BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495733
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56430.1 | Symbols: | F-box/FBD-like domains containing pro... 1382 0.0
> AT5G56430.1 | Symbols: | F-box/FBD-like domains containing protein
| chr5:22853323-22854575 REVERSE LENGTH=1083
Length=1083
Score = 1382 bits (748), Expect = 0.0
Identities = 976/1083 (90%), Gaps = 28/1083 (3%)
Strand=Plus/Plus
Query 6 AAATATAAGTGATTTGTCTAACGATTTGCTGGTTAAGATTTTGTTATTAATTCC-TTCAA 64
|||||| ||||||||| |||||||||||||||| |||||||||| ||||||||| | ||
Sbjct 6 AAATATCAGTGATTTGCCTAACGATTTGCTGGTGAAGATTTTGTCATTAATTCCGAT-AA 64
Query 65 AAGTTGCTGTGTCTACAAGTCTTTTGTCCAAACGATGGGGTTCTGTTTGGAAATTGATTC 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 AAGTTGCTGCGTCTACAAGTCTTTTGTCCAAACGATGGGGTTCTGTTTGGAAATTGATTC 124
Query 125 CGAAGCTTGATTATGACGATACATATAGTGCTTCAGCATCAGAGTTTATCGGAAACTTAT 184
||| |||||| ||||||| ||||||||||||| |||| | ||||||| ||||||| || |
Sbjct 125 CGACGCTTGACTATGACGGTACATATAGTGCTGCAGCTTTAGAGTTTTTCGGAAAGTT-T 183
Query 185 ACACACATGAAACCCTTGTGGTTTTACGTC-TCATGAAAGTGACCATTGACGATGTTCCT 243
||| |||||||||| |||||| | | |||||| |||||||||| ||||||| |
Sbjct 184 ---CAC-----ACCCTTGTGGCTTTACG-CTTTATGAAATTGACCATTGAGGATGTTCAT 234
Query 244 TCGACAACTTGTTTCCGGTCCCTCAAGACTTTGTCTCTTCTAGATGTGTTCTTCACAAGC 303
||||||||||||||||||||| |||||| ||| |||||||||||||| ||| |||||
Sbjct 235 TCGACAACTTGTTTCCGGTCCGTCAAGAATTTATCTCTTCTAGATGTAAAGTTCTCAAGC 294
Query 304 GATAAAACCGTTGAGAGGCTTTTGTCTTGTTTCCCTATTCTTGAAACATTGGTTGTGGAC 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 295 GATAAAACCGTTGAGAGGCTTTTGTCTTGTTTCCCTATTCTTGAAACATTGGTTGTGCAC 354
Query 364 CGATGGGGCGGC-GAAAATGTGAAGACTTTCGCAATTTGTGTGCCATCGTTGCAGAGCTT 422
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CGATGGGGCG-CTGACAATGTGAAGACTTTCGCAATTTGTGTGCCATCGTTGCAGAGCTT 413
Query 423 AAAGATCCGCTACAGAGTAGGGGGTTATCACGATCCAAAAAATGATCATGGATTTGTCAT 482
||| |||||||||| |||||||||||||||| ||||||||| ||||||||||||||| ||
Sbjct 414 AAACATCCGCTACACAGTAGGGGGTTATCACAATCCAAAAACTGATCATGGATTTGTGAT 473
Query 483 CAATGCTCCTTCTTTAAAGTATTTAGATATTGTTGATCATTTTAGTGGGTTTTATTCTTT 542
||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 474 CAATGCTCCTTCTTTAAAGCATTTAGATATTGTTGATCATTTTAGTGGGTTTTGCTCATT 533
Query 543 AGTGAATATGCCCGAGCAATTGGATGCAGAAATCCACGTTAGACAT-TGTGATTCTGAGA 601
||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct 534 AGTGAATATGCCCGAGCAATTGGATGCAGAAATCCACCTTAGACATAT-TGATTCTGAGA 592
Query 602 CGCTTCTAGGATA-TCTTACCTCGTCTAAAAAACTTTCCTTATGTTTAAAACCACAAATG 660
|||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 593 AGCTTCT-GGAAAGTCTTACCTCGTCTAAAAAACTTTCCTTGTGTTTAAAACCACAAACG 651
Query 661 GGTTCATATCCGGAAGGCGACTTTGATCAGCTTGTGTCTCTTGACCTATGTGTTATGTGC 720
||||||||||||| ||| |||||||| ||||| |||| ||| || |||||||||||||||
Sbjct 652 GGTTCATATCCGGGAGGAGACTTTGACCAGCTCGTGTGTCTAGAGCTATGTGTTATGTGC 711
Query 721 TCCTTAGATTGGTTGAATCTTATCCTAAGCCGTTCACCTAAACTCCGAGCTCTCAGACTC 780
|||||||||||||||||||||||||| || |||||||||||||||||| |||||| ||||
Sbjct 712 TCCTTAGATTGGTTGAATCTTATCCTCAGACGTTCACCTAAACTCCGATCTCTCAAACTC 771
Query 781 TACCAATCAAGAGAGAGAGGCGGGAGCTGCCGGAATTCTAGAA-ATGTCCGTACCAAGTG 839
|||||||||||||||||| | |||||||| ||||||| | || |||||||||| || ||
Sbjct 772 TACCAATCAAGAGAGAGAAACTGGAGCTGCAGGAATTCCA-AACATGTCCGTACTAAATG 830
Query 840 GGAGCAACCGAGTTCTGTTCCTGAATGCTTACTTGTGAGTCTCAAAACTGTTGAGTGGAT 899
||||||||| | ||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 831 GGAGCAACCCAATTCTGTTCCTGAATGCTTACTTGTGAGTCTCGAAACTGTTAAGTGGAT 890
Query 900 TTTGTACAAAGGGACACAAGAAGAGAAGGATGTGGTAAAGTATTTGTTAGAGAATGGAAA 959
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 891 TTTGTACAAAGGGACACAAGAAGAGAAGGATGTGGTGAAGTATTTGTTAAAGAATGGAAA 950
Query 960 CTTCATAAAAACTATGAGTATTGGATTCTCATCAGTAATCACGTTGGAAGAGAGAAACAA 1019
||||||||| |||||||||||| |||||||||||||| |||||||||||||||||| | |
Sbjct 951 CTTCATAAAGACTATGAGTATTCGATTCTCATCAGTAGTCACGTTGGAAGAGAGAATCCA 1010
Query 1020 AATAC-AGTTGGAGTTTGAGT-CTATGCCAAGGAGT--T-CTAGAAGATGTCAGCTTTCA 1074
|||| | | ||||||||||| | ||| ||||| | | | || |||||||||||||||
Sbjct 1011 CATACCAAT-GGAGTTTGAGTTC-ATGGGAAGGATTAATTCCAGCAGATGTCAGCTTTCA 1068
Query 1075 TTC 1077
|||
Sbjct 1069 TTC 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5