BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495728

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56368.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   405    1e-112


> AT5G56368.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr5:22833964-22834645 FORWARD LENGTH=282
Length=282

 Score =  405 bits (219),  Expect = 1e-112
 Identities = 261/282 (93%), Gaps = 0/282 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTAAGGCCACTTCTTACATTGCCCTCACTTATCTTCTTGCATCTGCATTATTAACT  60
            |||||||| |||||||||| |||||||||| ||||||||||||||||||| ||| | |||
Sbjct  1    ATGGCTAATGCCACTTCTTTCATTGCCCTCGCTTATCTTCTTGCATCTGCGTTAATGACT  60

Query  61   ACGGTGACGCTTGAGAATCGTCAATGTGTACAAGGCATGGATTGCACCGACGTTTGTTCA  120
            ||||||  ||||| |||||| ||||||||||||| ||||||||||||  |||||||||||
Sbjct  61   ACGGTGGTGCTTGGGAATCGGCAATGTGTACAAGCCATGGATTGCACAAACGTTTGTTCA  120

Query  121  CACGGTGGTCTCTGCACCGAAAATGGTAAGTGTGTTTGTTGGTCGCCAAACGCAGTGATC  180
            |||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||
Sbjct  121  CACGGTGGTCTCTGCACCAAAAACGGTAAGTGTGTTTGTTGGTCGCCAAACGTAGTGATC  180

Query  181  AACAGCGGACCGCCGTGCTGGTCAGACGAAATGTGCTTTAGTACATGCGGTGGAAATGGT  240
            ||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct  181  AACAGCGGACCTCCGTGCTGGTCGGATGAAATGTGCTTTAGTACATGTGGTGGAAATGGT  240

Query  241  GGTTATTGTAACTATGATATTGGAGGATGTTACTGCCAATGA  282
            ||||||||||||||||||||||||||||||| ||||||||||
Sbjct  241  GGTTATTGTAACTATGATATTGGAGGATGTTTCTGCCAATGA  282



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12969079242


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5