BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495741
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56510.1 | Symbols: APUM12, PUM12 | pumilio 12 | chr5:228817... 2833 0.0
> AT5G56510.1 | Symbols: APUM12, PUM12 | pumilio 12 | chr5:22881721-22883842
FORWARD LENGTH=1791
Length=1791
Score = 2833 bits (1534), Expect = 0.0
Identities = 1710/1796 (95%), Gaps = 8/1796 (0%)
Strand=Plus/Plus
Query 1 ATGGATCAGAGAAGAGGAAATGAGCTTGATGAATTTGAGAAGCTTCTTGGAGAGATTCCA 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGATCAGAGAAGAGGAAATGAGCTTGATGAATTTGAGAAGCTTCTAGGAGAGATTCCA 60
Query 61 AAAGTTACTTCAGGAAACGACTATAACCATTTCCCTATATGTATGAGCTCAAGCAGATCA 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 61 AAAGTTACTTCAGGAAACGACTATAACCATTTCCCTATATGTTTGAGCTCAAGCAG---A 117
Query 121 TCACAATCCATCAAGAAGATGGATCAATATCTTCCTGATGACCGCGCTTTTACCACTTCA 180
|||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||||
Sbjct 118 TCACAATCCATCAAGAAGGTTGATCAATATCTTCCTGATGACCGTGCCTTTACCACTTCA 177
Query 181 TTTGCTGAGGCTAACTTACACTTTGGAATCCCAAACCA-AGCTCCTGAATCTCCCCATCC 239
||| | ||||||||||||||||||||||||||||| || | |||| || |||||||||||
Sbjct 178 TTTTCCGAGGCTAACTTACACTTTGGAATCCCAAATCACA-CTCCAGAGTCTCCCCATCC 236
Query 240 TTTGTTCATTAATCCTACTTACCACTCACCAAGTAGCTCACCATGTGTATATGACAAGTT 299
|||||||||||| ||| |||||||||||||||||| |||||| |||||||||||||||||
Sbjct 237 TTTGTTCATTAACCCTTCTTACCACTCACCAAGTAACTCACCTTGTGTATATGACAAGTT 296
Query 300 TGATTCAAGAAAACTTGATCCGGTAATGTTCAGGAAGCTGCAACAAGTTGGATGCTTTCC 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 297 TGATTCAAGAAAACTCGATCCGGTAATGTTCAGGAAGCTGCAACAAGTTGGATACCTTCC 356
Query 360 AAACTTCTCTTCCGGGATCTCACCTGCTCAGCCGCAGCATTACCTGCCACATTCGCAGTC 419
|||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 357 AAACTTGTCTTCAGGGATCTCACCTGCTCAGCGGCAGCATTACCTGCCACATTCGCAGCC 416
Query 420 TCTGTCTCACTATCAATCTCCTATGAATTGGAGGAATATGGAAGAGGAAAATTTTCAGAG 479
|||||||||||||||||| ||||||| ||||||| |||| ||||| ||||||||||||||
Sbjct 417 TCTGTCTCACTATCAATCACCTATGACTTGGAGGGATATCGAAGAAGAAAATTTTCAGAG 476
Query 480 GCTTAAACTGCAAGAAGAACAGTATTTGTCTATGAACCCTCATTTCCTTCATCTTCAGGG 539
||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |
Sbjct 477 GCTTAAACTTCAAGAAGAACAGTATTTGTCTATTAACCCTCATTTCCTCCATCTTCAGAG 536
Query 540 CATGGATACTGTTCCAAGACAGGAGCATTTCGATTATCGCCGAGCTGAACAGTCTAACAG 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 CATGGATACTGTTCCAAGACAGGACCATTTCGATTATCGCCGAGCTGAACAGTCTAACAG 596
Query 600 AAACCTGTTTTGGAATGGGGAAGATGGTAATGAAAGTGTGAGGAAAATGTGTTATCCGGA 659
|||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 597 AAACTTGTTTTGGAATGGAGAAGATGGTAATGAAAGTGTGAGGAAAATGTGCTATCCGGA 656
Query 660 GAAGATTTTGATGAGATCACAGCTCGATTTGAACACTGCTAAAGTCATAAAGTATGGTGC 719
||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 657 GAAGATTTTAATGAGATCACAGATGGATTTGAACACTGCTAAAGTCATAAAGTATGGTGC 716
Query 720 TGGAGATGATTCACAAAATGGAAGACTTTGGTTGCAGAATCAACTCAATGAAGATCATCT 779
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 717 TGGAGATGAGTCACAAAATGGAAGACTTTGGTTGCAGAATCAACTCAATGAAG---ATCT 773
Query 780 CACAATGAGCCTCAACAATCTGTCATTGCAGCCTCAAAAGTATAACTCTCTTGCAGAGGC 839
||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 774 CACAATGAGTCTCAATAATCTGTCATTGCAGCCTCAAAAGTATAACTCTATTGCAGAGGC 833
Query 840 AAGAGGGAAGATATACTACTTGGCAAAGGATCAGCACGGTTGTCGCTTCTTGCAGAGGAT 899
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 834 AAGAGGGAAGATATACTACTTGGCCAAGGATCAGCACGGTTGTCGCTTCTTGCAGAGAAT 893
Query 900 ATTTGCTGAGAAAGATGGGAATGATATAGAGATGATCTTTGATGAGATCATTGACTATAT 959
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 894 ATTTTCTGAGAAAGATGGGAATGATATAGAGATGATCTTTAATGAGATCATTGACTATAT 953
Query 960 CAGTGAGCTTATGATAGATCCTTTTGGGAATTATTTGGTTCAAAAGCTGCTCGAAGTATG 1019
||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 954 CAGTGAGCTAATGATGGATCCTTTTGGGAACTATTTGGTTCAAAAGCTGCTAGAAGTATG 1013
Query 1020 CAACGAGGATCAGAGAATGCAGATTGTTCATTCCATAACTAGAAAACCAGGACTGCTAAT 1079
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1014 CAATGAGGATCAGAGGATGCAGATTGTTCATTCCATAACTAGAAAACCAGGACTGCTTAT 1073
Query 1080 CAAAATCTCTTGTGATATGCACGGGACTAGAGCTGTTCAAAAGATCGTTGAAACGGCTAA 1139
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1074 CAAAATCTCTTGTGATATGCACGGGACTAGAGCTGTTCAAAAGATAGTTGAAACGGCTAA 1133
Query 1140 GAGGGAAGAGGAGATTTCAATCATCATTTCTGCTTTGAAGCATGGCATTGTGAATTTGAT 1199
||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1134 GAGAGAGGAGGAGATTTCAATCATCATTTCTGCTTTGAAGCATGGCATTGTGCATTTGAT 1193
Query 1200 AAAGAATGTAAACGGTAATCACGTTGTTCAACGATGCTTGCAGTATCTATTACCTCACTG 1259
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||
Sbjct 1194 AAAGAATGTAAACGGTAATCACGTTGTACAACGATGTTTGCAGTATCTGTTACCTTACTG 1253
Query 1260 CGGCAAGTTCCTTTTCGAAGCTGCCATTACTCATTGTGTTGACCTTGCAACTGATCGACA 1319
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||
Sbjct 1254 CGGAAAGTTCCTTTTCGAAGCTGCGATTACTCATTGTGTTGAGCTTGCAACTGATAGACA 1313
Query 1320 TGGATGTTGTGTACTTCAAAAATGTCTTGGCTATTCCGAAGGCGAACAAAAGCAACACTT 1379
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 1314 TGGATGTTGTGTACTTCAAAAATGTCTTGGATATTCAGAAGGCGAACAAAAGCAACATTT 1373
Query 1380 AGTCTCTGAAATTGCGTCAAATGCTCTACTCCTCTCTCAAGACCCTTTTGGGAACTATGT 1439
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1374 AGTCTCTGAAATTGCGTCCAATGCTCTACTCCTCTCTCAAGATCCTTTTGGGAACTATGT 1433
Query 1440 TCTTCAATATGTCTTTGAGCTTCAACTTCAATGGGCAACCTTTGAAATCCTCGAGCAATT 1499
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1434 ACTTCAATATGTCTTTGAGCTTCAACTTCAATGGGCAACCTTTGAAATCCTGGAGCAATT 1493
Query 1500 AGAAGGAAACTACACCGAGTTATCGATGCAGAAATGTAGCAGCAATGTAGTTGAAAAGTG 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 AGAAGGAAACTACACCGAGTTATCGATGCAGAAATGTAGCAGCAATGTAGTTGAAAAGTG 1553
Query 1560 TCTGAAACTAGCTGATGACAAACACCGAGCTCGCATCATCCGAGAATTGATTAACTATGG 1619
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1554 TCTGAAACTAGCTGATGACAAACACCGAGCTCGCATCATCAGAGAATTGATTAACTATGG 1613
Query 1620 TCGTCTTGATCAAGTTATGTTGGATCCTTATGGAAATTATGTCATTCAAGCAGCTCTTAG 1679
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 TCGTCTTGATCAAGTGATGTTGGATCCTTATGGAAATTATGTCATTCAAGCAGCTCTTAA 1673
Query 1680 ACAATCTAAGGGGAATGTTCATGCTCTTTTGGTTGATGCCATTAAACTTCATATCTCATC 1739
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1674 ACAATCCAAGGGGAATGTTCATGCTCTTTTGGTTGATGCCATTAAACTGAATATCTCATC 1733
Query 1740 TCTTCGTACCAATCCTTACGGTAAAAAAGTCCTCTCCGCACTTAGCTCGAAGAAGT 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 TCTTCGTACCAATCCTTACGGTAAAAAAGTCCTCTCCGCACTTAGCTCGAAGAAGT 1789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88804764105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5