BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495734
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56450.1 | Symbols: | Mitochondrial substrate carrier famil... 2388 0.0
> AT5G56450.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr5:22858509-22860062 REVERSE LENGTH=1554
Length=1554
Score = 2388 bits (1293), Expect = 0.0
Identities = 1477/1561 (95%), Gaps = 31/1561 (2%)
Strand=Plus/Plus
Query 1 CTTTATCTCGTTGTGGCTTGAGTTCGAATCCACGCAAGGAACCAAAGCATCTCCATCATC 60
||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 10 CTTTATCTCGTTGTGGCTTGAGTTCGAATCCACGCAAGGAACC--A--A-----ATCATC 60
Query 61 TCCAACAAAGATATCTCTGTCTTTCTTTTTGTGATTCTTAATCGTCGCTTGAGGTTTTGG 120
|||| ||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 61 TCCAGCAAAGATATCTCTTTCTTTCTTTTTCTGATCCTTAATCGTCGCTTGAGGTTTTGG 120
Query 121 TTTTCTCTTTATGGGAATTTCTAGGGTTTTCTTGATTTCCCCTGTTTCTTTGGAATCTAC 180
|||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||
Sbjct 121 TTTTCTCTTTATGGGAATTTCTAGGGGTTTCTAAATTTTCCCTGTTTCTTTGGAATCTAC 180
Query 181 AAGTTGTTTCGTTCCCGCCGAGATAATGTCGGATTGAGCAATTCGAATCGAACCCATTT- 239
||||||||||||| | || | |||||||| ||||||| |||||||||| |||||||||
Sbjct 181 AAGTTGTTTCGTT--C-CCAATATAATGTCAGATTGAGAAATTCGAATCAAACCCATTTC 237
Query 240 CCAGATTTGGTGTTTTTCGTTCAAAGATCGAGACTTTGTG-----T--CT---TCTTCGA 289
||| ||||| |||||||| |||||||||||| |||||||| | || | ||| |
Sbjct 238 CCA-ATTTGTTGTTTTTCATTCAAAGATCGAAACTTTGTGTTTATTGACTGCATTTTCAA 296
Query 290 AGATGTGCATTTCAAAAGAAGAC---GAAGATCCATCAAGAAATCGAAGGAATCAATCAC 346
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 297 AGATGTGTATTTCAAAAGAAGACGAAGAAGATCCATCAAGAAATCGAAGGAATCAATCAC 356
Query 347 CATTATCGCTTCCTCAAACTCTGAAACATTTCCAAAAAGATTTGCTTGCTGGTGCTGTAA 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CATTATCGCTTCCTCAAACTCTGAAACATTTCCAAAAAGATTTGCTTGCTGGTGCTGTAA 416
Query 407 TGGGAGGTGTTGTTCACACGATCGTGGCACCAATCGAAAGAGCGAAGCTTTTACTGCAGA 466
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 417 TGGGAGGTGTTGTTCACACGATCGTGGCACCAATCGAAAGAGCCAAGCTTTTATTGCAGA 476
Query 467 CACAAGAGAGCAATATCGCAATCGTTGGAGACGATGGTCACGCAGGGAAGAGAAGGTTTA 526
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 477 CACAAGAGAGCAATATCGCAATCGTTGGAGACGAAGGTCACGCAGGGAAGAGAAGGTTTA 536
Query 527 AAGGAATGTTTGATTTTATCTTCCGTACTGTTAGAGAAGAAGGTGTTTTATCTTTATGGA 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AAGGAATGTTTGATTTTATCTTCCGTACTGTTAGAGAAGAAGGTGTTTTATCTTTATGGA 596
Query 587 GAGGCAATGGAAGCAGTGTGCTTCGTTATTATCCTTCAGTTGCTCTTAATTTCTCTCTTA 646
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 597 GAGGCAATGGAAGCAGTGTGCTCCGTTATTATCCTTCTGTTGCTCTTAATTTCTCTCTTA 656
Query 647 AGGATCTATATAGAAGCATTCTTAGAAACAGTAGCTCTCAAGAGAATCATATCTTCTCTG 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AGGATCTATATAGAAGCATTCTTAGAAACAGTAGCTCTCAAGAGAATCATATCTTCTCTG 716
Query 707 GTGCATTAGCTAATTTCATGGCTGGTTCTGCAGCTGGTTGTACTGCTTTGATTGTTGTTT 766
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 717 GTGCATTAGCTAATTTCATGGCTGGTTCTGCTGCTGGTTGTACTGCTTTGATTGTTGTTT 776
Query 767 ATCCGCTAGATATCGCACACACTCGATTAGCTGCTGACATTGGGAAGCCTGAAGCTCGTC 826
||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 777 ATCCGCTTGATATCGCGCATACTCGTTTAGCTGCTGACATTGGGAAGCCTGAAGCTCGTC 836
Query 827 AGTTTAGAGGAATCCATCATTTCTTGTCGACGATTCATAAGAAAGATGGGGTTAGAGGAA 886
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 837 AGTTCAGAGGAATCCATCATTTCTTGTCAACGATTCATAAGAAAGATGGGGTTAGAGGAA 896
Query 887 TCTATAGAGGCTTACCTGCGTCTCTACATGGCGTGATTATTCACCGTGGCTTGTACTTTG 946
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 897 TCTATAGAGGCTTACCTGCGTCTCTACATGGTGTGATTATTCACCGTGGCTTATACTTTG 956
Query 947 GAGGGTTTGATACGGTTAAGGAGATTTTCTCAGAGGATACTAAACCAGAGTTGGCACTGT 1006
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 957 GAGGGTTTGATACAGTTAAGGAGATTTTCTCAGAGGATACTAAACCTGAGTTGGCATTGT 1016
Query 1007 GGAAGAGATGGGTTTTGGCGCAAGCTGTGACTACATCTGCTGGATTGGCTTCTTACCCGT 1066
|||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1017 GGAAGAGATGGGGTTTGGCTCAAGCTGTGACTACATCTGCTGGTTTGGCTTCTTACCCGT 1076
Query 1067 TGGATACAGTTCGTAGACGGATAATGATGCAATCCGGAATGGAGCATCCAATGTACCGTA 1126
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1077 TGGATACAGTTCGTAGACGGATAATGATGCAATCCGGGATGGAGCATCCGATGTACCGTA 1136
Query 1127 GCACATTGGATTGTTGGAAGAAGATATATAGGAGTGAAGGGTTGGCTTCTTTTTACCGTG 1186
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1137 GCACATTGGATTGTTGGAAGAAGATATATAGGAGTGAAGGGTTGGCTTCGTTTTACCGTG 1196
Query 1187 GAGCACTCTCTAATATGTTTAGGAGCACGGGTTCGGCTGCTATCTTGGTTTTTTATGATG 1246
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1197 GAGCACTCTCTAATATGTTTAGGAGCACCGGTTCGGCTGCTATCTTGGTTTTTTATGATG 1256
Query 1247 AAGTGAAGAGGTTCTTGAATTGGGGAGGGATCTAAGATTAAAAAGCTGAGAGGTAAGCTT 1306
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1257 AAGTGAAGAGGTTCTTGAATTGGGGAGGGATCTAAGATTAACAAGCTGAGAGGTAAGCCT 1316
Query 1307 TGTCAATCCAAATTAGAGACAGAAGAAGAATGATTATTCATTTTGTTACTACACCTTAAC 1366
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1317 TGTCTATCCAAATTAGAGACAGAAGAAGAATGATTTTTCATTTTGTTACTACACCTTAAC 1376
Query 1367 AAGGAGACATATGTAGAGAGAAAGCTTTTAGGTGATAATATTCGTTTTACCGTATTCGGT 1426
| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1377 ATGGA--CATATGTAGAGAGAAAGCTTT-AGGTGATAATATTCGTTTTACCGTATTCAGT 1433
Query 1427 TTTGAGGATTTGGCTGGAACACTATGCATCTTGATTCTTTTCTTCTTGTTATAGACTTTG 1486
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1434 TTTGAGGATTTGGCTGAAACACTATGCATCTTGATTCTTTTCTTTTTGTTATAGACTTTG 1493
Query 1487 TGTGTATGAGGGAAGAAAAA-GAAGGAATCCATTTTGTAAATAAAAGACATGGATTGGTC 1545
||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1494 TGTGTATGAGGAAAGAAAAAAGAAGGAATCTATTTTGTAAATAAAAGACATGGATTGGTC 1553
Query 1546 T 1546
|
Sbjct 1554 T 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76304828400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5