC 418
Query 419 ATCTAAGGATATGCACATGTGAGACTGAGTGGATTAATCTACTTATGCGTATGCTAAGAA 478
|||||||| ||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 419 ATCTAAGGCTATGCACATGTGAGACTGAGTGGATTAATCTACTTATGCGTTTACTCAGAA 478
Query 479 ATTCCACTAGTTTACGAGTTCTTGAGATTGAACAGGCCCATTTCCTTCGATCTTACCAAC 538
||||| |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 479 ATTCCCCTAGTTTACGAGTTCTTGAGATTGAACAGGTCCATTACCTTCGATATTACCAAC 538
Query 539 CACGACCGTGCTGGAGTGAACCAAGCTCGATACCTGAATGTCTTA-T-ATGCAATCTTGA 596
||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct 539 CACGACCGTGCTGGAGTGAACCAAGCTCGATACCTGAATGTCTTACTCAT--AATCTTGA 596
Query 597 AACCTTCAAATGGGAACATTATTATGGAGCAGAAGAAGAGAAAGAAGTGACGGCATTCAT 656
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 597 AACCTTCAAATGGGAGCATTATTATGGAGCAGAAGAAGAGAAAGAAGTGGCGGCATTCAT 656
Query 657 CTTAAGAAGTTCAATCTGTTTAAAGAAGGCAACTATCATCCCTCATAAGTCTATTTTCCA 716
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 657 CTTAAGAAGTTCAATCTGTTTAAAGAAGGCAACTATCATCCTTCATAGGTCTATTGTCCA 716
Query 717 CGA-GAAGAAACTTGAGATGCACAAGGAATTGTCATTATTGCCAATATGTTCACCAGTTT 775
||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 717 CGACGA-GAAACTTGAGATGAACAAGGAATTGTCATTATTGCCAATATGTTCACCAATTT 775
Query 776 GTCAGCTTGCATTCAGCTGAGGTGATGGTCAGTTTTAGATCAGCTATGTTACAACTT 832
|||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 776 GTCAGCTTGCTTTCAGCTGAGGTTATGGTCAGTTTTAGATCAGCTATACTACAACTT 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41443171275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5