BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495735
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56452.1 | Symbols: | FBD-like domain family protein | chr5... 704 0.0
AT4G00160.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 63.9 2e-09
> AT5G56452.1 | Symbols: | FBD-like domain family protein | chr5:22860450-22861818
REVERSE LENGTH=1199
Length=1199
Score = 704 bits (381), Expect = 0.0
Identities = 550/627 (88%), Gaps = 29/627 (5%)
Strand=Plus/Plus
Query 8 ATAAGATTGTGATCAATGTACCATCTCTGAAGTACTTGAACTTTGAAGATTTCTATGGTC 67
||| ||||||||| ||||| ||||||||||||||||||| ||| | ||||||| ||||
Sbjct 562 ATATGATTGTGATTAATGTCCCATCTCTGAAGTACTTGAGCTTAGTAGATTTCAATGG-- 619
Query 68 ATGACT-TGTATTTGTGTGAGAATATGCCTGAGTTTATGGAGGCAATTGTTAAAGTTGTT 126
||||| | |||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 620 -TGACTCT-TATTTGTGTGAGAATATGCCTGAGGTGATTGAGGCAATTGTTAAAGTTGTT 677
Query 127 TATAACAGTCCCAAGAAGCTACTGGAATCTCTTCCATCAGTCAAGAATCTCTATTTATGT 186
|||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 678 CATAAAAGTCCCATGAAGCTACTGGGATCTCTTCCATCAGTCAAGAATCTCTATTTATG- 736
Query 187 TC-AACTGCTTCAAAACCTTCAATGATTCAGCACCGTAT-TGGATTTTATCATCTTGTTC 244
|| || | | || |||| || |||| |||| || ||| ||||||||||||| |
Sbjct 737 TCTAA---C-T---AA--TTCAGTGCTTCAACACCAAATAGGGA-TTTATCATCTTGTCC 786
Query 245 ATTTGGAGATATGTCAACACTCTCCAGGGTGGTGGGATCTACTTTCTTGGATGCTTGATA 304
|||||||| |||||||| |||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 787 ATTTGGAGCTATGTCAAGACTCTCCAGGGTGGTGGGGTCTGCTTACTTGGATGCTTGATA 846
Query 305 GTTCTCCTAAACTACAAGTTCTCAAGCTC-AACAAGTGCAAAGAACGCCCTTGTTTCACA 363
|||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
Sbjct 847 ATTCTCCTAAACTACAAGTTCTCAAGCTCGGA-AAGTGCAAAGAACG---TTGTTTCATA 902
Query 364 TCGTTCATCGAACA-TTGCTGGAGAGGACCGAGTTCAGTTCCTGAATGTTTGCGGTTGCA 422
|||| ||| ||| | | |||||||||||| | ||||||||| |||||||||||||| ||
Sbjct 903 TCGTCCATTGAA-AGTCACTGGAGAGGACCAATTTCAGTTCCAGAATGTTTGCGGTTACA 961
Query 423 TCTCTCTACTTTTGAGTGGAAATATTACAATGGAAGAGATGAGGAGAAGAAAGTAGTGGC 482
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 962 TCTGTCTACTTTTGAGTGGAAATATTACAATGGAAGAGATGAGGAGAAGAAAATAGTGGC 1021
Query 483 GTACATCTTAAAGAACGCAAGACAGCTAAAGACCGCGGCTTTCTCTGTTCAAAGAGTGTT 542
||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1022 GTACATCCTAAAGAATGCAAGACAGCTAAAGACTGCGGCTTTCTCTGTTCAAAGAGTGTT 1081
Query 543 TACCACGGAAGAGCGATTTCAAAAAC-TCAAGGAG-TTGGTTTCTCTGCCTAGAGCTTCA 600
| ||| | ||||| ||||||| |||| | |||||| ||| ||||||||| ||||||||||
Sbjct 1082 TCCCATGAAAGAGAGATTTCAGAAACAT-AAGGAGGTTG-TTTCTCTGCATAGAGCTTCA 1139
Query 601 AGCTCATGTAAACTTATGTTGGATTGA 627
|||||||||||||||||||||||||||
Sbjct 1140 AGCTCATGTAAACTTATGTTGGATTGA 1166
> AT4G00160.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr4:63410-65479 FORWARD LENGTH=1531
Length=1531
Score = 63.9 bits (34), Expect = 2e-09
Identities = 54/63 (86%), Gaps = 4/63 (6%)
Strand=Plus/Plus
Query 274 TGGTGGGATCTACTTTC-TTGGATGCTTG-ATAGTTCTCCTAAACTACAAGTTCTCAAGC 331
||||||||||||||| | | ||||| | | | ||||||||||||||||||||||||||
Sbjct 1013 TGGTGGGATCTACTTACGCT-CATGCTCGAACA-TTCTCCTAAACTACAAGTTCTCAAGC 1070
Query 332 TCA 334
|||
Sbjct 1071 TCA 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5