BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495725
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56340.1 | Symbols: ATCRT1 | RING/U-box superfamily protein ... 1975 0.0
AT4G26400.2 | Symbols: | RING/U-box superfamily protein | chr4... 327 1e-88
AT1G55530.1 | Symbols: | RING/U-box superfamily protein | chr1... 111 2e-23
> AT5G56340.1 | Symbols: ATCRT1 | RING/U-box superfamily protein
| chr5:22817560-22819657 FORWARD LENGTH=1635
Length=1635
Score = 1975 bits (1069), Expect = 0.0
Identities = 1321/1437 (92%), Gaps = 40/1437 (3%)
Strand=Plus/Plus
Query 1 ttttgtttccttccactc--t-ttcttcttcatttcctcgttctttc-t-tt-cttctcc 54
|||||||||||||||||| | ||||||||||||||||| ||||||| | || |||||||
Sbjct 1 TTTTGTTTCCTTCCACTCTTTCTTCTTCTTCATTTCCTCTTTCTTTCTTCTTCCTTCTCC 60
Query 55 attttttctcAT-ATCCTTGGACaaaaaa-aTTGAGCCTTTTTCTGGGTTTTATTTTCTA 112
|||||||||| | ||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 ATTTTTTCTC-TAATCGTTGGACAAAAAAGATTGAGCCTTTTTCTGGGTTTTATTTTCTA 119
Query 113 TAAAGGAATCGAAACAAGGAAGAACAGATTTGaaaaaaaaaTTCTTGGGTTTTCAAGAAA 172
|||||||||||||| ||| ||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 120 TAAAGGAATCGAAAGAAGCAAGGACAGATTTTAAAAAAAAAATCTTGGGTTTTCAAGAAA 179
Query 173 AAGTAGAGACATTTTAAAGAATCAAGAGA-TT-TGGGGTTGAAG-GAGGATAGATATGGA 229
||||||||||||||||||||||||| ||| || ||||| ||||| ||| | | |||||
Sbjct 180 AAGTAGAGACATTTTAAAGAATCAATAGATTTGTGGGGGTGAAGTAAGG--A-ACATGGA 236
Query 230 GGAAACAATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAATAAT 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 237 GGAAACAATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAGTAAT 296
Query 290 GGAATCTGAGATCAAATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATGAGCGGTAA 349
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 297 GGAATCTGAGATCAAATGTCCCTTTTGCCAAAGCGGATTCATCGAAGAAATGAGCGGTAA 356
Query 350 TAGCGGTGGAGGTGGTGGCAGAGGCATAAGAGACGTTCAAGATTCAGAAACCGATTTTGG 409
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 357 TGGCGGTGGAGGTGGTGGCAGAGGCATAAGAGATGTTCAAGATTCAGAAACCGATTTTGG 416
Query 410 AACAGACCGTGCATTGTCTCTATGGGCACCAATCTTGCTTGGAATGATGAGTAGTCCTCG 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AACAGACCGTGCATTGTCTCTATGGGCACCAATCTTGCTTGGAATGATGAGTAGTCCTCG 476
Query 470 GAGACGAAGAAGGTTTAGAAGATCAGAGTTTGGTGAAGAGaatgatgataatggtgatga 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAGACGAAGAAGGTTTAGAAGATCAGAGTTTGGTGAAGAGAATGATGATAATGGTGATGA 536
Query 530 attgagta--a-tgctgatgggaatgataat-a-a-taataacagtaat------gTGTA 577
|||| || | |||||||||||||| ||| | | ||| ||||||||| |||||
Sbjct 537 CTTGACTACTAATGCTGATGGGAATGGGAATGATAGTAACAACAGTAATAATAACGTGTA 596
Query 578 TTATCATCATCGAGCTAGGCGGCATGGTGGAGAGATTGATTTGGATAGAGAGTTTGAGTC 637
| |||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||
Sbjct 597 TCGTCATCATCGAGCTAGGAGACATGGTGGAGAGATTGATTTAGATAGAGAGTTTGAATC 656
Query 638 TATCTTGAGGCGAAGACGAAGAAGCTCGGGGAATATATTGCAGTTACTTCAAGGGATTCG 697
|||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 657 TATCTTGAGGAGAAGACGAAGAAGCTCAGGGAATATATTGCAGTTGCTTCAAGGGATTCG 716
Query 698 TGCAGGGATTGCTTCAGAGTATGAAAGTTCTGATAACGATTGGGATAATTCTCGTGAGAG 757
||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |||||
Sbjct 717 TGCAGGGATTGCTTCTGAGTATGAAAGCTCTGATAACAATTGGGATAATTCTCGAGAGAG 776
Query 758 GGATAGAGTTATAATGATCAATCCGTATAACCAATCGCTCGTTGTTCAGGGATCTTCAGA 817
|||||||||||||||||| |||||||||||||||||||| ||||||| |||| ||
Sbjct 777 GGATAGAGTTATAATGATTAATCCGTATAACCAATCGCTAGTTGTTC------CTTCGGA 830
Query 818 TCAAAATCCGAATCATCCTTCATTGACTTCACTTGGAGATTACTTCATTGGACCTGGTTT 877
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TCAGAATCAGAATCATCCTTCATTGACTTCACTTGGAGATTACTTCATTGGACCTGGTTT 890
Query 878 AGATCTTTTGCTTCAGCATTTGGCTGAGAATGATCCTAATAGGCAAGGGACTCCTCCTGC 937
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 891 AGATCTTTTGCTTCAGCATTTGGCTGAGAATGATCCTAATAGGCAAGGGACTCCACCTGC 950
Query 938 TCGTAAAGAAGCGGTTGAAGCTTTGCCAACGGTTAAGATAATGGAACCTTTGCAATGTTC 997
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 951 TCGTAAAGAAGCTGTTGAAGCTTTACCAACGGTTAAGATAATGGAACCTTTGCAATGTTC 1010
Query 998 AGTTTGTTTGGATGATTTTGAGAAAGGAACGGAAGCTAAAGAGATGCCGTGTAAACATAA 1057
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 1011 TGTTTGTTTGGATGATTTTGAGAAAGGTACGGAAGCTAAAGAGATGCCTTGTAAGCATAA 1070
Query 1058 GTTTCATATCCGCTGTATTGT-CCCGTGGCTTGAGCTTCATAGTTCTTGTCCTGTGTGTC 1116
||||||| | || |||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1071 GTTTCATGTTCGGTGTATTGTTCCC-TGGCTTGAGCTTCATAGTTCTTGTCCTGTGTGTC 1129
Query 1117 GATTCGAGCTTCCTTCTAGTGCTGATGATGATGATGAGACAAAGATTGATTCTGAGAGAC 1176
| || ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||
Sbjct 1130 GTTTTGAGCTTCCTTCTAGTGCTGATGATGATGATGAGACTAAGACTGATTCCGAGAGAG 1189
Query 1177 CGCCGAGGACAAGAAATGTTGGGGAAAGCAA-TAACAGAAACATTGTTGAGAATGTAGGA 1235
|| ||| |||||||||||| |||||| | | |||| ||||| ||||||||||||| |||
Sbjct 1190 TGCTGAGAACAAGAAATGTTCGGGAAA-CGAGTAACGGAAACGTTGTTGAGAATGTGGGA 1248
Query 1236 AATGCGGAAAGAGGAAGACAGGATGAGGCGAGGAGCGGTAATGGAAGACGGTTTTCGTTT 1295
|||||||| ||||||||| ||||||||| |||||| || ||||| |||||||||||||||
Sbjct 1249 AATGCGGATAGAGGAAGAGAGGATGAGGTGAGGAGTGGAAATGGGAGACGGTTTTCGTTT 1308
Query 1296 CCATGGCCATTCAGTGGATTAttctcgtcttcttcttcgtcttcgtcttcttcATCCTCA 1355
|||||||| || |||||||| ||||||||||||||||| | | ||||||||||| ||||
Sbjct 1309 CCATGGCCGTTTAGTGGATTGTTCTCGTCTTCTTCTTC-T-T-CGTCTTCTTCAACCTCT 1365
Query 1356 GGATCTCAATCTGGTGAGAACAATTTCTACTCAAGATCTTCCGGTTCTTCTCGCTGA 1412
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1366 GGATCTCAATCTGGTGAGAACAATTTCTTCTCAAGATCTTCTGGTTCTTCTCGCTGA 1422
Score = 204 bits (110), Expect = 3e-51
Identities = 132/142 (93%), Gaps = 3/142 (2%)
Strand=Plus/Plus
Query 1432 GTTTTCTCA-TTTCCTAGCTCTTGAATTTGTTATTTCCTATGCATTTCATTCTCTGCTTT 1490
||| ||||| ||| |||||| ||||| |||||||||||| ||||||||||||||||| ||
Sbjct 1483 GTTCTCTCATTTTTCTAGCTATTGAACTTGTTATTTCCTCTGCATTTCATTCTCTGC-TT 1541
Query 1491 TA-TGTACATAAAAATGATGTTCTTTCACTCAGACTGTTGAAAAACAAATATCCATTGTT 1549
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 TACTGTACATAGAAATGATGTTCTTTCACTCAGACTGTTGAAAAACAAATATCCATTGTT 1601
Query 1550 GCTGTACAGAGATGATCAAATT 1571
| ||||||||||||||||||||
Sbjct 1602 GGTGTACAGAGATGATCAAATT 1623
> AT4G26400.2 | Symbols: | RING/U-box superfamily protein | chr4:13344848-13346574
REVERSE LENGTH=1390
Length=1390
Score = 327 bits (177), Expect = 1e-88
Identities = 424/537 (79%), Gaps = 41/537 (8%)
Strand=Plus/Plus
Query 216 AGGATAGATATGGAGGAA-A--CAATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAA 272
|||| ||| | ||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 193 AGGAAAGA-A-GGAGGAAGAGGCAATGTCAGCTAGGTATTGGTGTCACATGTGTTCACAA 250
Query 273 ATGGTGAATCCAATAAT-GGAATCTGAGATCAAATGTCCCTTTTGTCAAAGCGGATTCAT 331
|||||||||||| | || || | ||||||||||| |||||||| |||||||| || |
Sbjct 251 ATGGTGAATCCAGTTATTGGTGCC-GAGATCAAATGCCCCTTTTGCCAAAGCGGGTTTGT 309
Query 332 CGAAGAAATGAGCGGT-A-AT-AGCGGTGG-AGGTGGTGGCAGAGGCATAAGAGACGTTC 387
||| ||||||||| || | || | || || || | | |||| | |||| || ||||
Sbjct 310 CGAGGAAATGAGCCGTGAGATTAATGGCGGCAGCAG-TAGCAGT--C-TAAGGGAGGTTC 365
Query 388 AAGATTCAGAAACCGATTTTGGAACAGACCGTGCATTGTCTCTATGGGCACCAATCTTGC 447
|||| | || | |||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 366 AAGACCCTGAGATTGATTTTGGTACAGACCGTGCATTGTCTCTATGGGGTCCAATCTTGC 425
Query 448 TTGGAATGATGAGTAGTCCTCGGAGACGAAGAAGGTTTAGAAG-ATCAGAGTTTGGTGAA 506
||||||||||||||| |||||| ||||| ||||||||||| || | ||||||||||||
Sbjct 426 TTGGAATGATGAGTAATCCTCGTAGACGTAGAAGGTTTAGGAGGA-CAGAGTTTGGTGTG 484
Query 507 GAGaatgatgataatggtga-tgaat-tgagtaatgctgatgggaatgataa--ta-ata 561
|| |||||||| ||| | || || ||| | ||| |||||| ||||| | | |||
Sbjct 485 GATAATGATGA----GGTCAATGTATCTGA-TGATGTTGATGGAAATGACAGCGTCGATA 539
Query 562 ataa-cagta-atg-TGTATTATCATCATCG--AGCTAGGCGGCATGGTGGAGAGATTGA 616
| | | | | || | || || |||||| | | |||| || ||| ||||||||||
Sbjct 540 TTGATC-G-ACATCATC-ATCGTCGTCATCGCCA-C-AGGCAACAAGGTAGAGAGATTGA 594
Query 617 TTTGGATAGAGAGTTTGAGTCTATC-TTGAGGCGAAGACGAAGAAGCTCGGGGAATATAT 675
||| || |||||||||||||||||| || ||| | ||||| |||||||| | | |||||
Sbjct 595 TTTAGACAGAGAGTTTGAGTCTATCCTT-AGGAGGAGACGGAGAAGCTCAGCTACTATAT 653
Query 676 TGCAGTTACTTCAAGGG-ATTCGTGCAGGGATTGCTTCAGAGTATGAAAGTTCTGAT 731
||||||| ||||| ||| |||||||||||||||||||| |||||||| || || |||
Sbjct 654 TGCAGTTGCTTCA-GGGTATTCGTGCAGGGATTGCTTCTGAGTATGAGAGCTCGGAT 709
> AT1G55530.1 | Symbols: | RING/U-box superfamily protein | chr1:20729182-20731283
REVERSE LENGTH=1650
Length=1650
Score = 111 bits (60), Expect = 2e-23
Identities = 85/97 (88%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 246 AGGTATTGGTGTCACATGTGTTCACAAA-TGGTGAATCCAATAATGGAATCTGAGATCAA 304
|||||||||||||| |||||||| |||| | ||||||||| | |||||| ||||||||||
Sbjct 326 AGGTATTGGTGTCATATGTGTTCTCAAACT-GTGAATCCAGTCATGGAAGCTGAGATCAA 384
Query 305 ATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATG 341
|||||||||||||||||| || || | |||||||||
Sbjct 385 ATGTCCCTTTTGTCAAAGTGGGTTTGTTGAAGAAATG 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77559842025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5