BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495739
Length=2305
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56500.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 3249 0.0
AT3G13470.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 1194 0.0
AT1G33740.1 | Symbols: | pseudogene, putative chaperonin 60 be... 121 4e-26
> AT5G56500.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr5:22873791-22877396 FORWARD LENGTH=2318
Length=2318
Score = 3249 bits (1759), Expect = 0.0
Identities = 2144/2322 (92%), Gaps = 57/2322 (2%)
Strand=Plus/Plus
Query 1 AAACCTCTCGCAGTCGCTAAAACCCTTGATCCATCTCTTGATCGCTGATTTTTGC-AGAG 59
||||||||| ||||||||||||||||||| |||||||||||||||| | || | | ||
Sbjct 27 AAACCTCTCTCAGTCGCTAAAACCCTTGAACCATCTCTTGATCGCT-A-GCTT-CTAAAG 83
Query 60 AGTG--AAACTATGGCATCAACTTTTAGCGCAACGTCTTCAATGGGTTCATGTTTGGCTC 117
|||| |||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||
Sbjct 84 AGTGAAAAACCATGGCATCAACCTTTAGCGCAACGTCGTCAATGGGTTCATCTTTGGCTC 143
Query 118 CTCCTTCGAATCGATTGTCATCTTTTGTTTCGATCTCATCAAGCTCTTTTGGAAAGAGTC 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 144 CTCCTTCGAATCGATTGTCATCTTTTGTTTCGATCTCATCAAGCTCTTTTGGAAGGACTC 203
Query 178 AGACTTTTGCTCAGAGGAAAGCAAGGTTTCCTAAAATCTATGCGGCTAAGCAATTGCATT 237
||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 204 AGAGTATTGCTCAGAGGAAAGCAAGGTTTCCTAAAATATATGCGGCTAAGCAATTGCATT 263
Query 238 TCAATAAGGACGGGACTGCGATTAAGAAGCTTCAAGCTGGTGTGAATAAACTTGCGGATT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 TCAATAAGGACGGGACTGCGATTAAGAAGCTTCAAGCTGGTGTGAATAAACTTGCGGATT 323
Query 298 TAGTTGGGGTTACTTTAGGTCCTAAAGGCAGGAATGTTGTTTTAGAGAGCAAATACGGTT 357
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 324 TAGTTGGGGTTACTTTAGGTCCTAAAGGCAGGAATGTTGTTCTAGAGAGCAAATACGGTT 383
Query 358 CCCCTAGAATCGTAAATGACGGTGTTACAGTCGCTAGAGAGGTTGAGCTTGAGGATCCAG 417
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 384 CCCCTAGAATCGTTAATGATGGTGTTACGGTCGCTAGAGAGGTTGAGCTTGAGGATCCAG 443
Query 418 TTGAGAACATTGGTGCTAAGCTAGTGAGACAAGCTGCTTCCAAGACTAATGACTTAGCTG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TTGAGAACATTGGTGCTAAGCTAGTGAGACAAGCTGCTTCCAAGACTAATGACTTAGCTG 503
Query 478 GTGATGGAACAACGACTTCTGTTGTTCTTGCGCAAGGTCTCATCGCCGAAGGTGTAAAGG 537
||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||
Sbjct 504 GTGATGGAACAACGACTTCTGTTGTTCTTGCTCAAGGTCTTATTGCTGAAGGTGTAAAGG 563
Query 538 TGGTGGCTGCTGGTGCAAATCCGGTTTTGATTACCAGAGGTATCGAGAAAACCACCAAGG 597
|||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 564 TGGTAGCTGCTGGTGCAAATCCTGTTTTGATTACCAGAGGTATTGAGAAAACCACCAAAG 623
Query 598 CTCTTGTTGCTGAGTTGAAGAAAATGTCAAAGGAGGTCGAAGACAGTGAACTAGCAGATG 657
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 624 CTCTTGTGGCTGAGTTGAAGAAAATGTCAAAGGAGGTTGAAGACAGTGAACTAGCAGATG 683
Query 658 TTGCAGCGGTTAGTGCAGGAAACAATTACGAAGTTGGTAATATGATTGCGGAAGCAATGG 717
||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 684 TTGCAGCAGTTAGTGCAGGAAACAATTACGAAGTAGGCAATATGATTGCAGAAGCAATGG 743
Query 718 CAAAAGTTGGTCGTAAGGGTGTTGTTACTCTCGAGGAAGGAAAAAGCGCTGAGAACAGCC 777
|||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 744 CAAAAGTTGGTCGTAAAGGTGTTGTCACTCTAGAGGAAGGCAAAAGCGCTGAGAACAGCC 803
Query 778 TTTATGTTGTTGAAGGAATGCAATTTGATCGTGGTTATATCTCTCCTTACTTTGTCACCG 837
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TTTACGTTGTTGAAGGAATGCAATTTGATCGTGGTTATATCTCTCCTTACTTTGTCACCG 863
Query 838 ACAGTGAGAAAATGTCTGCAGAATACGAGAACTGCAAGTTGTTTCTTGTTGACaaaaaaa 897
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 864 ACAGTGAGAAAATGTGTGCAGAATATGAGAACTGCAAGTTGTTTCTTGTTGACAAAAAGA 923
Query 898 TAACAAATGCTAGAGACATTATCAACATTCTGGAAGATGCGATTAAAGGTGGATACCCGC 957
|||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 924 TAACAAATGCTAGAGATATTATTAGCATTCTGGAAGATGCGATTAAAGGTGGATACCCGC 983
Query 958 TTTTGATCATTGCTGAAGATATTGAGCAAGAGCCATTAGCGACTCTTGTTGTTAACAAGC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TTTTGATCATTGCTGAAGATATTGAGCAAGAGCCATTAGCGACTCTTGTTGTTAACAAGC 1043
Query 1018 TTCGCGGAACAATAAAAGTTGCTGCTCTGAAAGCTCCTGGATTTGGAGAGAGGAAAAGCC 1077
|||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1044 TTCGTGGGACAATAAAAGTTGCTGCTTTGAAAGCTCCTGGATTTGGAGAGAGGAAAAGCC 1103
Query 1078 AGTACCTTGATGACATTGCTGCTCTTACAGGAGCTACTGTGATTAGGGAAGAAGTTGGGC 1137
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1104 AGTACCTTGATGACATTGCTGCGCTTACAGGAGCTACTGTGATTAGGGAAGAAGTTGGAC 1163
Query 1138 TTCAGTTGGAGAAAGTTGGACCAGAAGTTTTGGGTAATGCTGGTAAAGTGGTTCTCACAA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 TTCAGTTGGAGAAAGTTGGACCAGAAGTTTTGGGTAATGCTGGTAAAGTGGTTCTCACAA 1223
Query 1198 AAGACACTACGACGATAGTTGGTGATGGAAGTACTGAAGAAGTTGTGAAGAAGAGAGTTG 1257
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 AAGATACTACAACGATAGTTGGTGATGGAAGTACTGAAGAAGTTGTGAAGAAGAGAGTTG 1283
Query 1258 AACAGATCAAGAATCTTATCGAGGCTGCTGAACAAGACTATGAAAAGGAAAAGCTTAATG 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 AACAGATCAAGAATCTTATCGAGGCTGCTGAACAAGACTATGAAAAGGAAAAGCTTAATG 1343
Query 1318 AGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGGTTGGAGCTCAAACTGAGA 1377
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1344 AGAGAATTGCTAAATTATCAGGCGGTGTTGCTGTAATTCAGGTTGGAGCACAAACTGAGA 1403
Query 1378 CAGAGCTTAAGGAGAAGAAATTGAGAGTTGAAGATGCTCTTAATGCTACAAAGGCTGCTG 1437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1404 CAGAGCTTAAGGAGAAGAAATTAAGAGTTGAAGATGCTCTTAATGCTACAAAGGCTGCTG 1463
Query 1438 TGGAAGAAGGTATTGTTGTTGGAGGAGGATGTACTCTGCTAAGACTTGCATCGAAAGTGG 1497
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1464 TGGAAGAAGGTATTGTTGTTGGCGGAGGATGTACTCTGCTAAGACTTGCATCGAAAGTGG 1523
Query 1498 ATGCCATTAAAGAGACACTAGCAAACGATGAAGAAAAGGTTGGAGCTGACATTGTTAAGA 1557
| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 ACGCTATTAAAGAGACTCTAGCAAACGATGAAGAAAAGGTTGGAGCTGACATTGTTAAGA 1583
Query 1558 AAGCATTGAGCTACCCATTGAAGTTAATCGCCAAGAACGCTGGTGTAAATGGTAGCGTCG 1617
||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1584 AAGCATTGAGCTACCCACTGAAGTTAATCGCCAAGAACGCTGGTGTCAATGGCAGCGTTG 1643
Query 1618 TCAGTGAGAAGGTTCTCTCTAGCGACAACCCAAAACACGGTTACAACGCTGCAACTGGCA 1677
|||||||||||||||| ||||| |||||||| ||||| |||||||| |||||||||||||
Sbjct 1644 TCAGTGAGAAGGTTCTTTCTAGTGACAACCCTAAACATGGTTACAATGCTGCAACTGGCA 1703
Query 1678 AATACGAAGATCTAATGGCTGCAGGAATCATTGATCCAACCAAAGTTGTGAGATGTTGCT 1737
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 AATACGAAGATCTCATGGCTGCAGGAATCATTGATCCAACCAAAGTTGTGAGATGTTGCC 1763
Query 1738 TAGAGCATGCTTCATCTGTGGCTAAGACATTCTTGATGTCTGATTGTGTGGTTGTGGAGA 1797
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1764 TAGAGCATGCTTCATCTGTGGCAAAGACATTCTTGATGTCTGATTGTGTTGTTGTGGAGA 1823
Query 1798 TCAAGGAGCCTGAATCAGCAGCTCCTGCTGGTAACCCTATGGACAATTCAGGTTACGGCT 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 TCAAGGAGCCTGAATCAGCAGCTCCTGCTGGTAACCCTATGGACAATTCAGGTTACGGCT 1883
Query 1858 TCTAAGTTAGCAATTGAGAAGAGAGTAAGAGTAGTCTCTGAGGAAGCAAAAACCACGACC 1917
|||||||| ||||||||||| |||||| | | | |||| ||||||||| ||||||||
Sbjct 1884 TCTAAGTTGGCAATTGAGAACAGAGTA-G--TC--C-CTGATGAAGCAAAAGCCACGACC 1937
Query 1918 AAGCTCTTTATTTCCTGATATGAAACATCTTTTAGCCAATGTAAAAT-TATGTTTTTCCA 1976
||| |||| | |||||||| |||||| ||||| |||||||||||| | ||||||||||||
Sbjct 1938 AAGTTCTTCACTTCCTGATCTGAAACTTCTTTAAGCCAATGTAAATTATATGTTTTTCCA 1997
Query 1977 GTGACCTGAAGAAACATATAATTTGGTT-TCCTGTTCTCTGTTTCTTGATCAAGTGTTTC 2035
|||||||||||||||||||||||||||| | ||||||| | ||| |||||||| ||||
Sbjct 1998 GTGACCTGAAGAAACATATAATTTGGTTCTG-TGTTCTCCGATTCAAGATCAAGTTTTTC 2056
Query 2036 AATATGATC--CTTCACGAAAGAATGATATGATTTTGCAGTTTGCAGTGGTCAATAGATT 2093
||||||| | |||||| ||||| || | |||||||||||| |||||||| |
Sbjct 2057 AATATGA-CAACTTCACTAAAGA--GACA--------CAGTTTGCAGTGCTCAATAGACT 2105
Query 2094 TGATTTGGTTAGAGTATCATTTTCTTTCTCTCAAATTAAAACGAAATGTAATGTTGTTGT 2153
|||||| ||||| ||||||||||||| | ||||||||||||||| | | | | | |
Sbjct 2106 TGATTTAGTTAG--TATCATTTTCTTTATTTCAAATTAAAACGAAC-G-AG-GATAT-G- 2158
Query 2154 CTCCCGGTTCCTTACCaaaaaaaa---aa-aaGCAA-CTATCAAG-CAAAAT-ACTAAtt 2206
| | | | | | || || || || || ||| | | ||| | |||| |||| ||
Sbjct 2159 CACAAAAT-CATGAGCAGCAACAAGCCAACAACCAAGC-A-CAATACTAAATTACTACTT 2215
Query 2207 ttttt-t--ttttGTGTGTGGCTTCCATAGCCAATATATATATCTTGATTTCTGTAAAAT 2263
| ||| | |||| | |||||| |||||||||||||| |||||| || ||||||
Sbjct 2216 TGTTTGTGGTTTT-T-TGTGGCCTCCATAGCCAATAT------CTTGATA-CTTTAAAAT 2266
Query 2264 TGTAATCTATTTGGTTAGTTCGACAATTCTCTTTACATGAGC 2305
|||||||||||| ||||||| |||||||||||||| |||||
Sbjct 2267 TGTAATCTATTTAATTAGTTCAACAATTCTCTTTACCTGAGC 2308
> AT3G13470.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr3:4389256-4392801 FORWARD LENGTH=2093
Length=2093
Score = 1194 bits (646), Expect = 0.0
Identities = 1340/1674 (80%), Gaps = 51/1674 (3%)
Strand=Plus/Plus
Query 218 TGCGGCTAAGCAATTGCATTTCAATAAGGACGGGACTGCGATTAA-GAAGCTTCAAG-CT 275
||| || ||| | ||||||||||||||||| |||||| | | ||| ||| |||| || ||
Sbjct 275 TGCAGCCAAGGAGTTGCATTTCAATAAGGATGGGACTACCA-TAAGGAAACTTC-AGACT 332
Query 276 GGTGTGAATAAACTTGCGGA-TTTAGTTGGGGTTAC-TTTAGGTCCTAAAGGCAGGAATG 333
||||| || || || ||||| || ||||| || || || || || ||||| || ||||
Sbjct 333 GGTGTTAACAAGCTCGCGGACCTT-GTTGGTGTCACACTT-GGACCAAAAGGGAGAAATG 390
Query 334 TTGTT-TTAGAGAGCAAATACGGTTCCCCTAGAATCGTAAATGACGGTGTTACAGTCGCT 392
||||| || |||||||| || || ||||| ||||| || ||||| ||||| || || ||
Sbjct 391 TTGTTCTT-GAGAGCAAGTATGGATCCCCAAGAATTGTTAATGATGGTGTCACTGTTGCG 449
Query 393 AGAGAGGTTGAGCTT-GAGGATCCAGTTGAGAACATTGGTGCTAAGCTAGTGAGACAAGC 451
|| ||||| ||| || ||||| || ||||||||||||||||| ||||| || || |||||
Sbjct 450 AGGGAGGTCGAG-TTGGAGGACCCGGTTGAGAACATTGGTGCAAAGCTTGTAAGGCAAGC 508
Query 452 TGCTTCCAAGACTAATGACTTAGCTGGTGATGGAACAACGACTTCTGTTGTTCTTGCGCA 511
||| | ||||| |||||||| |||||||| || ||||| || |||||||||||||| ||
Sbjct 509 AGCTGCAAAGACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACA 568
Query 512 AGGTCTCATCGCCGAAGGTGTAAAGGTGGTGGCTGCTGGTGCAAATCCGGTTTTGATTAC 571
|||| | || || || ||||| |||||||||||||| ||||| || || || ||||| ||
Sbjct 569 AGGTTTTATTGCTGAGGGTGTCAAGGTGGTGGCTGCAGGTGCGAACCCTGTATTGATCAC 628
Query 572 CAGAGGTATCGAGAAAACCACCAAGGCTCTT-GTT-GCTGAGTTGAAGA-AAATGTCAAA 628
|| || || ||||| || | |||||| || ||| | ||| |||| | ||||| ||
Sbjct 629 TAGGGGGATTGAGAAGACTGCAAAGGCT-TTGGTTAAC-GAGCTGAA-ACTTATGTCTAA 685
Query 629 GGAGGTCGAAGACAGTGAACTAGCAGATGTTGCAGCGGTTAGTGCAGGAAACAATTACGA 688
|||||| |||||||||||||| || ||||| ||||| |||||||| || || || ||||
Sbjct 686 GGAGGTTGAAGACAGTGAACTTGCTGATGTGGCAGCTGTTAGTGCGGGTAATAACCACGA 745
Query 689 AGTTGGTAA-TATGATTGCGGAAGCAATG-GCAAAAGTTGGTC-GTAAGGGTGTTGTTAC 745
|||||| || ||||||||| ||||||||| || |||| ||| | | |||||||| || ||
Sbjct 746 AGTTGG-AAGTATGATTGCTGAAGCAATGAGC-AAAG-TGGGCAGGAAGGGTGTGGTGAC 802
Query 746 TCTCGAGGAAGGAAAAAGCGCTGAGAACAGCCTTTATGTTGTTGAAGGAATGCAATTTGA 805
|| ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 803 CCTGGAGGAGGGAAAAAGCGCTGAGAACAACCTTTATGTTGTGGAAGGAATGCAATTTGA 862
Query 806 TCGTGGTTATATCTCTCCTTACTTTGTCACCGACAGTGAGAAAATGTCTGCAGAATACGA 865
|||||||||||||| || |||||||| || ||||||||||||||||||| || || ||
Sbjct 863 CCGTGGTTATATCTCCCCATACTTTGTGACAGACAGTGAGAAAATGTCTGTTGAGTATGA 922
Query 866 GAACTGCAAGTTGTTTCTTGTTGACaaaaaaaTAACAAATGCTAGAGA-CATTATCAACA 924
|| ||||||||| ||||||||||||| ||| |||| ||||| || || | || |
Sbjct 923 CAATTGCAAGTTGCTTCTTGTTGACAAGAAAGTAACCAATGCAAGGGATC-TTGTTGGGG 981
Query 925 TTCTGGAAGATGCGATTAAAGGTGGATACCCGCTTTTGATCATTGCTGAAGATATTGAGC 984
|||| || |||||||||| ||| |||||||| | | || ||||| ||||||||||| |
Sbjct 982 TTCTAGAGGATGCGATTAGAGGCGGATACCCAATCCTCATAATTGCAGAAGATATTGAAC 1041
Query 985 AAG-AGCCATTAGCGACTCTTGTTGTTAACAAGCTTCGCGGAACAATAAAAG-TTGCTGC 1042
||| |||| ||||| ||||||||||||||||||||| | || ||| | ||| |||| ||
Sbjct 1042 AAGAAGCC-TTAGCTACTCTTGTTGTTAACAAGCTTAGAGGCACACT-GAAGATTGCAGC 1099
Query 1043 TCTGAAAGCTCCTGGATTTGGAGAGAGGAAAAGCCAGTACCTTGATGACATTGCTGCTCT 1102
||| ||||||||||||||||||||| | || ||||| |||||||| || ||||| |||
Sbjct 1100 TCTCAAAGCTCCTGGATTTGGAGAGCGCAAGAGCCAATACCTTGACGATATTGCCATTCT 1159
Query 1103 TACAGGAGCTACTGTGATTAGGGAAGAAGTTGGGC-TTCAGTTGGAGAAAGTTGGACCAG 1161
|| ||||| |||||||| || || |||||||| | ||| || || |||| |||| ||
Sbjct 1160 AACTGGAGCAACTGTGATCAGAGAGGAAGTTGGTCTTTCTCTT-GACAAAGCTGGAAAAG 1218
Query 1162 AAGTTTTGGGTAATGCTGGTAAAGTGGTTCTCACAAAAGACACT-ACGACGATAGTTGGT 1220
| ||| ||||||| ||| || || || || ||||| || | | || || || || |||
Sbjct 1219 AGGTTCTGGGTAACGCTTCCAAGGTTGTCCTGACAAAGGA-AATGACAACAATTGTGGGT 1277
Query 1221 GATGGAAGTACTGAAGAAGTTGTGAAGAAGAGAGTTGAACAGATCAAGAATCTTATCGAG 1280
||||| | || |||||| ||||| ||| | |||| |||||| | ||||||||| ||
Sbjct 1278 GATGGGACCACACAAGAAGCAGTGAACAAGCGTGTTGTACAGATTAGGAATCTTATTGA- 1336
Query 1281 GC-TGCTGAACAAGACTATGAAAAGGAAAAGCTT-AATGAGAGAATTGCTAAATTATCAG 1338
|| || || |||||||| || |||||||| || |||||||||||||| || | || |
Sbjct 1337 GCAAGCGGAGCAAGACTACGAGAAGGAAAA-ATTAAATGAGAGAATTGCGAAGCTCTCTG 1395
Query 1339 GCGGTGTTGCTGTAATTCAGGTTGGAGCTCAAACTGAGACAGAGCTTAAGGAGAAGAAAT 1398
| || ||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1396 GTGGAGTTGCTGTAATTCAGGTTGGAGCTCAAACTGAGACAGAGCTCAAAGAAAAGAAGC 1455
Query 1399 TGAGAGTTGAAGATGCTCTTAATGCTACAAAGGCTGCTGTGGAAGAAGGTATTGTTGTTG 1458
||||||| |||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 1456 TGAGAGTGGAAGATGCTCTTAATGCTACAAAGGCTGCTGTTGAGGAAGGTATTGTCGTTG 1515
Query 1459 GAGGAGGATGTACTCTGCTAAGACTTGCATCGAAAG-TGGATGCCATTAAAGAGACACTA 1517
| || || || |||||||| | |||||||| |||| | |||||||| || || || ||
Sbjct 1516 GTGGTGGTTGCACTCTGCTCCGGCTTGCATC-AAAGGTCGATGCCATCAAGGATACCCTT 1574
Query 1518 GCAAACGATGAAGAAAAGGTTGGAGCTGACATTGTTAAGAA-AGCATTGAGCTACCCAT- 1575
| ||| |||||||||||||||||||| || |||||||| || |||| |||| ||||| |
Sbjct 1575 GAAAATGATGAAGAAAAGGTTGGAGCGGAAATTGTTAA-AAGAGCACTGAGTTACCC-TC 1632
Query 1576 TGAAGTTAATCGCCAAGAACGCTGGTGTAAATGGTAGCGTCGTCAGTGAGAAGGTTCTCT 1635
|||| || || || ||||| |||||||| ||||| || || ||||| |||||||| ||
Sbjct 1633 TGAAATTGATAGCTAAGAATGCTGGTGTTAATGGAAGTGTTGTCAGCGAGAAGGTGCTGG 1692
Query 1636 CTAGCGACAACCCAAAACACGGTTACAACGCTGCAACTGGCAAATACGAAGATCTAATGG 1695
||| ||| || ||| || ||||| |||||||| ||||| || ||||| || ||||
Sbjct 1693 CTAACGATAATGTGAAATTTGGATACAATGCTGCAACCGGCAAGTATGAAGACCTGATGG 1752
Query 1696 CTGCAGGAATCATTGATCCAACCAAAG-TTGTGAGATGTTGCTTAGAGCATGCTTCATCT 1754
||||||| ||||| || || || |||| ||||||||||||||||||| ||||| | ||
Sbjct 1753 CTGCAGGCATCATCGACCCGAC-AAAGGTTGTGAGATGTTGCTTAGAACATGCCGCCTCA 1811
Query 1755 GTGGCTAAGACATTCTTGATGTCTGATTGTGTGGTTGTGGAGATCA-AGGAGCCTGAATC 1813
|| || ||||| |||||||||||||| ||||||||||| |||||| || |||| || |
Sbjct 1812 GTTGCAAAGACGTTCTTGATGTCTGACTGTGTGGTTGTTGAGATCCCAG-AGCCAGAG-C 1869
Query 1814 AGCAGCTCCTGCTGGTAACCCTATGGACAATTCAGGTTACGGCTTCTAAGTTAG 1867
||| ||||||||||||||| |||||||| |||||||| || | ||||| |||
Sbjct 1870 --CAGTTCCTGCTGGTAACCCAATGGACAACTCAGGTTATGGATACTAAGATAG 1921
> AT1G33740.1 | Symbols: | pseudogene, putative chaperonin 60
beta precursor, similar to chaperonin 60 beta precursor GB:JT0901
GI:81601 from (Arabidopsis thaliana); blastp match of
78% identity and 1.2e-11 P-value to PIR|JT0902|JT0902 chaperonin
60 beta - wheat (fragment) | chr1:12230180-12230430 REVERSE
LENGTH=251
Length=251
Score = 121 bits (65), Expect = 4e-26
Identities = 85/95 (89%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 1629 GTTCTCTCTAGCGACAACCCAAAACACGGTTACAACGCTGCAACTGGCAAATACGAAGAT 1688
||||| ||||||||||| || |||| |||||||||||||||||||||||||||| |||||
Sbjct 1 GTTCTTTCTAGCGACAATCCTAAACGCGGTTACAACGCTGCAACTGGCAAATACAAAGAT 60
Query 1689 CTAATGGCTGCAGGAATCATTGATCCAACCAAAGT 1723
||||||||| || |||||| ||| ||||||||||
Sbjct 61 CTAATGGCTACAAAAATCATCGATACAACCAAAGT 95
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114407042055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5