BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495743
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56530.1 | Symbols: | Protein of Unknown Function (DUF239) ... 2316 0.0
AT2G03930.2 | Symbols: | Protein of Unknown Function (DUF239) ... 60.2 6e-08
> AT5G56530.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:22889226-22891769 FORWARD LENGTH=1749
Length=1749
Score = 2316 bits (1254), Expect = 0.0
Identities = 1440/1528 (94%), Gaps = 19/1528 (1%)
Strand=Plus/Plus
Query 1 ATTATAAAGGTGCTAGCTTTTTCAACACTTCACACCAAATAAAGCCTTTC-CCTTAAGAT 59
|||||||||||| |||||||||||| |||||||||||||||||||||||| | || ||||
Sbjct 15 ATTATAAAGGTGTTAGCTTTTTCAATACTTCACACCAAATAAAGCCTTTCTCGTT-AGAT 73
Query 60 AACTGAGAAGCA-TTACCCAAAAGCTTCTTCCTTTCTCACACActctctctctctctctg 118
|| | | ||||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 74 AAGTAACAAGCATTTACTCAAAAGCTTCTTCCTTTCT----CACTCTCTCTCTCTCTCTG 129
Query 119 tctcttcttctTGGCTTTAGACTTAAGATGGGTGCTGCAGCGCATTTTAGCAAGGAGAGG 178
||||||||| || |||||||||||||||| | ||||| ||||||||||| |||||||||
Sbjct 130 TCTCTTCTTGTTTGCTTTAGACTTAAGAT--G-GCTGCGGCGCATTTTAGTAAGGAGAGG 186
Query 179 GTTTTCAGAGGGTTTCTGTTTTGGTTCTGCTTTTGGGGACTGCTCTCTCTAACATGCGCA 238
|| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct 187 GTCTTCAGAGGGTTTCTGGTTTGGTTCTGCTTTTGGGGACTGATGTCTCTAACATGCGCT 246
Query 239 GGGAGACTCAGTGTTTCAAAGCAGAATCTTGAAGTGCATAAACACTTGAATCGATTGAAT 298
||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||
Sbjct 247 GGGAGACTCAGTGTTTCAAGGCAGAATTTTGAAGTGCACAAACACTTGAATCGATTGAAT 306
Query 299 AAACCAGCCGTTAAGAGCATTCAGAGTCCAGATGGTGACATAATAGACTGTGTTCATATA 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 307 AAACCAGCCGTTAAGAGCATTCAGAGTCCAGATGGTGACATAATAGACTGTGTTCACATA 366
Query 359 TCTAAGCAACCAGCTTTTGATCATCCTTTCCTCAAAGATCACATGATTCAGATGAAACCT 418
|| |||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||
Sbjct 367 TCGAAGCAACCAGCTTTTGATCACCCTTTCCTCAAAGATCACAAGATTCAGATGGGACCT 426
Query 419 AGTTACTCTCCAGAATCGTTGTTTGATGAGAGCAAAGTGTCTGAGAAACCAAAAGAGAGA 478
|||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 427 AGTTACACTCCAGAATCGCTGTTTGGTGAGAGCAAAGTGTCTGAGAAACCAAAAGAGAGT 486
Query 479 GTCAATCCAATAACTCAGTTATGGCACCAGAATGGA-TTGTGTTCTGAAGGGACAATACC 537
|||||||| || || ||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 487 GTCAATCCTATTACACAGTTATGGCACCAGAACGGAGTT-TGTTCTGAAGGGACAATACC 545
Query 538 AGTGAGGAGAACAAAGAAAGAGGATGTCTTGAGGGCGAGTTCTGTTAAACGTTATGGGAG 597
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 546 AGTGAGGAGGACAAAGAAAGAGGATGTCTTGAGGGCGAGTTCTGTTAAACGGTATGGTAA 605
Query 598 GAAGAAGCACCGGTCTGTTCCTCTGCCCCGATCTGCTGATCCTGATCTTATCAACCAAAG 657
||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 606 GAAGAAGCACCTTTCTGTTCCTCTGCCTCGATCTGCTGATCCTGATCTCATTAACCAAAG 665
Query 658 TGGTCATCAGCACGCCATAGCTTATGTGGAAGGAGGCAAGTTTTACGGGGCAAAGGCGAC 717
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TGGTCATCAGCACGCTATAGCTTATGTGGAAGGAGGCAAGTTTTACGGGGCAAAGGCGAC 725
Query 718 AATAAATGTATGGGAACCCAAAGTGCAAAACTCTAATGAGTTCAGCTTATCTCAGTTATG 777
||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct 726 AATAAATGTATGGGAACCCAAAGTGCAAAGCTCTAATGAGTTTAGCTTGTCTCAGTTATG 785
Query 778 GATTCTTGGAGGTTCTTTTGGTCAAGATCTCAACAGCATTGAAGCTGGTTGGCAGGTTAG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 GATTCTTGGAGGTTCTTTTGGTCAAGATCTCAACAGCATTGAAGCTGGTTGGCAGGTTAG 845
Query 838 TCCAGATTTATATGGCGATAACAACACAAGGCTTTTCACATACTGGACGAGCGATGCTTA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TCCAGATTTATATGGCGATAACAACACAAGGCTTTTCACATACTGGACGAGCGATGCTTA 905
Query 898 TCAAGCTACTGGCTGCTACAATCTCCTTTGTTCGGGTTTTATACAAATCAACAGTCAAAT 957
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 906 TCAAGCTACGGGCTGCTACAATCTCCTTTGTTCGGGTTTCATACAAATCAACAGTCAAAT 965
Query 958 AGCAATGGGAGCCAGTATTTCTCCTGTATCTGGCTTCCATAACCCACAATATGATATTAG 1017
|||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| ||
Sbjct 966 AGCAATGGGAGCAAGTATCTCTCCGGTATCTGGCTTCCATAACCCGCAATACGATATAAG 1025
Query 1018 TATCACCATTTGGAAGGATCCTAAAGAAGGTCACTGGTGGATGCAGTTTGGGGACGGGTA 1077
||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 1026 TATTACCATTTGGAAGGATCCAAAAGAAGGGCACTGGTGGATGCAGTTTGGAGACGGGTA 1085
Query 1078 TGTGTTGGGATACTGGCCAAGCTTTCTATTCTCATACTTAGCTGATAGTGCATCAATAGT 1137
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1086 TGTGTTGGGATACTGGCCAAGCTTTCTATTCTCTTACTTAGCAGATAGTGCATCAATAGT 1145
Query 1138 AGAATGGGGTGGAGAAGTAGTGAACATGGAAGAAGATGGTCACCACACAACCACACAAAT 1197
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1146 AGAGTGGGGTGGAGAAGTAGTGAACATGGAAGAAGATGGTCACCACACAACCACGCAAAT 1205
Query 1198 GGGAAGCGGTCAATTTCCTGATGAAGGGTTCACGAAAGCGAGTTACTTCAGGAACATTCA 1257
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 GGGAAGCGGTCAATTTCCGGATGAAGGGTTCACGAAAGCGAGTTACTTCAGGAACATTCA 1265
Query 1258 AGTCGTTGATAGCTCTAACAATCTGAAAGAACCAAAAGGTCTCAACACTTTCACTGAGAA 1317
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1266 AGTCGTTGATAGCTCTAATAATCTGAAAGAACCAAAAGGGCTCAACACTTTCACTGAGAA 1325
Query 1318 ATCGAATTGCTATGATGTTGAGGTTGGTAAGAATGAAGATTGGGGACATTATTTTTACTA 1377
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1326 ATCGAATTGCTATGATGTTGAGGTTGGTAAGAATGATGATTGGGGACATTATTTTTACTA 1385
Query 1378 TGGAGGTCCTGGAAGAAACCCTAATTGTCAGTAGAAGATGAACAAAAGAAAGAAGATGAT 1437
||||||||||||||||||||||||||||||||||||| | || | |||||||||||||
Sbjct 1386 TGGAGGTCCTGGAAGAAACCCTAATTGTCAGTAGAAGTT-AA-A---GAAAGAAGATGAT 1440
Query 1438 TGAAGATGTAGAGGAACACTTGTGCTGGATTTTT-CATTATTATGTGAAGTGTGAAAATA 1496
||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1441 TGAAGTTGTAGAGGAACACTTGTGCTGGATTTTTTC-TTATTATGTGAAGTGTGAAAATA 1499
Query 1497 TCGttttagttgatttttccttacactt 1524
||||||| ||||||||||||||||||||
Sbjct 1500 TCGTTTTTGTTGATTTTTCCTTACACTT 1527
> AT2G03930.2 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:1204920-1206249 REVERSE LENGTH=495
Length=495
Score = 60.2 bits (32), Expect = 6e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 804 ATCTCAACAGCATTGAAGCTGGTTGGCAGGTT 835
||||||||||||||||||||||||||||||||
Sbjct 272 ATCTCAACAGCATTGAAGCTGGTTGGCAGGTT 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579896525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5