BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495730
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56370.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 1853 0.0
> AT5G56370.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:22835982-22837941 REVERSE LENGTH=1601
Length=1601
Score = 1853 bits (1003), Expect = 0.0
Identities = 1225/1329 (92%), Gaps = 27/1329 (2%)
Strand=Plus/Plus
Query 2 CAGCAAAATCC-TTAGATTAAAAGATTGGAGAGCTATATGGACAGTATCAGTTTGTTGCC 60
|||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 82 CAGCAAAA-CCATTAGATTAAAAGATTGGAGAGCTATATGGACAGTATAAGTTTGTTGCC 140
Query 61 CGATGATTTCCTCTTGCAG-ATACTGTCATTGCTTCCTACAAAAGATGTCTTGAACACTA 119
||||||||||||||||| | |||||||||||||||||||||||||| || ||||||||||
Sbjct 141 CGATGATTTCCTCTTGC-GCATACTGTCATTGCTTCCTACAAAAGACGTGTTGAACACTA 199
Query 120 GTGTTTTGTCTAAACGATGGCGGTATCTGTGGAAGTTGGTGCCTAAACTTCAGTACATCG 179
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
Sbjct 200 GTGTTTTGTCTAAACGATGGCGGTATCTTTGGAAGTTGGTGCCAAAACTTCAGTACAGCC 259
Query 180 ATATCGATGAGAATGCTGATCATGGGATATTTGTGCGGTTTGTGGATAGATCATTGCTAC 239
||||||| |||||||||||||||||| |||||||||||||||||| ||||| |||||||
Sbjct 260 TTATCGATAAGAATGCTGATCATGGGACATTTGTGCGGTTTGTGGACAGATCGTTGCTAC 319
Query 240 TTAGCATGGCTCCGGTTTTAGAGAGTTTACAATTCAAGTTACGTCGACAATGCAGCGATG 299
||||||||||||||||||||||||||||||| || |||||| |||||||||||||||| |
Sbjct 320 TTAGCATGGCTCCGGTTTTAGAGAGTTTACATTTAAAGTTAGGTCGACAATGCAGCGAAG 379
Query 300 TAGATATCGGGTTTTGGGTTAGAATTGCAGTGGAACAAGGTTTGCGTGAGCTAAATTTCG 359
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 380 TAGATATCGGGTTTTGGGTTAGAATTGCAGTGGAAAAAGGTTTGTGTGAGCTAGATTTCG 439
Query 360 ATTATGAGCATTATCAA-ATTGTGCCTTGCAGATTGCCTCAGAGCTTGTTCACATGTGGA 418
|||||||||||||| || | || ||||||||||||||||||||||||||||||||| |||
Sbjct 440 ATTATGAGCATTAT-AAGACTGAGCCTTGCAGATTGCCTCAGAGCTTGTTCACATGCGGA 498
Query 419 ACACTCGTGGTGCTAAAACTTAAAAACGTATCGCTTAAGGATGTACAATTCCCGGTATGT 478
|||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 499 ACACTCACGGTGCTAAAACTAAAAAACGTATCGCTCAAGGATGTACAATTCCCGGTATGT 558
Query 479 TTTAAGTTGCTCAAAACGCTGCACCTGGAGTCTGTGATTTTCCTGGACGATGAATCTCCT 538
||||||||||||||||||||||||||||||| |||||||||||| ||| | ||| |||||
Sbjct 559 TTTAAGTTGCTCAAAACGCTGCACCTGGAGTATGTGATTTTCCTAGACAAGGAAACTCCT 618
Query 539 AAGAAGCTTTTATCAAGCTGCCCTATTCTTGAAGTCTTGGATTTGACTCGAGAGGACGAC 598
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 619 CAGAAGCTTTTATCAAGCTGCCCTATTCTTGAAGTCTTTGATTTGACTCGAGATGACGAC 678
Query 599 GACGTTGACAATGTGACGAGTTTCTCTGTTATGGTGCCTTCGTTACAAAGATTGATCTAT 658
|||||||| ||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 679 GACGTTGATAATGTTATGAGTTTCTCTGTTATGGTGCCTTCGTTACAAAGATTTATCTAT 738
Query 659 AATGGAGGATTTGGTGCTGAGCTTGTGATGAATACGCCTTCTTTGAAGTACTTTAAGACT 718
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 739 TGTGGAGGATCTGGTGCTGAGCTTGTGATGAATACGCCTTCTTTGAAGTACTTAAAG-CT 797
Query 719 TT-AGATTGTGGTTCCGAGTGTATGATTGAGTATTTGCCTGAGATTGTGGAAGCACATGT 777
|| || |||||||| |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 798 TTCAGGTTGTGGTTACGAGTGTATGATTGGGAATTTGCCTGAGATTGTGGAAGCACATGT 857
Query 778 TGAGGTTACATGTTCCAACACTGATGATATCCTCAAATCTCTTGCATCAGTCAAACGCCT 837
||||||| ||||||||| | |||||||||||| | ||||||||||||||||||||||||
Sbjct 858 TGAGGTTGCATGTTCCA-C--TGATGATATCCTTACATCTCTTGCATCAGTCAAACGCCT 914
Query 838 CTTGTTATGTTTACCCTCAGAGCCTGAGTTACCTACTGGTAGTATCTTCCACCAGCTTGA 897
|||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 915 CTTGCTATGTTTACCCACAGAGCCTGAGTTACCTACTGGTACCATCTTCCACCAGCTTGA 974
Query 898 ACACTTGGAGTTTTGCACTTGT-GACACAGAATGGGATCTACTTATGTTTATGCTCAAAC 956
||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||||
Sbjct 975 ACACTTGGAGTTTTGTTCTTGTTG-CACAGAATGGGATATACTTATGTTTATGCTCAAAC 1033
Query 957 ATTCCCCGAAACTTCGATCTCTCATGCTTAACGATGTAAGTATAACCCATGGCTACACTA 1016
|||||||||||||||||||||||| ||||||||| | | |||| ||||||||||
Sbjct 1034 ATTCCCCGAAACTTCGATCTCTCAAGCTTAACGA-G-A-------CCCACGGCTACACTA 1084
Query 1017 TTGTTTCTCAAAGT---CCTATGTTTCATTGGGAGGAACCAAACTCTGTTCCTGAAACAT 1073
|||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 1085 TTGTTTCTCAAAGTGATCCTATGTTTCATTGGGAGGAACCAAGCTCGGTTCCTGAAACTT 1144
Query 1074 TGATGTTTGTTCTTGAGACTTTAGAGTGGAGAAACTACAGAGGGTGGAAGATAGAGAAA- 1132
|||||||||||||||||||||| |||||||||||||||||||||| |||||| || |||
Sbjct 1145 TGATGTTTGTTCTTGAGACTTTGGAGTGGAGAAACTACAGAGGGTTGAAGATGGA-AAAC 1203
Query 1133 GAACTCGCAAGTTTTATCTTGAAACATTCAAGGCGTCTAAAGATCGCAACCTTTTCGCCA 1192
||||||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 1204 GAACTCGCAAGTTTTCTCTTGAAACATTCAAGACGTCTGAAGATTGCAACCTTTTCGCCA 1263
Query 1193 GCAGACTGCACACAAGTAAGAATGGAATTACGTACGACAGTTGGAATGAAATATCGTATT 1252
|||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1264 GCAGACTGCAAACAAGTGAGAATCGAATTACGTACGACAGTTGGAATGAAATATCGTATA 1323
Query 1253 CTCACGGAATTGGCGCGTTTGCCGAGGGGTTCAGCAGAGTGTGAGTTTGTTTTTGGTTAA 1312
|||| |||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct 1324 CTCATGGAATTGGCGCGTTTGCCAAGGGGTTCAGCAGAGTGTGAGCTTGTGTTTGGTTAA 1383
Query 1313 CTAAGCTTT 1321
||||||||
Sbjct 1384 GTAAGCTTT 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5