BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495741 Length=1795 Score E Sequences producing significant alignments: (Bits) Value AT5G56510.1 | Symbols: APUM12, PUM12 | pumilio 12 | chr5:228817... 2833 0.0 > AT5G56510.1 | Symbols: APUM12, PUM12 | pumilio 12 | chr5:22881721-22883842 FORWARD LENGTH=1791 Length=1791 Score = 2833 bits (1534), Expect = 0.0 Identities = 1710/1796 (95%), Gaps = 8/1796 (0%) Strand=Plus/Plus Query 1 ATGGATCAGAGAAGAGGAAATGAGCTTGATGAATTTGAGAAGCTTCTTGGAGAGATTCCA 60 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGGATCAGAGAAGAGGAAATGAGCTTGATGAATTTGAGAAGCTTCTAGGAGAGATTCCA 60 Query 61 AAAGTTACTTCAGGAAACGACTATAACCATTTCCCTATATGTATGAGCTCAAGCAGATCA 120 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 61 AAAGTTACTTCAGGAAACGACTATAACCATTTCCCTATATGTTTGAGCTCAAGCAG---A 117 Query 121 TCACAATCCATCAAGAAGATGGATCAATATCTTCCTGATGACCGCGCTTTTACCACTTCA 180 |||||||||||||||||| | ||||||||||||||||||||||| || |||||||||||| Sbjct 118 TCACAATCCATCAAGAAGGTTGATCAATATCTTCCTGATGACCGTGCCTTTACCACTTCA 177 Query 181 TTTGCTGAGGCTAACTTACACTTTGGAATCCCAAACCA-AGCTCCTGAATCTCCCCATCC 239 ||| | ||||||||||||||||||||||||||||| || | |||| || ||||||||||| Sbjct 178 TTTTCCGAGGCTAACTTACACTTTGGAATCCCAAATCACA-CTCCAGAGTCTCCCCATCC 236 Query 240 TTTGTTCATTAATCCTACTTACCACTCACCAAGTAGCTCACCATGTGTATATGACAAGTT 299 |||||||||||| ||| |||||||||||||||||| |||||| ||||||||||||||||| Sbjct 237 TTTGTTCATTAACCCTTCTTACCACTCACCAAGTAACTCACCTTGTGTATATGACAAGTT 296 Query 300 TGATTCAAGAAAACTTGATCCGGTAATGTTCAGGAAGCTGCAACAAGTTGGATGCTTTCC 359 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| Sbjct 297 TGATTCAAGAAAACTCGATCCGGTAATGTTCAGGAAGCTGCAACAAGTTGGATACCTTCC 356 Query 360 AAACTTCTCTTCCGGGATCTCACCTGCTCAGCCGCAGCATTACCTGCCACATTCGCAGTC 419 |||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 357 AAACTTGTCTTCAGGGATCTCACCTGCTCAGCGGCAGCATTACCTGCCACATTCGCAGCC 416 Query 420 TCTGTCTCACTATCAATCTCCTATGAATTGGAGGAATATGGAAGAGGAAAATTTTCAGAG 479 |||||||||||||||||| ||||||| ||||||| |||| ||||| |||||||||||||| Sbjct 417 TCTGTCTCACTATCAATCACCTATGACTTGGAGGGATATCGAAGAAGAAAATTTTCAGAG 476 Query 480 GCTTAAACTGCAAGAAGAACAGTATTTGTCTATGAACCCTCATTTCCTTCATCTTCAGGG 539 ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| | Sbjct 477 GCTTAAACTTCAAGAAGAACAGTATTTGTCTATTAACCCTCATTTCCTCCATCTTCAGAG 536 Query 540 CATGGATACTGTTCCAAGACAGGAGCATTTCGATTATCGCCGAGCTGAACAGTCTAACAG 599 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 537 CATGGATACTGTTCCAAGACAGGACCATTTCGATTATCGCCGAGCTGAACAGTCTAACAG 596 Query 600 AAACCTGTTTTGGAATGGGGAAGATGGTAATGAAAGTGTGAGGAAAATGTGTTATCCGGA 659 |||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 597 AAACTTGTTTTGGAATGGAGAAGATGGTAATGAAAGTGTGAGGAAAATGTGCTATCCGGA 656 Query 660 GAAGATTTTGATGAGATCACAGCTCGATTTGAACACTGCTAAAGTCATAAAGTATGGTGC 719 ||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 657 GAAGATTTTAATGAGATCACAGATGGATTTGAACACTGCTAAAGTCATAAAGTATGGTGC 716 Query 720 TGGAGATGATTCACAAAATGGAAGACTTTGGTTGCAGAATCAACTCAATGAAGATCATCT 779 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 717 TGGAGATGAGTCACAAAATGGAAGACTTTGGTTGCAGAATCAACTCAATGAAG---ATCT 773 Query 780 CACAATGAGCCTCAACAATCTGTCATTGCAGCCTCAAAAGTATAACTCTCTTGCAGAGGC 839 ||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 774 CACAATGAGTCTCAATAATCTGTCATTGCAGCCTCAAAAGTATAACTCTATTGCAGAGGC 833 Query 840 AAGAGGGAAGATATACTACTTGGCAAAGGATCAGCACGGTTGTCGCTTCTTGCAGAGGAT 899 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 834 AAGAGGGAAGATATACTACTTGGCCAAGGATCAGCACGGTTGTCGCTTCTTGCAGAGAAT 893 Query 900 ATTTGCTGAGAAAGATGGGAATGATATAGAGATGATCTTTGATGAGATCATTGACTATAT 959 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 894 ATTTTCTGAGAAAGATGGGAATGATATAGAGATGATCTTTAATGAGATCATTGACTATAT 953 Query 960 CAGTGAGCTTATGATAGATCCTTTTGGGAATTATTTGGTTCAAAAGCTGCTCGAAGTATG 1019 ||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||| Sbjct 954 CAGTGAGCTAATGATGGATCCTTTTGGGAACTATTTGGTTCAAAAGCTGCTAGAAGTATG 1013 Query 1020 CAACGAGGATCAGAGAATGCAGATTGTTCATTCCATAACTAGAAAACCAGGACTGCTAAT 1079 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 1014 CAATGAGGATCAGAGGATGCAGATTGTTCATTCCATAACTAGAAAACCAGGACTGCTTAT 1073 Query 1080 CAAAATCTCTTGTGATATGCACGGGACTAGAGCTGTTCAAAAGATCGTTGAAACGGCTAA 1139 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1074 CAAAATCTCTTGTGATATGCACGGGACTAGAGCTGTTCAAAAGATAGTTGAAACGGCTAA 1133 Query 1140 GAGGGAAGAGGAGATTTCAATCATCATTTCTGCTTTGAAGCATGGCATTGTGAATTTGAT 1199 ||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1134 GAGAGAGGAGGAGATTTCAATCATCATTTCTGCTTTGAAGCATGGCATTGTGCATTTGAT 1193 Query 1200 AAAGAATGTAAACGGTAATCACGTTGTTCAACGATGCTTGCAGTATCTATTACCTCACTG 1259 ||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||| Sbjct 1194 AAAGAATGTAAACGGTAATCACGTTGTACAACGATGTTTGCAGTATCTGTTACCTTACTG 1253 Query 1260 CGGCAAGTTCCTTTTCGAAGCTGCCATTACTCATTGTGTTGACCTTGCAACTGATCGACA 1319 ||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| Sbjct 1254 CGGAAAGTTCCTTTTCGAAGCTGCGATTACTCATTGTGTTGAGCTTGCAACTGATAGACA 1313 Query 1320 TGGATGTTGTGTACTTCAAAAATGTCTTGGCTATTCCGAAGGCGAACAAAAGCAACACTT 1379 |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct 1314 TGGATGTTGTGTACTTCAAAAATGTCTTGGATATTCAGAAGGCGAACAAAAGCAACATTT 1373 Query 1380 AGTCTCTGAAATTGCGTCAAATGCTCTACTCCTCTCTCAAGACCCTTTTGGGAACTATGT 1439 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1374 AGTCTCTGAAATTGCGTCCAATGCTCTACTCCTCTCTCAAGATCCTTTTGGGAACTATGT 1433 Query 1440 TCTTCAATATGTCTTTGAGCTTCAACTTCAATGGGCAACCTTTGAAATCCTCGAGCAATT 1499 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1434 ACTTCAATATGTCTTTGAGCTTCAACTTCAATGGGCAACCTTTGAAATCCTGGAGCAATT 1493 Query 1500 AGAAGGAAACTACACCGAGTTATCGATGCAGAAATGTAGCAGCAATGTAGTTGAAAAGTG 1559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1494 AGAAGGAAACTACACCGAGTTATCGATGCAGAAATGTAGCAGCAATGTAGTTGAAAAGTG 1553 Query 1560 TCTGAAACTAGCTGATGACAAACACCGAGCTCGCATCATCCGAGAATTGATTAACTATGG 1619 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1554 TCTGAAACTAGCTGATGACAAACACCGAGCTCGCATCATCAGAGAATTGATTAACTATGG 1613 Query 1620 TCGTCTTGATCAAGTTATGTTGGATCCTTATGGAAATTATGTCATTCAAGCAGCTCTTAG 1679 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1614 TCGTCTTGATCAAGTGATGTTGGATCCTTATGGAAATTATGTCATTCAAGCAGCTCTTAA 1673 Query 1680 ACAATCTAAGGGGAATGTTCATGCTCTTTTGGTTGATGCCATTAAACTTCATATCTCATC 1739 |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1674 ACAATCCAAGGGGAATGTTCATGCTCTTTTGGTTGATGCCATTAAACTGAATATCTCATC 1733 Query 1740 TCTTCGTACCAATCCTTACGGTAAAAAAGTCCTCTCCGCACTTAGCTCGAAGAAGT 1795 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1734 TCTTCGTACCAATCCTTACGGTAAAAAAGTCCTCTCCGCACTTAGCTCGAAGAAGT 1789 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88804764105 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5